Wall clock time and date at job start Sun Mar 7 2021 02:27:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 O 1.45195 * 109.47576 * 2 1 4 4 C 1.34227 * 117.00643 * 180.02562 * 3 2 1 5 5 O 1.20826 * 119.99484 * 359.97438 * 4 3 2 6 6 C 1.50694 * 120.00383 * 179.97438 * 4 3 2 7 7 H 1.08997 * 109.47050 * 299.99501 * 6 4 3 8 8 C 1.53000 * 109.47261 * 59.99753 * 6 4 3 9 9 C 1.52994 * 109.47066 * 179.97438 * 8 6 4 10 10 C 1.53002 * 109.47419 * 299.99893 * 9 8 6 11 11 H 1.08997 * 109.47020 * 299.99993 * 10 9 8 12 12 N 1.46500 * 109.46928 * 179.97438 * 10 9 8 13 13 C 1.34770 * 119.99945 * 85.00497 * 12 10 9 14 14 O 1.21719 * 120.00509 * 359.97438 * 13 12 10 15 15 C 1.46572 * 119.99891 * 179.97438 * 13 12 10 16 16 C 1.40855 * 126.57629 * 180.02562 * 15 13 12 17 17 C 1.40093 * 132.87093 * 359.96875 * 16 15 13 18 18 C 1.36451 * 119.25434 * 179.97438 * 17 16 15 19 19 C 1.50702 * 120.29551 * 180.02562 * 18 17 16 20 20 O 1.42899 * 109.47072 * 119.99774 * 19 18 17 21 21 Si 1.86301 * 109.46897 * 239.99964 * 19 18 17 22 22 C 1.40159 * 119.40983 * 359.97438 * 18 17 16 23 23 C 1.35184 * 120.31838 * 0.02562 * 22 18 17 24 24 N 1.36240 * 120.70993 * 359.95590 * 23 22 18 25 25 N 1.40011 * 132.01371 * 180.33297 * 24 23 22 26 26 C 1.30742 * 109.60548 * 180.16264 * 25 24 23 27 27 C 1.53000 * 109.47062 * 60.00378 * 10 9 8 28 28 C 1.53002 * 109.47080 * 180.02562 * 6 4 3 29 29 H 1.09008 * 109.47128 * 300.00576 * 1 2 3 30 30 H 1.08992 * 109.47426 * 60.00125 * 1 2 3 31 31 H 1.09001 * 109.47563 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.47319 * 239.99303 * 2 1 3 33 33 H 1.09004 * 109.47009 * 119.99803 * 2 1 3 34 34 H 1.08998 * 109.46862 * 299.99968 * 8 6 4 35 35 H 1.09003 * 109.46968 * 60.00213 * 8 6 4 36 36 H 1.08998 * 109.47428 * 179.97438 * 9 8 6 37 37 H 1.09008 * 109.47357 * 60.00245 * 9 8 6 38 38 H 0.97005 * 120.00145 * 264.99925 * 12 10 9 39 39 H 1.07995 * 120.37165 * 0.02562 * 17 16 15 40 40 H 1.09001 * 109.46648 * 359.97438 * 19 18 17 41 41 H 0.96700 * 113.99873 * 180.02562 * 20 19 18 42 42 H 1.48502 * 109.99936 * 178.68376 * 21 19 18 43 43 H 1.48504 * 109.99804 * 299.99432 * 21 19 18 44 44 H 1.08000 * 119.84162 * 180.02562 * 22 18 17 45 45 H 1.08003 * 119.64624 * 179.97438 * 23 22 18 46 46 H 1.08002 * 125.63185 * 179.84462 * 26 25 24 47 47 H 1.09003 * 109.47191 * 59.99604 * 27 10 9 48 48 H 1.08998 * 109.47524 * 179.97438 * 27 10 9 49 49 H 1.08997 * 109.47459 * 59.99843 * 28 6 4 50 50 H 1.09003 * 109.47188 * 299.99810 * 28 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3447 1.5448 -0.0005 5 8 4.0807 0.5865 -0.0005 6 6 3.9207 2.9373 -0.0012 7 1 3.5846 3.4691 -0.8912 8 6 3.4496 3.6847 1.2480 9 6 4.0350 5.0982 1.2476 10 6 5.5629 5.0176 1.2475 11 1 5.8987 4.4855 2.1376 12 7 6.1233 6.3711 1.2466 13 6 6.2873 7.0334 2.4088 14 8 5.9694 6.5071 3.4593 15 6 6.8485 8.3874 2.4079 16 