Wall clock time and date at job start Sun Mar 7 2021 02:27:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.45193 * 109.46902 * 2 1 4 4 C 1.34238 * 116.99811 * 179.97438 * 3 2 1 5 5 O 1.20825 * 119.99570 * 0.02562 * 4 3 2 6 6 C 1.50696 * 119.99784 * 179.72330 * 4 3 2 7 7 H 1.09007 * 109.47211 * 60.27766 * 6 4 3 8 8 C 1.53009 * 109.46899 * 180.27434 * 6 4 3 9 9 C 1.53004 * 109.46930 * 180.02562 * 8 6 4 10 10 C 1.53001 * 109.47272 * 300.00051 * 9 8 6 11 11 H 1.08999 * 109.46888 * 300.00275 * 10 9 8 12 12 N 1.46500 * 109.47107 * 180.02562 * 10 9 8 13 13 C 1.34775 * 119.99612 * 154.99986 * 12 10 9 14 14 O 1.21689 * 120.00238 * 354.41399 * 13 12 10 15 15 C 1.46681 * 119.99416 * 174.41293 * 13 12 10 16 16 C 1.37871 * 126.23529 * 4.72411 * 15 13 12 17 17 C 1.39834 * 107.08570 * 179.97438 * 16 15 13 18 18 C 1.50700 * 126.06808 * 180.02562 * 17 16 15 19 19 O 1.42899 * 109.47016 * 299.99205 * 18 17 16 20 20 Si 1.86303 * 109.47022 * 179.97438 * 18 17 16 21 21 C 1.35457 * 107.86526 * 359.97438 * 17 16 15 22 22 N 1.35539 * 108.86998 * 359.77463 * 21 17 16 23 23 C 1.46500 * 125.67603 * 180.26302 * 22 21 17 24 24 C 1.53002 * 109.46727 * 60.00051 * 10 9 8 25 25 C 1.52999 * 109.47541 * 299.99598 * 24 10 9 26 26 H 1.09004 * 109.47035 * 60.00196 * 1 2 3 27 27 H 1.09003 * 109.47228 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47723 * 300.00361 * 1 2 3 29 29 H 1.09005 * 109.47140 * 239.99606 * 2 1 3 30 30 H 1.09005 * 109.46605 * 120.00124 * 2 1 3 31 31 H 1.08995 * 109.46831 * 300.00414 * 8 6 4 32 32 H 1.08993 * 109.46787 * 60.00210 * 8 6 4 33 33 H 1.09000 * 109.46610 * 60.00515 * 9 8 6 34 34 H 1.09002 * 109.46754 * 180.02562 * 9 8 6 35 35 H 0.97000 * 119.99702 * 335.00337 * 12 10 9 36 36 H 1.07998 * 126.45884 * 359.97438 * 16 15 13 37 37 H 1.08998 * 109.47046 * 59.99825 * 18 17 16 38 38 H 0.96694 * 114.00031 * 300.00284 * 19 18 17 39 39 H 1.48498 * 110.00190 * 58.67784 * 20 18 17 40 40 H 1.48504 * 110.00035 * 179.97438 * 20 18 17 41 41 H 1.07995 * 125.56445 * 179.97438 * 21 17 16 42 42 H 1.09006 * 109.46911 * 270.86854 * 23 22 21 43 43 H 1.08997 * 109.47345 * 30.87156 * 23 22 21 44 44 H 1.09002 * 109.46923 * 150.87087 * 23 22 21 45 45 H 1.08999 * 109.47253 * 60.00448 * 24 10 9 46 46 H 1.09008 * 109.46919 * 179.97438 * 24 10 9 47 47 H 1.08999 * 109.47541 * 300.00673 * 25 24 10 48 48 H 1.09002 * 109.47092 * 180.02562 * 25 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3448 1.5448 0.0005 5 8 4.0807 0.5866 0.0005 6 6 3.9207 2.9374 -0.0057 7 1 3.5878 3.4723 0.8838 8 6 5.4487 2.8573 -0.0106 9 6 6.0334 4.2711 -0.0164 10 6 5.5577 5.0148 -1.2660 11 1 5.8906 4.4802 -2.1556 12 7 6.1181 6.3683 -1.2717 13 6 6.2777 7.0266 -2.4369 14 8 6.0526 6.4614 -3.4908 15 6 6.7228 8.4242 -2.4346 16 6 7.0998 9.1576 -1.3296 17 6 7.4477 10.4339 -1.7828 18 6 7.9243 11.5797 -0.9277 19 8 6.9195 11.9060 0.0345 20 14 8.2574 13.0623 -2.0056 21 6 7.2813 10.4573 -3.1269 22 7 6.8463 9.2406 -3.5360 23 6 6.5534 8.8588 -4.9197 24 6 4.0298 5.0948 -1.2610 25 6 3.4449 3.6810 -1.2554 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 1.8934 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 5.7875 2.3278 0.8798 32 1 5.7815 2.3224 -0.9001 33 1 5.7005 4.8055 0.8734 34 1 7.1219 4.2140 -0.0203 35 1 6.3743 6.7907 -0.4369 36 1 7.1223 8.8116 -0.3068 37 1 8.8408 11.2920 -0.4128 38 1 6.0747 12.1718 -0.3537 39 1 7.0237 13.4452 -2.7381 40 1 8.7275 14.1994 -1.1742 41 1 7.4682 11.3058 -3.7683 42 1 5.5115 9.0856 -5.1464 43 1 7.2019 9.4162 -5.5955 44 1 6.7286 7.7905 -5.0467 45 1 3.6968 5.6293 -0.3713 46 1 3.6908 5.6250 -2.1511 47 1 3.7779 3.1465 -2.1450 48 1 2.3564 3.7381 -1.2523 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14589458_10803934.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 02:27:14 Heat of formation + Delta-G solvation = -114.345777 kcal Electronic energy + Delta-G solvation = -29303.839566 eV Core-core repulsion = 25132.823197 eV Total energy + Delta-G solvation = -4171.016369 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 337.177 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.54768 -41.85344 -40.61355 -38.96509 -37.82080 -37.66239 -35.51342 -33.86468 -32.79265 -31.85905 -31.72507 -30.08043 -28.28011 -25.95897 -25.45624 -24.09300 -23.84542 -23.16711 -21.91243 -21.27318 -20.97830 -20.30762 -18.89671 -18.71753 -17.80981 -17.69634 -17.62952 -17.14580 -16.82044 -16.64930 -15.97020 -15.83080 -15.55289 -15.41426 -15.15895 -14.96760 -14.93363 -14.58762 -14.39373 -14.14476 -13.99259 -13.81461 -13.50329 -13.46736 -13.29296 -13.21366 -13.12771 -12.95891 -12.76872 -12.53573 -12.43724 -12.39203 -12.20926 -11.78480 -11.64154 -11.55095 -11.47874 -11.35971 -11.09428 -10.46001 -10.17655 -9.67539 -9.24876 -4.85026 0.41915 1.08068 1.39020 1.56851 1.60137 1.64289 1.69670 2.05189 2.29405 2.32977 3.44258 3.51551 3.56618 3.61243 3.75014 3.86270 3.90450 3.95814 4.02030 4.05064 4.06116 4.15818 4.25221 4.28097 4.30523 4.31366 4.36936 4.41160 4.42296 4.59601 4.73302 4.74146 4.75998 4.81440 4.82073 4.87296 4.91562 5.02776 5.05821 5.08253 5.13466 5.20155 5.23036 5.28009 5.41584 5.46684 5.69239 5.90785 6.17848 6.48323 6.63358 6.64342 7.13536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.053 3.947 3 O -0.360 6.360 4 C 0.464 3.536 5 O -0.541 6.541 6 C -0.075 4.075 7 H 0.137 0.863 8 C -0.098 4.098 9 C -0.115 4.115 10 C 0.146 3.854 11 H 0.068 0.932 12 N -0.702 5.702 13 C 0.588 3.412 14 O -0.583 6.583 15 C -0.079 4.079 16 C -0.110 4.110 17 C -0.217 4.217 18 C -0.043 4.043 19 O -0.551 6.551 20 Si 0.765 3.235 21 C 0.034 3.966 22 N -0.413 5.413 23 C 0.060 3.940 24 C -0.119 4.119 25 C -0.101 4.101 26 H 0.068 0.932 27 H 0.095 0.905 28 H 0.070 0.930 29 H 0.065 0.935 30 H 0.068 0.932 31 H 0.080 0.920 32 H 0.059 0.941 33 H 0.098 0.902 34 H 0.083 0.917 35 H 0.416 0.584 36 H 0.159 0.841 37 H 0.120 0.880 38 H 0.384 0.616 39 H -0.281 1.281 40 H -0.309 1.309 41 H 0.199 0.801 42 H 0.079 0.921 43 H 0.114 0.886 44 H 0.086 0.914 45 H 0.089 0.911 46 H 0.055 0.945 47 H 0.058 0.942 48 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.638 2.716 0.222 2.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.020 4.020 3 O -0.277 6.277 4 C 0.308 3.692 5 O -0.430 6.430 6 C -0.094 4.094 7 H 0.155 0.845 8 C -0.136 4.136 9 C -0.152 4.152 10 C 0.041 3.959 11 H 0.087 0.913 12 N -0.353 5.353 13 C 0.377 3.623 14 O -0.465 6.465 15 C -0.192 4.192 16 C -0.136 4.136 17 C -0.223 4.223 18 C -0.153 4.153 19 O -0.358 6.358 20 Si 0.671 3.329 21 C -0.103 4.103 22 N -0.085 5.085 23 C -0.080 4.080 24 C -0.158 4.158 25 C -0.140 4.140 26 H 0.087 0.913 27 H 0.114 0.886 28 H 0.089 0.911 29 H 0.083 0.917 30 H 0.087 0.913 31 H 0.098 0.902 32 H 0.078 0.922 33 H 0.116 0.884 34 H 0.102 0.898 35 H 0.253 0.747 36 H 0.176 0.824 37 H 0.137 0.863 38 H 0.233 0.767 39 H -0.208 1.208 40 H -0.237 1.237 41 H 0.215 0.785 42 H 0.098 0.902 43 H 0.133 0.867 44 H 0.105 0.895 45 H 0.108 0.892 46 H 0.074 0.926 47 H 0.077 0.923 48 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -0.456 2.506 -0.663 2.631 hybrid contribution -1.026 -0.321 0.617 1.239 sum -1.482 2.185 -0.046 2.640 Atomic orbital electron populations 1.21823 0.90680 1.04242 1.03748 1.23240 0.96930 0.79461 1.02388 1.86517 1.24335 1.33354 1.83477 1.24332 0.80532 0.93335 0.70985 1.90670 1.61133 1.44478 1.46756 1.21262 0.96591 0.88283 1.03222 0.84537 1.21355 0.91494 0.97171 1.03600 1.21748 1.01793 0.94410 0.97278 1.21044 0.93256 0.81714 0.99867 0.91337 1.45592 1.64247 1.16858 1.08633 1.17191 0.76394 0.84580 0.84129 1.90774 1.53986 1.69664 1.32121 1.20096 1.17794 0.93190 0.88083 1.21417 1.01543 0.93149 0.97506 1.19831 1.11853 0.97104 0.93504 1.24462 0.93376 1.01781 0.95703 1.86551 1.25468 1.88525 1.35305 0.94387 0.83945 0.74233 0.80351 1.22314 1.03138 0.88992 0.95888 1.44028 1.47281 1.09696 1.07475 1.22442 1.03371 1.03988 0.78232 1.21842 0.94354 0.96318 1.03243 1.21417 1.01941 0.95095 0.95498 0.91334 0.88614 0.91118 0.91673 0.91346 0.90174 0.92233 0.88369 0.89815 0.74663 0.82361 0.86264 0.76740 1.20788 1.23696 0.78473 0.90233 0.86744 0.89504 0.89218 0.92598 0.92343 0.89443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.45 10.29 71.98 0.74 1.20 16 2 C 0.05 0.09 6.19 71.98 0.45 0.54 16 3 O -0.36 -1.40 10.12 -51.49 -0.52 -1.92 16 4 C 0.46 2.23 7.26 71.23 0.52 2.75 16 5 O -0.54 -6.14 15.73 21.97 0.35 -5.79 16 6 C -0.07 0.14 2.63 -11.54 -0.03 0.11 16 7 H 0.14 -0.91 8.14 -2.38 -0.02 -0.93 16 8 C -0.10 0.18 4.49 30.60 0.14 0.32 16 9 C -0.11 0.65 5.39 30.60 0.16 0.81 16 10 C 0.15 -0.21 2.50 44.99 0.11 -0.10 16 11 H 0.07 0.29 7.50 -2.39 -0.02 0.27 16 12 N -0.70 0.97 5.06 -446.50 -2.26 -1.29 16 13 C 0.59 2.98 7.74 86.45 0.67 3.65 16 14 O -0.58 -6.84 14.26 -4.31 -0.06 -6.90 16 15 C -0.08 -0.25 6.89 40.35 0.28 0.03 16 16 C -0.11 -0.02 10.29 22.57 0.23 0.21 16 17 C -0.22 0.20 5.44 -20.12 -0.11 0.09 16 18 C -0.04 0.08 3.02 71.24 0.22 0.30 16 19 O -0.55 -0.78 12.88 -148.98 -1.92 -2.69 16 20 Si 0.77 -2.71 30.59 68.60 2.10 -0.61 16 21 C 0.03 -0.07 9.94 83.48 0.83 0.76 16 22 N -0.41 -0.53 3.16 -534.30 -1.69 -2.22 16 23 C 0.06 -0.09 10.65 127.77 1.36 1.27 16 24 C -0.12 0.27 5.50 30.59 0.17 0.43 16 25 C -0.10 0.18 5.13 30.59 0.16 0.34 16 26 H 0.07 -0.20 8.14 -2.38 -0.02 -0.22 16 27 H 0.10 -0.56 8.14 -2.39 -0.02 -0.58 16 28 H 0.07 -0.24 8.14 -2.39 -0.02 -0.25 16 29 H 0.06 0.17 8.13 -2.38 -0.02 0.15 16 30 H 0.07 0.13 8.13 -2.38 -0.02 0.11 16 31 H 0.08 -0.10 8.10 -2.39 -0.02 -0.12 16 32 H 0.06 0.12 8.10 -2.39 -0.02 0.10 16 33 H 0.10 -0.96 8.14 -2.39 -0.02 -0.98 16 34 H 0.08 -0.48 8.14 -2.39 -0.02 -0.50 16 35 H 0.42 -2.74 7.50 -92.71 -0.70 -3.44 16 36 H 0.16 -0.58 7.45 -2.91 -0.02 -0.60 16 37 H 0.12 -0.36 7.96 -2.39 -0.02 -0.38 16 38 H 0.38 -1.44 8.70 -74.06 -0.64 -2.08 16 39 H -0.28 0.01 7.11 99.48 0.71 0.72 16 40 H -0.31 -1.55 7.11 99.48 0.71 -0.85 16 41 H 0.20 -1.66 6.19 -2.91 -0.02 -1.68 16 42 H 0.08 -0.18 8.14 -2.38 -0.02 -0.20 16 43 H 0.11 -0.87 8.14 -2.39 -0.02 -0.89 16 44 H 0.09 0.28 6.19 -2.39 -0.01 0.27 16 45 H 0.09 -0.50 8.14 -2.39 -0.02 -0.52 16 46 H 0.06 0.12 8.14 -2.38 -0.02 0.10 16 47 H 0.06 0.07 8.14 -2.39 -0.02 0.05 16 48 H 0.09 -0.22 8.11 -2.39 -0.02 -0.24 16 Total: 0.00 -22.96 390.99 1.55 -21.41 By element: Atomic # 1 Polarization: -12.35 SS G_CDS: -0.33 Total: -12.68 kcal Atomic # 6 Polarization: 6.81 SS G_CDS: 5.89 Total: 12.70 kcal Atomic # 7 Polarization: 0.44 SS G_CDS: -3.95 Total: -3.51 kcal Atomic # 8 Polarization: -15.15 SS G_CDS: -2.16 Total: -17.31 kcal Atomic # 14 Polarization: -2.71 SS G_CDS: 2.10 Total: -0.61 kcal Total: -22.96 1.55 -21.41 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14589458_10803934.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.935 kcal (2) G-P(sol) polarization free energy of solvation -22.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.554 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.411 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds