Wall clock time and date at job start Sun Mar 7 2021 02:09:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.36775 * 125.79936 * 2 1 4 4 C 1.47264 * 126.94216 * 359.97438 * 3 2 1 5 5 O 1.21625 * 119.99720 * 0.02562 * 4 3 2 6 6 N 1.34773 * 119.99854 * 180.02562 * 4 3 2 7 7 C 1.46498 * 119.99862 * 180.02562 * 6 4 3 8 8 H 1.09000 * 109.47133 * 324.99701 * 7 6 4 9 9 C 1.53001 * 109.47571 * 84.99664 * 7 6 4 10 10 C 1.52992 * 109.47553 * 179.97438 * 9 7 6 11 11 C 1.53001 * 109.47294 * 300.00433 * 10 9 7 12 12 H 1.09000 * 109.46814 * 299.99812 * 11 10 9 13 13 C 1.53005 * 109.47091 * 179.97438 * 11 10 9 14 14 C 1.52996 * 109.47125 * 59.99919 * 13 11 10 15 15 C 1.53002 * 109.46571 * 179.97438 * 13 11 10 16 16 C 1.52996 * 109.47203 * 59.99864 * 11 10 9 17 17 C 1.53001 * 109.47178 * 205.00037 * 7 6 4 18 18 C 1.46690 * 106.11279 * 179.97438 * 3 2 1 19 19 C 1.34485 * 106.33274 * 359.97438 * 18 3 2 20 20 C 1.50696 * 125.56785 * 179.97438 * 19 18 3 21 21 O 1.42894 * 109.47519 * 300.00177 * 20 19 18 22 22 Si 1.86298 * 109.47155 * 179.97438 * 20 19 18 23 23 N 1.34655 * 125.80597 * 179.97438 * 2 1 3 24 24 H 1.09006 * 109.46576 * 270.01009 * 1 2 3 25 25 H 1.08993 * 109.47545 * 30.00969 * 1 2 3 26 26 H 1.09005 * 109.46979 * 150.01944 * 1 2 3 27 27 H 0.96998 * 119.99992 * 0.02562 * 6 4 3 28 28 H 1.08997 * 109.47089 * 300.00508 * 9 7 6 29 29 H 1.09000 * 109.46861 * 59.99871 * 9 7 6 30 30 H 1.08999 * 109.47389 * 179.97438 * 10 9 7 31 31 H 1.09000 * 109.47036 * 60.00109 * 10 9 7 32 32 H 1.09000 * 109.46706 * 299.99771 * 13 11 10 33 33 H 1.09000 * 109.47278 * 59.99781 * 14 13 11 34 34 H 1.08995 * 109.47331 * 180.02562 * 14 13 11 35 35 H 1.08997 * 109.47117 * 300.00144 * 14 13 11 36 36 H 1.08997 * 109.47222 * 60.00118 * 15 13 11 37 37 H 1.09005 * 109.46582 * 180.02562 * 15 13 11 38 38 H 1.09000 * 109.47502 * 299.99386 * 15 13 11 39 39 H 1.08998 * 109.47364 * 180.02562 * 16 11 10 40 40 H 1.09000 * 109.47449 * 59.99705 * 16 11 10 41 41 H 1.09000 * 109.46814 * 299.99860 * 17 7 6 42 42 H 1.08997 * 109.47046 * 59.99853 * 17 7 6 43 43 H 1.08004 * 126.82773 * 180.26241 * 18 3 2 44 44 H 1.09005 * 109.47133 * 60.00540 * 20 19 18 45 45 H 0.96697 * 113.99864 * 300.00186 * 21 20 19 46 46 H 1.48503 * 109.99835 * 58.68229 * 22 20 19 47 47 H 1.48498 * 110.00178 * 180.02562 * 22 20 19 48 48 H 0.97009 * 124.84925 * 0.04461 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3071 1.1093 0.0000 4 6 1.8702 2.5157 -0.0005 5 8 0.6838 2.7839 -0.0006 6 7 2.7849 3.5055 -0.0010 7 6 2.3502 4.9045 -0.0009 8 1 1.4383 5.0017 -0.5901 9 6 2.0793 5.3544 1.4361 10 6 1.6260 6.8157 1.4362 11 6 2.7234 7.6901 0.8263 12 1 3.6352 7.5925 1.4155 13 6 2.2698 9.1514 0.8258 14 6 1.9985 9.6016 2.2626 15 