6 7.0792 9.2011 3.5342 17 6 6.8702 9.0110 4.9064 18 6 7.2022 10.0086 5.7760 19 6 6.9877 9.8289 7.2569 20 8 8.2393 9.9438 7.9368 21 14 5.8203 11.1408 7.8789 22 6 7.7454 11.2016 5.2799 23 6 7.9384 11.3631 3.9517 24 7 7.6105 10.3728 3.0755 25 7 7.7120 10.2830 1.6819 26 6 7.2611 9.1224 1.2831 27 6 6.0340 4.2703 -0.0017 28 6 5.4487 2.8571 -0.0023 29 1 -0.3634 0.5140 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 2.3612 3.7417 1.2483 35 1 3.7859 3.1528 2.1381 36 1 3.6991 5.6309 2.1373 37 1 3.6991 5.6304 0.3576 38 1 6.3764 6.7907 0.4094 39 1 6.4517 8.0849 5.2718 40 1 6.5606 8.8439 7.4452 41 1 8.1770 9.8382 8.8960 42 1 5.5756 10.9554 9.3319 43 1 6.3908 12.4887 7.6280 44 1 8.0111 11.9957 5.9620 45 1 8.3574 12.2871 3.5812 46 1 7.2174 8.7825 0.2589 47 1 5.6981 4.8024 -0.8917 48 1 7.1225 4.2132 -0.0021 49 1 5.7839 2.3249 -0.8925 50 1 5.7853 2.3251 0.8875 There are 69 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 69 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14589458_11618758.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 02:27:22 Heat of formation + Delta-G solvation = -57.769549 kcal Electronic energy + Delta-G solvation = -33510.683832 eV Core-core repulsion = 28892.016461 eV Total energy + Delta-G solvation = -4618.667372 eV No. of doubly occupied orbitals = 69 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 374.172 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -43.29370 -41.82783 -40.68406 -39.27385 -38.83562 -37.64247 -37.37626 -35.23333 -34.26265 -32.74305 -32.16760 -31.78358 -31.33559 -29.82637 -27.31926 -25.70227 -24.81545 -23.92538 -23.76672 -23.30283 -22.85107 -21.82156 -21.30638 -20.69922 -19.17906 -18.72238 -18.50328 -18.02630 -17.70296 -17.63650 -17.43619 -16.95979 -16.92586 -16.69301 -15.96396 -15.84940 -15.57421 -15.48624 -15.19620 -14.95243 -14.83805 -14.50124 -14.42494 -14.11866 -14.05103 -14.01454 -13.76268 -13.43456 -13.28470 -13.20870 -13.01864 -12.92683 -12.73357 -12.66450 -12.49944 -12.33362 -12.14686 -12.10836 -11.94338 -11.61960 -11.57546 -11.49314 -11.41407 -11.27502 -10.86917 -10.83287 -10.24607 -10.00879 -8.77775 -4.90500 -0.57252 -0.11646 1.02811 1.06723 1.11937 1.21553 1.60644 1.65435 1.87037 2.06659 2.26740 2.52665 3.02158 3.18591 3.50077 3.51732 3.61599 3.64610 3.68571 3.72619 3.88162 3.95475 3.98983 4.03254 4.05040 4.14690 4.19734 4.23022 4.32728 4.35133 4.36643 4.36949 4.44512 4.48729 4.58321 4.68860 4.78741 4.80148 4.86070 4.90040 5.00534 5.09137 5.11773 5.12621 5.15307 5.17310 5.18846 5.28791 5.32875 5.37531 5.46166 5.61736 5.66171 6.31154 6.52405 6.67977 6.68681 7.37401 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.053 3.947 3 O -0.360 6.360 4 C 0.463 3.537 5 O -0.542 6.542 6 C -0.074 4.074 7 H 0.138 0.862 8 C -0.102 4.102 9 C -0.119 4.119 10 C 0.147 3.853 11 H 0.063 0.937 12 N -0.710 5.710 13 C 0.600 3.400 14 O -0.589 6.589 15 C -0.336 4.336 16 C 0.150 3.850 17 C -0.111 4.111 18 C -0.021 4.021 19 C -0.087 4.087 20 O -0.552 6.552 21 Si 0.765 3.235 22 C -0.147 4.147 23 C 0.112 3.888 24 N -0.274 5.274 25 N -0.341 5.341 26 C 0.132 3.868 27 C -0.114 4.114 28 C -0.099 4.099 29 H 0.068 0.932 30 H 0.070 0.930 31 H 0.095 0.905 32 H 0.068 0.932 33 H 0.064 0.936 34 H 0.086 0.914 35 H 0.056 0.944 36 H 0.057 0.943 37 H 0.090 0.910 38 H 0.414 0.586 39 H 0.156 0.844 40 H 0.094 0.906 41 H 0.400 0.600 42 H -0.275 1.275 43 H -0.274 1.274 44 H 0.176 0.824 45 H 0.202 0.798 46 H 0.238 0.762 47 H 0.100 0.900 48 H 0.082 0.918 49 H 0.078 0.922 50 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.829 3.716 -1.791 5.628 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.020 4.020 3 O -0.276 6.276 4 C 0.308 3.692 5 O -0.432 6.432 6 C -0.093 4.093 7 H 0.156 0.844 8 C -0.140 4.140 9 C -0.157 4.157 10 C 0.042 3.958 11 H 0.082 0.918 12 N -0.361 5.361 13 C 0.390 3.610 14 O -0.471 6.471 15 C -0.351 4.351 16 C 0.029 3.971 17 C -0.131 4.131 18 C -0.027 4.027 19 C -0.195 4.195 20 O -0.362 6.362 21 Si 0.665 3.335 22 C -0.169 4.169 23 C -0.013 4.013 24 N -0.038 5.038 25 N -0.161 5.161 26 C -0.049 4.049 27 C -0.152 4.152 28 C -0.137 4.137 29 H 0.087 0.913 30 H 0.089 0.911 31 H 0.113 0.887 32 H 0.086 0.914 33 H 0.083 0.917 34 H 0.105 0.895 35 H 0.074 0.926 36 H 0.076 0.924 37 H 0.109 0.891 38 H 0.251 0.749 39 H 0.174 0.826 40 H 0.112 0.888 41 H 0.251 0.749 42 H -0.201 1.201 43 H -0.200 1.200 44 H 0.193 0.807 45 H 0.219 0.781 46 H 0.254 0.746 47 H 0.119 0.881 48 H 0.100 0.900 49 H 0.097 0.903 50 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -3.236 4.891 -1.652 6.093 hybrid contribution 0.825 -1.463 0.948 1.929 sum -2.411 3.428 -0.705 4.249 Atomic orbital electron populations 1.21819 0.90662 1.04218 1.03778 1.23231 0.96943 0.79510 1.02338 1.86515 1.24351 1.33297 1.83475 1.24378 0.80512 0.93400 0.70930 1.90668 1.61154 1.44535 1.46826 1.21264 0.96545 0.88164 1.03308 0.84438 1.21426 1.01927 0.95311 0.95344 1.21839 0.94471 0.96060 1.03375 1.20971 0.93293 0.82074 0.99463 0.91842 1.45589 1.65094 1.16698 1.08687 1.16964 0.76515 0.83740 0.83778 1.90755 1.53835 1.69732 1.32741 1.19715 1.24691 0.98839 0.91832 1.19545 0.95655 0.87157 0.94739 1.20639 1.02859 1.00812 0.88763 1.19593 0.94844 0.93031 0.95191 1.24954 0.93227 1.10833 0.90445 1.86525 1.28683 1.95213 1.25784 0.93514 0.84793 0.74870 0.80303 1.21027 1.02451 0.99619 0.93756 1.22097 0.98204 0.93066 0.87954 1.46284 1.39131 1.11397 1.06942 1.77573 1.30544 1.22953 0.85022 1.24653 0.90424 0.88981 1.00843 1.21738 1.01671 0.94286 0.97502 1.21349 0.91565 0.97373 1.03403 0.91305 0.91087 0.88659 0.91387 0.91741 0.89491 0.92562 0.92437 0.89102 0.74866 0.82600 0.88796 0.74850 1.20120 1.19996 0.80721 0.78073 0.74643 0.88146 0.89986 0.90306 0.92488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.46 10.29 71.98 0.74 1.20 16 2 C 0.05 0.09 6.19 71.98 0.45 0.54 16 3 O -0.36 -1.41 10.12 -51.39 -0.52 -1.93 16 4 C 0.46 2.28 7.26 71.23 0.52 2.80 16 5 O -0.54 -6.28 15.73 21.96 0.35 -5.93 16 6 C -0.07 0.14 2.63 -11.54 -0.03 0.11 16 7 H 0.14 -0.96 8.14 -2.39 -0.02 -0.98 16 8 C -0.10 0.17 5.14 30.59 0.16 0.33 16 9 C -0.12 0.27 5.49 30.59 0.17 0.44 16 10 C 0.15 -0.20 2.46 44.99 0.11 -0.09 16 11 H 0.06 0.31 7.58 -2.39 -0.02 0.29 16 12 N -0.71 1.30 5.07 -446.59 -2.26 -0.97 16 13 C 0.60 3.63 7.75 86.42 0.67 4.30 16 14 O -0.59 -7.91 15.37 -4.41 -0.07 -7.98 16 15 C -0.34 -1.74 6.17 -19.90 -0.12 -1.86 16 16 C 0.15 1.05 6.76 39.49 0.27 1.32 16 17 C -0.11 -0.57 9.35 22.30 0.21 -0.36 16 18 C -0.02 -0.03 4.53 -19.81 -0.09 -0.12 16 19 C -0.09 0.19 2.81 71.24 0.20 0.39 16 20 O -0.55 0.24 12.76 -148.98 -1.90 -1.66 16 21 Si 0.76 -3.45 31.97 68.60 2.19 -1.26 16 22 C -0.15 0.11 8.67 22.03 0.19 0.30 16 23 C 0.11 0.00 11.17 83.30 0.93 0.93 16 24 N -0.27 -1.44 3.86 -187.27 -0.72 -2.16 16 25 N -0.34 -1.79 12.57 -56.62 -0.71 -2.50 16 26 C 0.13 0.07 11.44 85.42 0.98 1.05 16 27 C -0.11 0.67 5.39 30.58 0.16 0.84 16 28 C -0.10 0.17 4.49 30.58 0.14 0.31 16 29 H 0.07 -0.20 8.14 -2.38 -0.02 -0.22 16 30 H 0.07 -0.24 8.14 -2.39 -0.02 -0.26 16 31 H 0.09 -0.56 8.14 -2.39 -0.02 -0.58 16 32 H 0.07 0.14 8.13 -2.39 -0.02 0.12 16 33 H 0.06 0.17 8.13 -2.39 -0.02 0.15 16 34 H 0.09 -0.21 8.11 -2.39 -0.02 -0.23 16 35 H 0.06 0.09 8.14 -2.39 -0.02 0.07 16 36 H 0.06 0.14 8.14 -2.39 -0.02 0.12 16 37 H 0.09 -0.56 8.14 -2.38 -0.02 -0.58 16 38 H 0.41 -3.63 7.52 -92.70 -0.70 -4.32 16 39 H 0.16 0.95 7.01 -2.91 -0.02 0.93 16 40 H 0.09 -0.40 7.70 -2.39 -0.02 -0.42 16 41 H 0.40 -3.33 8.74 -74.06 -0.65 -3.98 16 42 H -0.28 0.14 7.11 99.48 0.71 0.85 16 43 H -0.27 0.01 7.07 99.48 0.70 0.72 16 44 H 0.18 -0.76 7.53 -2.91 -0.02 -0.79 16 45 H 0.20 -1.26 8.06 -2.91 -0.02 -1.28 16 46 H 0.24 -2.31 7.46 -2.91 -0.02 -2.33 16 47 H 0.10 -1.07 8.14 -2.39 -0.02 -1.09 16 48 H 0.08 -0.48 8.14 -2.39 -0.02 -0.50 16 49 H 0.08 -0.09 8.10 -2.39 -0.02 -0.11 16 50 H 0.06 0.14 8.10 -2.39 -0.02 0.12 16 Total: 0.00 -27.96 415.06 1.66 -26.29 By element: Atomic # 1 Polarization: -13.98 SS G_CDS: -0.33 Total: -14.31 kcal Atomic # 6 Polarization: 6.77 SS G_CDS: 5.64 Total: 12.41 kcal Atomic # 7 Polarization: -1.93 SS G_CDS: -3.70 Total: -5.63 kcal Atomic # 8 Polarization: -15.36 SS G_CDS: -2.14 Total: -17.51 kcal Atomic # 14 Polarization: -3.45 SS G_CDS: 2.19 Total: -1.26 kcal Total: -27.96 1.66 -26.29 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14589458_11618758.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.476 kcal (2) G-P(sol) polarization free energy of solvation -27.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -26.293 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds