Wall clock time and date at job start Sun Mar 7 2021 02:27:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.45203 * 109.47181 * 2 1 4 4 C 1.34222 * 117.00290 * 179.97438 * 3 2 1 5 5 O 1.20834 * 120.00253 * 0.02562 * 4 3 2 6 6 C 1.50703 * 120.00477 * 179.97438 * 4 3 2 7 7 H 1.09005 * 109.46707 * 59.99846 * 6 4 3 8 8 C 1.52998 * 109.47510 * 179.97438 * 6 4 3 9 9 C 1.52996 * 109.46977 * 179.97438 * 8 6 4 10 10 C 1.52998 * 109.47269 * 300.00069 * 9 8 6 11 11 H 1.09005 * 109.47138 * 299.99886 * 10 9 8 12 12 N 1.46505 * 109.46989 * 180.02562 * 10 9 8 13 13 C 1.34775 * 119.99833 * 155.00573 * 12 10 9 14 14 O 1.21276 * 120.00129 * 359.97438 * 13 12 10 15 15 C 1.50703 * 119.99879 * 180.02562 * 13 12 10 16 16 C 1.53005 * 109.46782 * 294.99377 * 15 13 12 17 17 O 1.42900 * 109.47183 * 174.99525 * 15 13 12 18 18 C 1.35894 * 116.99764 * 204.94583 * 17 15 13 19 19 C 1.38738 * 120.05413 * 174.27705 * 18 17 15 20 20 C 1.38142 * 119.94297 * 179.74370 * 19 18 17 21 21 C 1.38261 * 120.05637 * 0.50989 * 20 19 18 22 22 C 1.50698 * 119.94445 * 179.74639 * 21 20 19 23 23 O 1.42901 * 109.47599 * 120.01719 * 22 21 20 24 24 Si 1.86301 * 109.47157 * 0.02562 * 22 21 20 25 25 C 1.38266 * 120.11118 * 359.76158 * 21 20 19 26 26 C 1.38145 * 120.05615 * 359.97438 * 25 21 20 27 27 C 1.52998 * 109.47177 * 60.00053 * 10 9 8 28 28 C 1.52996 * 109.46977 * 300.00125 * 27 10 9 29 29 H 1.08999 * 109.47160 * 60.00025 * 1 2 3 30 30 H 1.09005 * 109.46760 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47480 * 300.00076 * 1 2 3 32 32 H 1.08998 * 109.47480 * 239.99923 * 2 1 3 33 33 H 1.08999 * 109.47160 * 119.99974 * 2 1 3 34 34 H 1.08999 * 109.47146 * 300.00181 * 8 6 4 35 35 H 1.09010 * 109.46565 * 59.99969 * 8 6 4 36 36 H 1.08997 * 109.47150 * 60.00705 * 9 8 6 37 37 H 1.09000 * 109.46991 * 180.02562 * 9 8 6 38 38 H 0.97001 * 119.99802 * 334.99318 * 12 10 9 39 39 H 1.08994 * 109.47589 * 54.98995 * 15 13 12 40 40 H 1.09005 * 109.47198 * 300.00235 * 16 15 13 41 41 H 1.09002 * 109.47245 * 60.00007 * 16 15 13 42 42 H 1.09000 * 109.47407 * 180.02562 * 16 15 13 43 43 H 1.08001 * 120.02630 * 359.97438 * 19 18 17 44 44 H 1.07999 * 119.97025 * 180.27184 * 20 19 18 45 45 H 1.09002 * 109.47072 * 240.01971 * 22 21 20 46 46 H 0.96692 * 114.00270 * 300.00159 * 23 22 21 47 47 H 1.48502 * 109.99849 * 58.68362 * 24 22 21 48 48 H 1.48507 * 109.99826 * 179.97438 * 24 22 21 49 49 H 1.08000 * 119.96972 * 179.97438 * 25 21 20 50 50 H 1.08001 * 120.02680 * 179.97438 * 26 25 21 51 51 H 1.09005 * 109.47223 * 59.99885 * 27 10 9 52 52 H 1.08999 * 109.47146 * 179.97438 * 27 10 9 53 53 H 1.08997 * 109.47150 * 299.99295 * 28 27 10 54 54 H 1.09000 * 109.46991 * 179.97438 * 28 27 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3446 1.5449 0.0005 5 8 4.0808 0.5867 0.0005 6 6 3.9207 2.9375 0.0000 7 1 3.5843 3.4701 0.8895 8 6 5.4486 2.8574 0.0014 9 6 6.0333 4.2713 0.0002 10 6 5.5628 5.0167 -1.2503 11 1 5.8996 4.4835 -2.1394 12 7 6.1232 6.3703 -1.2517 13 6 6.2877 7.0304 -2.4152 14 8 5.9721 6.5036 -3.4610 15 6 6.8647 8.4225 -2.4167 16 6 5.9055 9.3729 -1.6970 17 8 7.0476 8.8609 -3.7644 18 6 7.9946 9.8113 -3.9809 19 6 8.3083 10.1972 -5.2760 20 6 9.2675 11.1674 -5.4932 21 6 9.9222 11.7460 -4.4216 22 6 10.9722 12.7999 -4.6617 23 8 10.5825 14.0157 -4.0197 24 14 11.1495 13.0941 -6.4928 25 6 9.6153 11.3590 -3.1302 26 6 8.6530 10.3932 -2.9074 27 6 4.0349 5.0967 -1.2517 28 6 3.4502 3.6829 -1.2505 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 1.8933 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 5.7837 2.3260 0.8921 35 1 5.7853 2.3246 -0.8880 36 1 5.6967 4.8044 0.8893 37 1 7.1218 4.2142 0.0008 38 1 6.3758 6.7915 -0.4152 39 1 7.8257 8.4182 -1.9024 40 1 4.9444 9.3773 -2.2113 41 1 5.7659 9.0385 -0.6690 42 1 6.3226 10.3799 -1.6985 43 1 7.8004 9.7423 -6.1136 44 1 9.5089 11.4713 -6.5010 45 1 11.9252 12.4629 -4.2538 46 1 9.7413 14.3743 -4.3339 47 1 9.8489 13.5236 -7.0665 48 1 12.1818 14.1321 -6.7428 49 1 10.1284 11.8122 -2.2949 50 1 8.4140 10.0910 -1.8985 51 1 3.6982 5.6299 -0.3626 52 1 3.6998 5.6282 -2.1424 53 1 3.7868 3.1498 -2.1396 54 1 2.3617 3.7399 -1.2511 There are 71 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 71 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14589458_10157680.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 02:27:05 Heat of formation + Delta-G solvation = -171.599885 kcal Electronic energy + Delta-G solvation = -34292.580549 eV Core-core repulsion = 29582.061415 eV Total energy + Delta-G solvation = -4710.519134 eV No. of doubly occupied orbitals = 71 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 378.197 amu Computer time = 1.40 seconds Orbital eigenvalues (eV) -41.96301 -41.70741 -40.79050 -39.45597 -38.77123 -37.68810 -37.25722 -35.49545 -33.46923 -32.69664 -32.06503 -31.84391 -31.54410 -30.53692 -26.73689 -26.00583 -25.01095 -24.14115 -23.84602 -23.55175 -22.46957 -21.89681 -21.44903 -20.78127 -19.49486 -18.80644 -18.56977 -18.31632 -17.68253 -17.61184 -17.30376 -16.83485 -16.73664 -16.33428 -16.16258 -15.89213 -15.72930 -15.42795 -15.28287 -15.01525 -14.92767 -14.75204 -14.54238 -14.30469 -14.27054 -14.14542 -13.84035 -13.62827 -13.44659 -13.37238 -13.32631 -13.25567 -12.95609 -12.87132 -12.77436 -12.53178 -12.40522 -12.26319 -12.19489 -12.19432 -11.98928 -11.63309 -11.60087 -11.54617 -11.46954 -11.34023 -10.86732 -10.59328 -10.16069 -10.03378 -9.21661 -4.91301 0.25185 0.33239 1.08576 1.33422 1.43337 1.49114 1.60346 1.64193 1.95872 2.49813 2.65406 3.40100 3.44792 3.47913 3.57957 3.63735 3.69619 3.72956 3.83655 3.87131 3.90842 3.93719 3.96052 4.02305 4.07578 4.16364 4.27843 4.28603 4.30672 4.31692 4.37025 4.42571 4.56905 4.58841 4.61427 4.64976 4.71568 4.75357 4.82038 4.87627 4.92550 5.00133 5.04183 5.07587 5.09224 5.10460 5.14346 5.19605 5.24516 5.26812 5.29750 5.41391 5.46252 5.48586 5.68871 6.27672 6.48100 6.50486 6.64706 7.13056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.053 3.947 3 O -0.360 6.360 4 C 0.462 3.538 5 O -0.542 6.542 6 C -0.074 4.074 7 H 0.140 0.860 8 C -0.100 4.100 9 C -0.112 4.112 10 C 0.143 3.857 11 H 0.062 0.938 12 N -0.702 5.702 13 C 0.517 3.483 14 O -0.568 6.568 15 C 0.064 3.936 16 C -0.171 4.171 17 O -0.313 6.313 18 C 0.120 3.880 19 C -0.161 4.161 20 C -0.077 4.077 21 C -0.159 4.159 22 C -0.071 4.071 23 O -0.548 6.548 24 Si 0.754 3.246 25 C -0.056 4.056 26 C -0.207 4.207 27 C -0.120 4.120 28 C -0.103 4.103 29 H 0.067 0.933 30 H 0.095 0.905 31 H 0.071 0.929 32 H 0.064 0.936 33 H 0.069 0.931 34 H 0.080 0.920 35 H 0.055 0.945 36 H 0.103 0.897 37 H 0.085 0.915 38 H 0.421 0.579 39 H 0.126 0.874 40 H 0.058 0.942 41 H 0.112 0.888 42 H 0.083 0.917 43 H 0.134 0.866 44 H 0.147 0.853 45 H 0.127 0.873 46 H 0.385 0.615 47 H -0.286 1.286 48 H -0.303 1.303 49 H 0.140 0.860 50 H 0.155 0.845 51 H 0.096 0.904 52 H 0.054 0.946 53 H 0.054 0.946 54 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.099 1.305 6.577 6.795 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.020 4.020 3 O -0.277 6.277 4 C 0.307 3.693 5 O -0.432 6.432 6 C -0.092 4.092 7 H 0.158 0.842 8 C -0.138 4.138 9 C -0.150 4.150 10 C 0.038 3.962 11 H 0.080 0.920 12 N -0.356 5.356 13 C 0.302 3.698 14 O -0.446 6.446 15 C 0.004 3.996 16 C -0.229 4.229 17 O -0.226 6.226 18 C 0.075 3.925 19 C -0.179 4.179 20 C -0.094 4.094 21 C -0.159 4.159 22 C -0.181 4.181 23 O -0.356 6.356 24 Si 0.661 3.339 25 C -0.074 4.074 26 C -0.225 4.225 27 C -0.159 4.159 28 C -0.142 4.142 29 H 0.086 0.914 30 H 0.114 0.886 31 H 0.090 0.910 32 H 0.082 0.918 33 H 0.087 0.913 34 H 0.099 0.901 35 H 0.074 0.926 36 H 0.122 0.878 37 H 0.103 0.897 38 H 0.259 0.741 39 H 0.144 0.856 40 H 0.078 0.922 41 H 0.130 0.870 42 H 0.102 0.898 43 H 0.151 0.849 44 H 0.164 0.836 45 H 0.145 0.855 46 H 0.235 0.765 47 H -0.212 1.212 48 H -0.231 1.231 49 H 0.158 0.842 50 H 0.173 0.827 51 H 0.114 0.886 52 H 0.072 0.928 53 H 0.072 0.928 54 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -0.779 0.982 5.362 5.506 hybrid contribution -0.712 0.403 0.514 0.966 sum -1.491 1.385 5.876 6.218 Atomic orbital electron populations 1.21821 0.90676 1.04233 1.03764 1.23233 0.96934 0.79475 1.02355 1.86514 1.24367 1.33331 1.83464 1.24392 0.80524 0.93439 0.70963 1.90674 1.61133 1.44550 1.46794 1.21268 0.96617 0.88153 1.03188 0.84244 1.21372 0.91499 0.97451 1.03497 1.21742 1.01862 0.94181 0.97226 1.21046 0.93391 0.81982 0.99746 0.92004 1.45746 1.64459 1.16702 1.08682 1.20512 0.77983 0.87177 0.84086 1.90756 1.51109 1.69372 1.33392 1.22434 1.02348 0.91906 0.82881 1.22361 0.98983 0.99686 1.01852 1.86190 1.53564 1.53758 1.29117 1.19269 0.89001 0.89369 0.94854 1.20582 1.01244 1.01040 0.95076 1.20963 0.94357 0.94982 0.99122 1.20264 1.00735 1.00893 0.94023 1.25042 0.98969 0.83566 1.10521 1.86558 1.44605 1.39454 1.64969 0.94174 0.78076 0.87272 0.74418 1.20994 0.95183 0.94341 0.96892 1.21528 1.00776 1.01202 0.99039 1.21846 0.94383 0.96186 1.03439 1.21427 1.01986 0.95330 0.95417 0.91375 0.88647 0.91040 0.91783 0.91305 0.90098 0.92567 0.87825 0.89650 0.74066 0.85630 0.92247 0.86987 0.89850 0.84853 0.83596 0.85539 0.76536 1.21242 1.23138 0.84188 0.82709 0.88570 0.92760 0.92759 0.89509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.50 10.29 71.98 0.74 1.24 16 2 C 0.05 0.07 6.19 71.98 0.45 0.52 16 3 O -0.36 -1.23 10.12 -51.34 -0.52 -1.75 16 4 C 0.46 1.94 7.25 71.24 0.52 2.46 16 5 O -0.54 -5.90 15.73 21.94 0.35 -5.56 16 6 C -0.07 0.23 2.63 -11.54 -0.03 0.20 16 7 H 0.14 -1.18 8.14 -2.38 -0.02 -1.20 16 8 C -0.10 0.32 4.49 30.59 0.14 0.46 16 9 C -0.11 0.93 5.39 30.59 0.16 1.10 16 10 C 0.14 -0.50 2.45 44.99 0.11 -0.39 16 11 H 0.06 0.21 7.58 -2.38 -0.02 0.19 16 12 N -0.70 4.04 5.04 -442.53 -2.23 1.81 16 13 C 0.52 1.21 7.14 87.66 0.63 1.84 16 14 O -0.57 -7.88 16.17 15.97 0.26 -7.62 16 15 C 0.06 -0.13 2.64 29.85 0.08 -0.05 16 16 C -0.17 1.18 9.12 71.98 0.66 1.83 16 17 O -0.31 -1.90 9.34 -73.36 -0.69 -2.58 16 18 C 0.12 0.41 6.60 22.51 0.15 0.56 16 19 C -0.16 -0.54 9.99 22.37 0.22 -0.31 16 20 C -0.08 -0.02 8.66 22.25 0.19 0.18 16 21 C -0.16 0.05 5.39 -19.85 -0.11 -0.05 16 22 C -0.07 0.09 2.82 71.24 0.20 0.29 16 23 O -0.55 -0.87 12.77 -148.98 -1.90 -2.77 16 24 Si 0.75 -1.10 29.78 68.60 2.04 0.95 16 25 C -0.06 0.06 9.60 22.25 0.21 0.27 16 26 C -0.21 0.28 8.24 22.36 0.18 0.46 16 27 C -0.12 0.45 5.50 30.59 0.17 0.62 16 28 C -0.10 0.25 5.13 30.59 0.16 0.41 16 29 H 0.07 -0.21 8.14 -2.39 -0.02 -0.23 16 30 H 0.09 -0.58 8.14 -2.38 -0.02 -0.60 16 31 H 0.07 -0.27 8.14 -2.39 -0.02 -0.29 16 32 H 0.06 0.16 8.13 -2.39 -0.02 0.14 16 33 H 0.07 0.10 8.13 -2.39 -0.02 0.09 16 34 H 0.08 -0.22 8.10 -2.39 -0.02 -0.24 16 35 H 0.06 0.07 8.10 -2.38 -0.02 0.06 16 36 H 0.10 -1.39 8.14 -2.39 -0.02 -1.41 16 37 H 0.08 -0.74 8.14 -2.39 -0.02 -0.76 16 38 H 0.42 -5.78 8.38 -92.71 -0.78 -6.56 16 39 H 0.13 -0.98 6.31 -2.39 -0.02 -1.00 16 40 H 0.06 -0.15 8.14 -2.38 -0.02 -0.17 16 41 H 0.11 -1.52 7.92 -2.39 -0.02 -1.54 16 42 H 0.08 -0.61 6.91 -2.39 -0.02 -0.63 16 43 H 0.13 0.40 8.06 -2.91 -0.02 0.38 16 44 H 0.15 -0.51 4.87 -2.91 -0.01 -0.52 16 45 H 0.13 -0.39 7.96 -2.39 -0.02 -0.41 16 46 H 0.39 -1.37 8.70 -74.06 -0.64 -2.01 16 47 H -0.29 -0.80 7.11 99.48 0.71 -0.09 16 48 H -0.30 -1.90 7.11 99.48 0.71 -1.20 16 49 H 0.14 -0.46 8.06 -2.91 -0.02 -0.49 16 50 H 0.16 -1.11 5.43 -2.91 -0.02 -1.12 16 51 H 0.10 -0.82 8.14 -2.38 -0.02 -0.84 16 52 H 0.05 0.09 8.14 -2.39 -0.02 0.07 16 53 H 0.05 0.08 8.14 -2.39 -0.02 0.06 16 54 H 0.09 -0.26 8.11 -2.39 -0.02 -0.28 16 Total: 0.00 -28.18 434.89 1.68 -26.50 By element: Atomic # 1 Polarization: -20.14 SS G_CDS: -0.46 Total: -20.60 kcal Atomic # 6 Polarization: 6.79 SS G_CDS: 4.83 Total: 11.62 kcal Atomic # 7 Polarization: 4.04 SS G_CDS: -2.23 Total: 1.81 kcal Atomic # 8 Polarization: -17.78 SS G_CDS: -2.50 Total: -20.28 kcal Atomic # 14 Polarization: -1.10 SS G_CDS: 2.04 Total: 0.95 kcal Total: -28.18 1.68 -26.50 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14589458_10157680.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -145.096 kcal (2) G-P(sol) polarization free energy of solvation -28.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -173.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.675 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -26.504 kcal (6) G-S(sol) free energy of system = (1) + (5) -171.600 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.40 seconds