6 3.3675 10.0258 0.2164 16 6 2.9942 7.2403 -0.6108 17 6 3.4472 5.7793 -0.6111 18 6 3.6882 0.6152 0.0006 19 6 3.6095 -0.7274 0.0015 20 6 4.7820 -1.6741 0.0019 21 8 5.5756 -1.4501 -1.1651 22 14 4.1616 -3.4308 0.0040 23 7 2.2948 -1.0921 0.0005 24 1 -0.3633 0.0002 1.0278 25 1 -0.3634 0.8898 -0.5139 26 1 -0.3633 -0.8902 -0.5136 27 1 3.7310 3.2915 -0.0013 28 1 1.2979 4.7312 1.8708 29 1 2.9912 5.2572 2.0252 30 1 1.4326 7.1361 2.4599 31 1 0.7142 6.9133 0.8470 32 1 1.3581 9.2485 0.2363 33 1 2.9102 9.5044 2.8521 34 1 1.6749 10.6424 2.2623 35 1 1.2168 8.9786 2.6971 36 1 3.5611 9.7052 -0.8072 37 1 3.0445 11.0669 0.2165 38 1 4.2789 9.9286 0.8063 39 1 3.7763 7.8630 -1.0452 40 1 2.0824 7.3378 -1.2000 41 1 4.3591 5.6822 -0.0219 42 1 3.6401 5.4588 -1.6348 43 1 4.5890 1.2111 0.0048 44 1 5.3877 -1.5021 0.8917 45 1 5.0999 -1.5853 -1.9961 46 1 3.3079 -3.6693 -1.1875 47 1 5.3083 -4.3744 0.0049 48 1 1.9734 -2.0074 0.0003 There are 58 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 58 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14589126_9865296.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 02:09:15 Heat of formation + Delta-G solvation = -51.104779 kcal Electronic energy + Delta-G solvation = -25846.346023 eV Core-core repulsion = 22288.124895 eV Total energy + Delta-G solvation = -3558.221128 eV No. of doubly occupied orbitals = 58 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 307.193 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.49354 -40.85027 -39.47953 -37.91129 -36.59823 -34.13249 -32.81528 -32.12974 -31.89547 -29.48796 -28.81324 -27.99510 -25.70639 -24.23457 -23.43954 -22.77044 -21.57028 -21.23063 -20.68992 -20.29213 -18.75284 -17.78666 -17.44567 -16.82069 -16.60541 -16.30287 -15.83646 -15.54409 -15.20292 -15.19098 -14.95992 -14.72962 -14.52378 -14.41642 -14.29817 -14.13489 -13.97313 -13.83147 -13.36860 -13.35275 -13.05990 -12.77672 -12.71548 -12.63201 -12.62595 -12.25833 -12.15171 -12.07139 -12.01961 -11.60297 -11.30935 -11.18914 -10.94028 -10.85685 -10.60075 -10.09204 -9.79210 -9.16048 -5.06695 0.70099 1.10467 1.29378 1.45808 1.81481 2.04430 2.42625 2.53832 3.32283 3.65095 3.67978 3.71925 3.79870 3.88058 4.04633 4.09496 4.17850 4.22894 4.32805 4.35566 4.40684 4.49743 4.54319 4.55511 4.56788 4.67519 4.69714 4.71844 4.77421 4.82554 4.84190 5.01082 5.02976 5.04343 5.07270 5.11118 5.16032 5.21092 5.22514 5.25772 5.31664 5.38779 5.42055 5.56696 5.61531 5.65025 5.68899 5.85353 6.39588 6.44874 6.67961 7.37003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C 0.118 3.882 3 C -0.266 4.266 4 C 0.586 3.414 5 O -0.587 6.587 6 N -0.715 5.715 7 C 0.150 3.850 8 H 0.062 0.938 9 C -0.121 4.121 10 C -0.110 4.110 11 C -0.077 4.077 12 H 0.074 0.926 13 C -0.092 4.092 14 C -0.151 4.151 15 C -0.149 4.149 16 C -0.111 4.111 17 C -0.118 4.118 18 C -0.138 4.138 19 C -0.021 4.021 20 C -0.047 4.047 21 O -0.540 6.540 22 Si 0.756 3.244 23 N -0.534 5.534 24 H 0.086 0.914 25 H 0.079 0.921 26 H 0.089 0.911 27 H 0.409 0.591 28 H 0.043 0.957 29 H 0.070 0.930 30 H 0.070 0.930 31 H 0.054 0.946 32 H 0.064 0.936 33 H 0.055 0.945 34 H 0.052 0.948 35 H 0.056 0.944 36 H 0.061 0.939 37 H 0.051 0.949 38 H 0.055 0.945 39 H 0.080 0.920 40 H 0.058 0.942 41 H 0.080 0.920 42 H 0.071 0.929 43 H 0.156 0.844 44 H 0.139 0.861 45 H 0.387 0.613 46 H -0.276 1.276 47 H -0.293 1.293 48 H 0.426 0.574 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.866 -2.205 1.411 3.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.002 4.002 3 C -0.275 4.275 4 C 0.376 3.624 5 O -0.469 6.469 6 N -0.365 5.365 7 C 0.045 3.955 8 H 0.081 0.919 9 C -0.160 4.160 10 C -0.148 4.148 11 C -0.095 4.095 12 H 0.093 0.907 13 C -0.110 4.110 14 C -0.208 4.208 15 C -0.206 4.206 16 C -0.149 4.149 17 C -0.156 4.156 18 C -0.162 4.162 19 C -0.129 4.129 20 C -0.157 4.157 21 O -0.347 6.347 22 Si 0.659 3.341 23 N -0.134 5.134 24 H 0.105 0.895 25 H 0.098 0.902 26 H 0.108 0.892 27 H 0.245 0.755 28 H 0.062 0.938 29 H 0.089 0.911 30 H 0.088 0.912 31 H 0.073 0.927 32 H 0.082 0.918 33 H 0.074 0.926 34 H 0.071 0.929 35 H 0.075 0.925 36 H 0.080 0.920 37 H 0.070 0.930 38 H 0.074 0.926 39 H 0.099 0.901 40 H 0.077 0.923 41 H 0.099 0.901 42 H 0.089 0.911 43 H 0.174 0.826 44 H 0.157 0.843 45 H 0.237 0.763 46 H -0.202 1.202 47 H -0.220 1.220 48 H 0.268 0.732 Dipole moment (debyes) X Y Z Total from point charges 1.490 -2.784 1.422 3.463 hybrid contribution 0.408 -0.003 -1.111 1.184 sum 1.898 -2.787 0.310 3.386 Atomic orbital electron populations 1.20607 0.86109 1.04443 1.04177 1.20554 0.94278 0.85608 0.99748 1.20220 0.94223 0.91734 1.21350 1.17643 0.85061 0.85014 0.74657 1.90720 1.18095 1.85011 1.53061 1.45798 1.10027 1.05528 1.75128 1.20934 0.98219 0.79753 0.96560 0.91930 1.21828 1.01243 0.96537 0.96359 1.21573 0.98358 0.93427 1.01414 1.21188 0.98388 0.93647 0.96307 0.90729 1.21125 0.98784 0.94341 0.96763 1.21904 1.01694 1.00982 0.96202 1.21897 0.98439 0.99240 1.01053 1.21583 1.01843 0.94796 0.96642 1.21748 0.97699 0.94819 1.01367 1.21951 0.95336 0.93237 1.05675 1.20619 0.84711 0.95502 1.12085 1.24627 0.92036 1.07192 0.91823 1.86624 1.40415 1.91162 1.16512 0.94607 0.80988 0.71884 0.86597 1.41677 1.05200 1.08748 1.57804 0.89521 0.90209 0.89209 0.75459 0.93808 0.91111 0.91158 0.92724 0.91784 0.92578 0.92871 0.92533 0.92013 0.92970 0.92553 0.90117 0.92331 0.90135 0.91080 0.82625 0.84304 0.76349 1.20190 1.22029 0.73223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.07 9.88 71.24 0.70 0.64 16 2 C 0.12 0.29 7.17 41.78 0.30 0.59 16 3 C -0.27 -1.43 6.29 -19.04 -0.12 -1.55 16 4 C 0.59 5.27 7.77 86.62 0.67 5.94 16 5 O -0.59 -9.14 14.47 -4.11 -0.06 -9.20 16 6 N -0.71 -2.42 5.07 -445.96 -2.26 -4.68 16 7 C 0.15 0.47 2.45 44.99 0.11 0.58 16 8 H 0.06 0.53 7.58 -2.39 -0.02 0.51 16 9 C -0.12 -0.38 5.49 30.59 0.17 -0.21 16 10 C -0.11 -0.14 4.85 30.59 0.15 0.01 16 11 C -0.08 0.09 1.78 -10.79 -0.02 0.07 16 12 H 0.07 -0.11 8.14 -2.39 -0.02 -0.12 16 13 C -0.09 0.08 2.51 -10.79 -0.03 0.05 16 14 C -0.15 0.09 8.84 71.98 0.64 0.73 16 15 C -0.15 0.25 8.84 71.98 0.64 0.89 16 16 C -0.11 0.19 4.85 30.58 0.15 0.34 16 17 C -0.12 0.20 5.39 30.58 0.16 0.36 16 18 C -0.14 -0.17 10.43 23.62 0.25 0.07 16 19 C -0.02 0.03 6.11 40.98 0.25 0.28 16 20 C -0.05 0.19 2.98 71.23 0.21 0.40 16 21 O -0.54 0.39 12.87 -148.98 -1.92 -1.53 16 22 Si 0.76 -4.48 30.94 68.60 2.12 -2.36 16 23 N -0.53 1.47 5.41 -171.08 -0.93 0.55 16 24 H 0.09 -0.03 8.14 -2.38 -0.02 -0.05 16 25 H 0.08 0.50 6.47 -2.39 -0.02 0.48 16 26 H 0.09 -0.41 8.14 -2.38 -0.02 -0.43 16 27 H 0.41 -0.54 7.73 -92.71 -0.72 -1.26 16 28 H 0.04 0.36 8.14 -2.39 -0.02 0.34 16 29 H 0.07 0.10 8.14 -2.39 -0.02 0.08 16 30 H 0.07 0.06 6.43 -2.39 -0.02 0.05 16 31 H 0.05 0.18 8.14 -2.39 -0.02 0.16 16 32 H 0.06 0.03 8.14 -2.39 -0.02 0.01 16 33 H 0.06 -0.05 8.14 -2.39 -0.02 -0.07 16 34 H 0.05 -0.02 8.14 -2.39 -0.02 -0.04 16 35 H 0.06 -0.01 6.43 -2.39 -0.02 -0.03 16 36 H 0.06 -0.15 6.43 -2.39 -0.02 -0.16 16 37 H 0.05 -0.06 8.14 -2.38 -0.02 -0.08 16 38 H 0.06 -0.10 8.14 -2.39 -0.02 -0.12 16 39 H 0.08 -0.26 6.43 -2.39 -0.02 -0.28 16 40 H 0.06 0.00 8.14 -2.39 -0.02 -0.02 16 41 H 0.08 -0.30 8.14 -2.39 -0.02 -0.32 16 42 H 0.07 -0.12 8.14 -2.39 -0.02 -0.14 16 43 H 0.16 -0.26 7.70 -2.91 -0.02 -0.28 16 44 H 0.14 -0.84 7.96 -2.38 -0.02 -0.86 16 45 H 0.39 -2.21 8.70 -74.06 -0.64 -2.85 16 46 H -0.28 0.69 7.11 99.48 0.71 1.39 16 47 H -0.29 -0.66 7.11 99.48 0.71 0.05 16 48 H 0.43 -3.56 6.70 -92.70 -0.62 -4.18 16 Total: 0.00 -16.47 371.15 0.21 -16.26 By element: Atomic # 1 Polarization: -7.25 SS G_CDS: -0.98 Total: -8.22 kcal Atomic # 6 Polarization: 4.96 SS G_CDS: 4.23 Total: 9.19 kcal Atomic # 7 Polarization: -0.95 SS G_CDS: -3.19 Total: -4.14 kcal Atomic # 8 Polarization: -8.75 SS G_CDS: -1.98 Total: -10.73 kcal Atomic # 14 Polarization: -4.48 SS G_CDS: 2.12 Total: -2.36 kcal Total: -16.47 0.21 -16.26 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14589126_9865296.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.847 kcal (2) G-P(sol) polarization free energy of solvation -16.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.257 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds