Wall clock time and date at job start Sun Mar 7 2021 02:27:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.45199 * 109.47323 * 2 1 4 4 C 1.34232 * 116.99925 * 179.97438 * 3 2 1 5 5 O 1.20822 * 119.99906 * 0.02562 * 4 3 2 6 6 C 1.50696 * 119.99767 * 180.02562 * 4 3 2 7 7 H 1.09000 * 109.47201 * 60.00382 * 6 4 3 8 8 C 1.53005 * 109.46754 * 180.02562 * 6 4 3 9 9 C 1.53001 * 109.47011 * 179.97438 * 8 6 4 10 10 C 1.52999 * 109.47214 * 300.00065 * 9 8 6 11 11 H 1.09000 * 109.47157 * 300.00015 * 10 9 8 12 12 N 1.46508 * 109.47153 * 179.97438 * 10 9 8 13 13 C 1.34770 * 119.99684 * 155.27812 * 12 10 9 14 14 O 1.21696 * 120.00238 * 354.84734 * 13 12 10 15 15 C 1.46678 * 119.99801 * 174.85098 * 13 12 10 16 16 C 1.37868 * 126.23546 * 4.97975 * 15 13 12 17 17 C 1.39839 * 107.08617 * 180.02562 * 16 15 13 18 18 C 1.35443 * 107.86472 * 0.02562 * 17 16 15 19 19 C 1.50704 * 125.56336 * 180.02562 * 18 17 16 20 20 O 1.42903 * 109.47249 * 209.97413 * 19 18 17 21 21 Si 1.86300 * 109.46894 * 329.96975 * 19 18 17 22 22 N 1.35535 * 108.87700 * 359.72841 * 18 17 16 23 23 C 1.46497 * 125.68339 * 180.30408 * 22 18 17 24 24 C 1.53005 * 109.47184 * 60.00041 * 10 9 8 25 25 C 1.52999 * 109.47342 * 300.00156 * 6 4 3 26 26 H 1.08995 * 109.47449 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.46822 * 299.99700 * 1 2 3 28 28 H 1.09004 * 109.47065 * 59.99191 * 1 2 3 29 29 H 1.09002 * 109.46822 * 240.00300 * 2 1 3 30 30 H 1.08997 * 109.47351 * 120.00558 * 2 1 3 31 31 H 1.09000 * 109.47095 * 60.00146 * 8 6 4 32 32 H 1.08994 * 109.47419 * 299.99877 * 8 6 4 33 33 H 1.08994 * 109.47373 * 179.97438 * 9 8 6 34 34 H 1.09000 * 109.47071 * 60.00133 * 9 8 6 35 35 H 0.96991 * 120.00091 * 335.00030 * 12 10 9 36 36 H 1.07997 * 126.45311 * 0.03801 * 16 15 13 37 37 H 1.08004 * 126.06362 * 180.02562 * 17 16 15 38 38 H 1.08996 * 109.47402 * 89.97144 * 19 18 17 39 39 H 0.96694 * 114.00347 * 179.97438 * 20 19 18 40 40 H 1.48498 * 110.00106 * 300.00180 * 21 19 18 41 41 H 1.48500 * 109.99865 * 61.32345 * 21 19 18 42 42 H 1.08997 * 109.47403 * 275.05282 * 23 22 18 43 43 H 1.08995 * 109.47097 * 35.05310 * 23 22 18 44 44 H 1.08997 * 109.47003 * 155.05435 * 23 22 18 45 45 H 1.09000 * 109.47095 * 59.99936 * 24 10 9 46 46 H 1.09002 * 109.47153 * 179.97438 * 24 10 9 47 47 H 1.09000 * 109.47157 * 300.00252 * 25 6 4 48 48 H 1.08994 * 109.47074 * 59.99903 * 25 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3448 1.5447 0.0005 5 8 4.0807 0.5865 0.0005 6 6 3.9208 2.9373 0.0012 7 1 3.5846 3.4692 0.8912 8 6 5.4487 2.8571 0.0010 9 6 6.0336 4.2709 0.0010 10 6 5.5620 5.0179 -1.2481 11 1 5.8978 4.4858 -2.1382 12 7 6.1216 6.3719 -1.2478 13 6 6.2798 7.0358 -2.4099 14 8 6.0467 6.4780 -3.4661 15 6 6.7332 8.4308 -2.4017 16 6 7.1243 9.1541 -1.2951 17 6 7.4746 10.4319 -1.7422 18 6 7.2949 10.4663 -3.0843 19 6 7.5543 11.6553 -3.9731 20 8 6.6678 11.6151 -5.0933 21 14 7.2677 13.2244 -3.0106 22 7 6.8500 9.2548 -3.4983 23 6 6.5422 8.8847 -4.8819 24 6 4.0341 5.0981 -1.2480 25 6 3.4497 3.6847 -1.2480 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5140 -0.8899 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8899 31 1 5.7846 2.3254 -0.8892 32 1 5.7847 2.3246 0.8907 33 1 7.1221 4.2138 0.0014 34 1 5.6978 4.8030 0.8911 35 1 6.3743 6.7920 -0.4110 36 1 7.1545 8.8003 -0.2752 37 1 7.8262 11.2467 -1.1266 38 1 8.5856 11.6280 -4.3248 39 1 6.7785 12.3522 -5.7092 40 1 5.8650 13.2737 -2.5255 41 1 8.2054 13.2935 -1.8611 42 1 5.5222 9.1858 -5.1202 43 1 7.2362 9.3874 -5.5554 44 1 6.6392 7.8054 -4.9994 45 1 3.6982 5.6302 -0.3580 46 1 3.6981 5.6307 -2.1378 47 1 3.7859 3.1528 -2.1380 48 1 2.3612 3.7417 -1.2484 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14589458_10803936.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 02:27:18 Heat of formation + Delta-G solvation = -115.132051 kcal Electronic energy + Delta-G solvation = -29408.489075 eV Core-core repulsion = 25237.438611 eV Total energy + Delta-G solvation = -4171.050464 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 337.177 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.68765 -41.87619 -40.69697 -39.01210 -37.72495 -37.64422 -35.58388 -33.89855 -32.81880 -32.01132 -31.88541 -30.56884 -27.57187 -27.00244 -25.32255 -23.89437 -23.80486 -23.05036 -22.03019 -21.46961 -21.02057 -20.27150 -18.91367 -18.70399 -18.33863 -17.70795 -17.65866 -17.33277 -17.02718 -16.70175 -16.04886 -15.82488 -15.42433 -15.39861 -15.06151 -14.96346 -14.88051 -14.63492 -14.47428 -14.18006 -13.90135 -13.83518 -13.65161 -13.52596 -13.37475 -13.28986 -13.11398 -12.97179 -12.78827 -12.75280 -12.54706 -12.43699 -12.23333 -11.95993 -11.66375 -11.56809 -11.50166 -11.38819 -11.12386 -10.59045 -10.22353 -9.90046 -9.18757 -4.93088 0.27375 1.06625 1.13408 1.47914 1.59425 1.67031 1.73532 2.08814 2.22359 2.27542 3.21318 3.42018 3.48217 3.58160 3.66584 3.73277 3.86744 3.88284 3.94501 4.00656 4.03461 4.13271 4.23457 4.25360 4.28489 4.29392 4.29899 4.38621 4.39366 4.46395 4.55759 4.67708 4.71463 4.79927 4.86039 4.86361 4.88287 4.98092 5.00352 5.03557 5.06147 5.11978 5.20225 5.23989 5.38672 5.43341 5.61095 5.86913 6.02105 6.42026 6.62901 6.82462 7.06543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.053 3.947 3 O -0.360 6.360 4 C 0.464 3.536 5 O -0.540 6.540 6 C -0.074 4.074 7 H 0.138 0.862 8 C -0.098 4.098 9 C -0.114 4.114 10 C 0.145 3.855 11 H 0.067 0.933 12 N -0.699 5.699 13 C 0.589 3.411 14 O -0.583 6.583 15 C -0.082 4.082 16 C -0.125 4.125 17 C -0.232 4.232 18 C 0.047 3.953 19 C -0.065 4.065 20 O -0.567 6.567 21 Si 0.819 3.181 22 N -0.402 5.402 23 C 0.079 3.921 24 C -0.120 4.120 25 C -0.101 4.101 26 H 0.096 0.904 27 H 0.070 0.930 28 H 0.067 0.933 29 H 0.065 0.935 30 H 0.069 0.931 31 H 0.058 0.942 32 H 0.081 0.919 33 H 0.084 0.916 34 H 0.100 0.900 35 H 0.417 0.583 36 H 0.178 0.822 37 H 0.155 0.845 38 H 0.102 0.898 39 H 0.409 0.591 40 H -0.310 1.310 41 H -0.279 1.279 42 H 0.072 0.928 43 H 0.101 0.899 44 H 0.085 0.915 45 H 0.091 0.909 46 H 0.053 0.947 47 H 0.057 0.943 48 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.237 6.187 1.823 6.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.020 4.020 3 O -0.277 6.277 4 C 0.308 3.692 5 O -0.430 6.430 6 C -0.093 4.093 7 H 0.156 0.844 8 C -0.136 4.136 9 C -0.151 4.151 10 C 0.041 3.959 11 H 0.086 0.914 12 N -0.350 5.350 13 C 0.378 3.622 14 O -0.465 6.465 15 C -0.195 4.195 16 C -0.151 4.151 17 C -0.256 4.256 18 C -0.072 4.072 19 C -0.173 4.173 20 O -0.378 6.378 21 Si 0.722 3.278 22 N -0.074 5.074 23 C -0.061 4.061 24 C -0.159 4.159 25 C -0.140 4.140 26 H 0.114 0.886 27 H 0.089 0.911 28 H 0.086 0.914 29 H 0.083 0.917 30 H 0.087 0.913 31 H 0.077 0.923 32 H 0.100 0.900 33 H 0.103 0.897 34 H 0.119 0.881 35 H 0.255 0.745 36 H 0.196 0.804 37 H 0.173 0.827 38 H 0.119 0.881 39 H 0.262 0.738 40 H -0.238 1.238 41 H -0.206 1.206 42 H 0.090 0.910 43 H 0.119 0.881 44 H 0.104 0.896 45 H 0.109 0.891 46 H 0.072 0.928 47 H 0.076 0.924 48 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -0.260 5.125 1.740 5.419 hybrid contribution 0.138 -0.979 0.078 0.992 sum -0.122 4.146 1.818 4.529 Atomic orbital electron populations 1.21823 0.90675 1.04255 1.03743 1.23242 0.96937 0.79443 1.02399 1.86517 1.24323 1.33381 1.83469 1.24315 0.80541 0.93314 0.70995 1.90669 1.61128 1.44465 1.46748 1.21258 0.96608 0.88287 1.03166 0.84408 1.21357 0.91487 0.97133 1.03647 1.21744 1.01853 0.94385 0.97147 1.21080 0.93292 0.81523 1.00038 0.91426 1.45553 1.64274 1.16738 1.08451 1.17105 0.76486 0.84241 0.84331 1.90766 1.53903 1.69838 1.31977 1.20279 1.17462 0.93531 0.88200 1.21650 1.01941 0.93274 0.98193 1.20816 1.12128 0.99825 0.92820 1.20801 1.04655 0.86693 0.95070 1.24804 0.97160 1.02455 0.92880 1.86413 1.60299 1.54151 1.36908 0.94363 0.76238 0.77523 0.79658 1.43973 1.46691 1.08983 1.07758 1.22223 1.02828 1.02673 0.78419 1.21842 0.94357 0.96425 1.03230 1.21405 1.01976 0.94990 0.95583 0.88585 0.91094 0.91373 0.91702 0.91291 0.92301 0.90005 0.89746 0.88149 0.74479 0.80448 0.82729 0.88050 0.73838 1.23838 1.20550 0.90988 0.88066 0.89599 0.89052 0.92847 0.92414 0.89421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.40 10.29 71.98 0.74 1.14 16 2 C 0.05 0.11 6.19 71.98 0.45 0.56 16 3 O -0.36 -1.57 10.12 -51.43 -0.52 -2.09 16 4 C 0.46 2.44 7.26 71.23 0.52 2.96 16 5 O -0.54 -6.35 15.73 21.98 0.35 -6.00 16 6 C -0.07 0.11 2.63 -11.54 -0.03 0.08 16 7 H 0.14 -0.88 8.14 -2.39 -0.02 -0.90 16 8 C -0.10 0.14 4.49 30.60 0.14 0.27 16 9 C -0.11 0.59 5.39 30.59 0.16 0.75 16 10 C 0.14 -0.03 2.49 44.99 0.11 0.08 16 11 H 0.07 0.38 7.52 -2.39 -0.02 0.36 16 12 N -0.70 -0.13 5.06 -446.48 -2.26 -2.39 16 13 C 0.59 4.81 7.74 86.45 0.67 5.48 16 14 O -0.58 -8.81 14.19 -4.34 -0.06 -8.87 16 15 C -0.08 -0.64 6.89 40.35 0.28 -0.36 16 16 C -0.12 -0.40 10.35 22.57 0.23 -0.17 16 17 C -0.23 -1.08 9.37 22.01 0.21 -0.88 16 18 C 0.05 0.27 6.17 41.34 0.26 0.52 16 19 C -0.06 0.11 2.89 71.24 0.21 0.32 16 20 O -0.57 1.45 10.50 -148.98 -1.56 -0.12 16 21 Si 0.82 -3.31 31.22 68.60 2.14 -1.17 16 22 N -0.40 -3.47 3.16 -519.73 -1.64 -5.12 16 23 C 0.08 0.55 9.37 127.77 1.20 1.74 16 24 C -0.12 0.11 5.49 30.58 0.17 0.28 16 25 C -0.10 0.09 5.13 30.58 0.16 0.24 16 26 H 0.10 -0.53 8.14 -2.39 -0.02 -0.55 16 27 H 0.07 -0.21 8.14 -2.39 -0.02 -0.23 16 28 H 0.07 -0.17 8.14 -2.39 -0.02 -0.19 16 29 H 0.06 0.19 8.13 -2.39 -0.02 0.17 16 30 H 0.07 0.15 8.13 -2.39 -0.02 0.13 16 31 H 0.06 0.15 8.10 -2.39 -0.02 0.13 16 32 H 0.08 -0.09 8.10 -2.39 -0.02 -0.11 16 33 H 0.08 -0.45 8.14 -2.39 -0.02 -0.47 16 34 H 0.10 -0.97 8.14 -2.39 -0.02 -0.99 16 35 H 0.42 -2.49 7.50 -92.71 -0.70 -3.19 16 36 H 0.18 -0.79 7.45 -2.91 -0.02 -0.82 16 37 H 0.16 0.26 6.70 -2.91 -0.02 0.24 16 38 H 0.10 -0.60 7.96 -2.39 -0.02 -0.62 16 39 H 0.41 -5.49 8.74 -74.06 -0.65 -6.13 16 40 H -0.31 -1.72 7.11 99.48 0.71 -1.01 16 41 H -0.28 -0.01 6.87 99.48 0.68 0.68 16 42 H 0.07 0.52 8.14 -2.39 -0.02 0.51 16 43 H 0.10 0.33 7.15 -2.39 -0.02 0.31 16 44 H 0.09 0.87 5.97 -2.39 -0.01 0.85 16 45 H 0.09 -0.43 8.14 -2.39 -0.02 -0.45 16 46 H 0.05 0.22 8.14 -2.39 -0.02 0.20 16 47 H 0.06 0.13 8.14 -2.39 -0.02 0.11 16 48 H 0.09 -0.14 8.11 -2.39 -0.02 -0.16 16 Total: 0.00 -26.37 387.10 1.54 -24.83 By element: Atomic # 1 Polarization: -11.75 SS G_CDS: -0.35 Total: -12.11 kcal Atomic # 6 Polarization: 7.57 SS G_CDS: 5.46 Total: 13.02 kcal Atomic # 7 Polarization: -3.60 SS G_CDS: -3.90 Total: -7.51 kcal Atomic # 8 Polarization: -15.27 SS G_CDS: -1.80 Total: -17.08 kcal Atomic # 14 Polarization: -3.31 SS G_CDS: 2.14 Total: -1.17 kcal Total: -26.37 1.54 -24.83 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14589458_10803936.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.302 kcal (2) G-P(sol) polarization free energy of solvation -26.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.830 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds