Wall clock time and date at job start Sun Mar 7 2021 02:27:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.45194 * 109.47339 * 2 1 4 4 C 1.34235 * 117.00385 * 179.97438 * 3 2 1 5 5 O 1.20824 * 119.99671 * 0.02562 * 4 3 2 6 6 C 1.50693 * 120.00281 * 180.02562 * 4 3 2 7 7 H 1.09000 * 109.47089 * 60.00096 * 6 4 3 8 8 C 1.53003 * 109.47172 * 180.02562 * 6 4 3 9 9 C 1.53003 * 109.47203 * 180.02562 * 8 6 4 10 10 C 1.53000 * 109.46720 * 299.99834 * 9 8 6 11 11 H 1.09000 * 109.47115 * 300.00085 * 10 9 8 12 12 N 1.46503 * 109.47291 * 180.02562 * 10 9 8 13 13 C 1.34769 * 119.99878 * 154.99668 * 12 10 9 14 14 O 1.21696 * 120.00570 * 0.02562 * 13 12 10 15 15 C 1.46680 * 119.99716 * 180.02562 * 13 12 10 16 16 C 1.37876 * 126.23668 * 179.71853 * 15 13 12 17 17 C 1.39829 * 107.08527 * 179.84772 * 16 15 13 18 18 C 1.50708 * 126.06473 * 180.14054 * 17 16 15 19 19 O 1.42892 * 109.47238 * 65.29948 * 18 17 16 20 20 Si 1.86304 * 109.47117 * 185.30296 * 18 17 16 21 21 C 1.35449 * 107.87127 * 0.41418 * 17 16 15 22 22 N 1.35532 * 108.86669 * 359.74196 * 21 17 16 23 23 C 1.52998 * 109.47209 * 59.99795 * 10 9 8 24 24 C 1.52999 * 109.47707 * 299.99984 * 23 10 9 25 25 H 1.09002 * 109.47153 * 59.99705 * 1 2 3 26 26 H 1.09001 * 109.46832 * 299.99896 * 1 2 3 27 27 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47153 * 120.00295 * 2 1 3 29 29 H 1.08998 * 109.47533 * 239.99925 * 2 1 3 30 30 H 1.09003 * 109.46860 * 300.00215 * 8 6 4 31 31 H 1.09000 * 109.47151 * 59.99992 * 8 6 4 32 32 H 1.09000 * 109.47397 * 59.99747 * 9 8 6 33 33 H 1.08994 * 109.47204 * 180.02562 * 9 8 6 34 34 H 0.96998 * 119.99446 * 335.00482 * 12 10 9 35 35 H 1.08000 * 126.45075 * 359.96070 * 16 15 13 36 36 H 1.08998 * 109.46785 * 305.29891 * 18 17 16 37 37 H 0.96698 * 113.99892 * 180.02562 * 19 18 17 38 38 H 1.48494 * 109.99823 * 178.67720 * 20 18 17 39 39 H 1.48503 * 109.99947 * 299.99971 * 20 18 17 40 40 H 1.07999 * 125.56792 * 179.77783 * 21 17 16 41 41 H 0.97004 * 125.67886 * 179.97438 * 22 21 17 42 42 H 1.08997 * 109.47102 * 60.00571 * 23 10 9 43 43 H 1.09003 * 109.46921 * 179.97438 * 23 10 9 44 44 H 1.09000 * 109.47083 * 299.99995 * 24 23 10 45 45 H 1.08998 * 109.47227 * 179.97438 * 24 23 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3448 1.5448 0.0005 5 8 4.0808 0.5866 0.0005 6 6 3.9208 2.9373 0.0012 7 1 3.5845 3.4692 0.8912 8 6 5.4487 2.8572 0.0010 9 6 6.0336 4.2711 0.0023 10 6 5.5620 5.0191 -1.2463 11 1 5.8979 4.4877 -2.1367 12 7 6.1224 6.3727 -1.2455 13 6 6.2859 7.0349 -2.4078 14 8 5.9677 6.5088 -3.4580 15 6 6.8476 8.3899 -2.4070 16 6 7.0747 9.1787 -3.5148 17 6 7.6122 10.3855 -3.0567 18 6 8.0165 11.5583 -3.9125 19 8 6.8585 12.1106 -4.5416 20 14 8.8228 12.8562 -2.8465 21 6 7.7108 10.3111 -1.7079 22 7 7.2494 9.1036 -1.3006 23 6 4.0341 5.0991 -1.2462 24 6 3.4492 3.6853 -1.2474 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 1.8933 -0.5139 0.8900 29 1 1.8934 -0.5138 -0.8899 30 1 5.7847 2.3246 0.8908 31 1 5.7846 2.3255 -0.8892 32 1 5.6977 4.8025 0.8928 33 1 7.1220 4.2140 0.0018 34 1 6.3758 6.7921 -0.4084 35 1 6.8734 8.9148 -4.5426 36 1 8.7206 11.2258 -4.6752 37 1 7.0443 12.8708 -5.1096 38 1 9.2548 14.0042 -3.6835 39 1 7.8730 13.3177 -1.8024 40 1 8.0938 11.0875 -1.0622 41 1 7.2094 8.7936 -0.3823 42 1 3.6981 5.6305 -0.3559 43 1 3.6982 5.6324 -2.1356 44 1 3.7851 3.1539 -2.1379 45 1 2.3607 3.7424 -1.2469 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14589458_10543058.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 02:27:10 Heat of formation + Delta-G solvation = -121.405520 kcal Electronic energy + Delta-G solvation = -26957.310148 eV Core-core repulsion = 22941.525265 eV Total energy + Delta-G solvation = -4015.784883 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 323.161 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.46917 -41.85364 -40.63800 -38.98639 -37.76172 -37.69090 -35.48314 -32.93430 -32.63362 -31.86462 -31.40062 -30.23259 -26.65410 -25.60505 -24.20408 -23.86729 -23.27855 -21.92638 -21.37189 -20.99260 -20.43441 -19.65046 -18.75237 -18.44663 -17.72283 -17.68116 -17.27278 -17.06148 -16.39174 -15.87945 -15.66441 -15.33591 -15.06469 -15.01137 -14.88871 -14.70126 -14.55962 -14.43154 -14.09697 -13.97763 -13.81511 -13.50218 -13.33567 -13.28638 -12.96425 -12.81394 -12.55223 -12.53630 -12.42176 -12.22173 -11.94155 -11.64947 -11.55819 -11.49847 -11.43654 -11.17444 -10.38100 -10.25078 -9.92035 -9.27524 -4.83980 0.37371 1.07683 1.37798 1.54884 1.61062 1.70127 1.93639 2.06039 2.15105 2.27184 3.43774 3.51840 3.56833 3.61212 3.83316 3.89665 3.95274 4.01600 4.05315 4.09771 4.14659 4.16733 4.26772 4.27427 4.29937 4.30724 4.40222 4.57234 4.67100 4.73549 4.80828 4.86472 4.87243 4.93813 5.01790 5.02812 5.06347 5.07661 5.13138 5.22117 5.24416 5.39053 5.44305 5.59848 5.74415 6.37490 6.55293 6.63879 6.69761 7.08461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.053 3.947 3 O -0.361 6.361 4 C 0.463 3.537 5 O -0.541 6.541 6 C -0.074 4.074 7 H 0.139 0.861 8 C -0.099 4.099 9 C -0.112 4.112 10 C 0.143 3.857 11 H 0.065 0.935 12 N -0.708 5.708 13 C 0.590 3.410 14 O -0.575 6.575 15 C -0.068 4.068 16 C -0.107 4.107 17 C -0.191 4.191 18 C -0.065 4.065 19 O -0.565 6.565 20 Si 0.787 3.213 21 C 0.058 3.942 22 N -0.513 5.513 23 C -0.121 4.121 24 C -0.103 4.103 25 H 0.067 0.933 26 H 0.070 0.930 27 H 0.095 0.905 28 H 0.069 0.931 29 H 0.064 0.936 30 H 0.081 0.919 31 H 0.057 0.943 32 H 0.101 0.899 33 H 0.086 0.914 34 H 0.413 0.587 35 H 0.124 0.876 36 H 0.077 0.923 37 H 0.390 0.610 38 H -0.297 1.297 39 H -0.284 1.284 40 H 0.212 0.788 41 H 0.439 0.561 42 H 0.092 0.908 43 H 0.053 0.947 44 H 0.056 0.944 45 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.293 3.301 8.074 9.019 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.020 4.020 3 O -0.277 6.277 4 C 0.308 3.692 5 O -0.430 6.430 6 C -0.093 4.093 7 H 0.156 0.844 8 C -0.137 4.137 9 C -0.150 4.150 10 C 0.038 3.962 11 H 0.084 0.916 12 N -0.360 5.360 13 C 0.379 3.621 14 O -0.454 6.454 15 C -0.181 4.181 16 C -0.134 4.134 17 C -0.197 4.197 18 C -0.172 4.172 19 O -0.375 6.375 20 Si 0.690 3.310 21 C -0.080 4.080 22 N -0.111 5.111 23 C -0.159 4.159 24 C -0.141 4.141 25 H 0.086 0.914 26 H 0.089 0.911 27 H 0.114 0.886 28 H 0.087 0.913 29 H 0.083 0.917 30 H 0.100 0.900 31 H 0.076 0.924 32 H 0.120 0.880 33 H 0.104 0.896 34 H 0.250 0.750 35 H 0.142 0.858 36 H 0.095 0.905 37 H 0.240 0.760 38 H -0.224 1.224 39 H -0.211 1.211 40 H 0.228 0.772 41 H 0.281 0.719 42 H 0.111 0.889 43 H 0.071 0.929 44 H 0.075 0.925 45 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 1.899 2.795 8.109 8.784 hybrid contribution -0.715 0.008 -0.983 1.215 sum 1.184 2.803 7.126 7.748 Atomic orbital electron populations 1.21823 0.90698 1.04246 1.03740 1.23236 0.96922 0.79457 1.02391 1.86516 1.24374 1.33364 1.83473 1.24351 0.80525 0.93380 0.70988 1.90670 1.61120 1.44493 1.46754 1.21261 0.96675 0.88198 1.03129 0.84354 1.21367 0.91422 0.97327 1.03624 1.21745 1.01894 0.94262 0.97088 1.21067 0.93290 0.81800 1.00009 0.91626 1.45725 1.64732 1.17087 1.08409 1.17210 0.77146 0.83732 0.84061 1.90852 1.52822 1.68676 1.33084 1.20126 1.15086 0.94700 0.88169 1.21234 1.00825 0.93734 0.97650 1.18963 1.11075 0.95786 0.93874 1.24549 0.91203 1.00455 1.01030 1.86572 1.33748 1.51123 1.66019 0.94277 0.82701 0.75586 0.78412 1.22274 1.01574 0.89283 0.94862 1.41796 1.47457 1.12920 1.08885 1.21848 0.94512 0.96312 1.03261 1.21423 1.01951 0.95141 0.95582 0.91405 0.91067 0.88606 0.91264 0.91742 0.89989 0.92393 0.88010 0.89561 0.74980 0.85807 0.90497 0.76004 1.22414 1.21103 0.77161 0.71935 0.88947 0.92860 0.92543 0.89537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.44 10.29 71.98 0.74 1.18 16 2 C 0.05 0.09 6.19 71.98 0.45 0.54 16 3 O -0.36 -1.41 10.12 -51.47 -0.52 -1.93 16 4 C 0.46 2.15 7.26 71.23 0.52 2.66 16 5 O -0.54 -6.03 15.73 21.97 0.35 -5.68 16 6 C -0.07 0.18 2.63 -11.54 -0.03 0.15 16 7 H 0.14 -1.05 8.14 -2.39 -0.02 -1.07 16 8 C -0.10 0.27 4.49 30.60 0.14 0.41 16 9 C -0.11 0.83 5.39 30.60 0.16 1.00 16 10 C 0.14 -0.29 2.45 44.99 0.11 -0.18 16 11 H 0.07 0.29 7.58 -2.39 -0.02 0.27 16 12 N -0.71 2.30 5.07 -446.50 -2.27 0.03 16 13 C 0.59 3.40 7.75 86.45 0.67 4.07 16 14 O -0.57 -9.06 16.55 -4.34 -0.07 -9.13 16 15 C -0.07 -0.23 7.06 40.35 0.28 0.05 16 16 C -0.11 -0.84 10.59 22.57 0.24 -0.61 16 17 C -0.19 -0.52 5.46 -20.12 -0.11 -0.63 16 18 C -0.06 -0.05 3.01 71.24 0.21 0.17 16 19 O -0.57 -2.81 12.86 -148.98 -1.92 -4.72 16 20 Si 0.79 -3.40 30.60 68.60 2.10 -1.30 16 21 C 0.06 -0.25 10.45 83.48 0.87 0.62 16 22 N -0.51 2.94 5.99 -183.62 -1.10 1.84 16 23 C -0.12 0.25 5.50 30.59 0.17 0.42 16 24 C -0.10 0.15 5.14 30.59 0.16 0.31 16 25 H 0.07 -0.18 8.14 -2.39 -0.02 -0.20 16 26 H 0.07 -0.24 8.14 -2.39 -0.02 -0.26 16 27 H 0.10 -0.55 8.14 -2.38 -0.02 -0.57 16 28 H 0.07 0.12 8.13 -2.39 -0.02 0.10 16 29 H 0.06 0.18 8.13 -2.39 -0.02 0.16 16 30 H 0.08 -0.20 8.10 -2.39 -0.02 -0.22 16 31 H 0.06 0.09 8.10 -2.39 -0.02 0.07 16 32 H 0.10 -1.27 8.14 -2.39 -0.02 -1.29 16 33 H 0.09 -0.69 8.14 -2.39 -0.02 -0.71 16 34 H 0.41 -4.65 7.73 -92.71 -0.72 -5.37 16 35 H 0.12 1.45 8.06 -2.91 -0.02 1.43 16 36 H 0.08 -0.08 7.96 -2.39 -0.02 -0.10 16 37 H 0.39 -1.26 8.74 -74.06 -0.65 -1.90 16 38 H -0.30 -0.39 7.11 99.48 0.71 0.31 16 39 H -0.28 -0.16 7.11 99.48 0.71 0.55 16 40 H 0.21 -2.51 6.21 -2.91 -0.02 -2.53 16 41 H 0.44 -6.32 8.19 -92.71 -0.76 -7.07 16 42 H 0.09 -0.59 8.14 -2.39 -0.02 -0.61 16 43 H 0.05 0.19 8.14 -2.39 -0.02 0.17 16 44 H 0.06 0.11 8.14 -2.39 -0.02 0.09 16 45 H 0.09 -0.17 8.11 -2.39 -0.02 -0.19 16 Total: 0.00 -29.75 373.11 0.09 -29.66 By element: Atomic # 1 Polarization: -17.86 SS G_CDS: -1.06 Total: -18.92 kcal Atomic # 6 Polarization: 5.57 SS G_CDS: 4.58 Total: 10.15 kcal Atomic # 7 Polarization: 5.24 SS G_CDS: -3.37 Total: 1.88 kcal Atomic # 8 Polarization: -19.30 SS G_CDS: -2.16 Total: -21.46 kcal Atomic # 14 Polarization: -3.40 SS G_CDS: 2.10 Total: -1.30 kcal Total: -29.75 0.09 -29.66 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14589458_10543058.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.748 kcal (2) G-P(sol) polarization free energy of solvation -29.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.498 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.658 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds