Wall clock time and date at job start Sun Mar 7 2021 02:27:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.45198 * 109.46875 * 2 1 4 4 C 1.34227 * 116.99620 * 179.97438 * 3 2 1 5 5 O 1.20827 * 120.00403 * 359.97438 * 4 3 2 6 6 C 1.50703 * 119.99781 * 179.97438 * 4 3 2 7 7 H 1.09001 * 109.47257 * 60.00167 * 6 4 3 8 8 C 1.53005 * 109.47034 * 180.02562 * 6 4 3 9 9 C 1.53004 * 109.47126 * 179.97438 * 8 6 4 10 10 C 1.52990 * 109.47156 * 300.00079 * 9 8 6 11 11 H 1.09001 * 109.47165 * 299.99976 * 10 9 8 12 12 N 1.46497 * 109.47323 * 179.97438 * 10 9 8 13 13 C 1.34779 * 120.00279 * 154.99656 * 12 10 9 14 14 O 1.21697 * 120.00018 * 0.02562 * 13 12 10 15 15 C 1.46677 * 120.00074 * 180.02562 * 13 12 10 16 16 C 1.37868 * 126.23349 * 179.71610 * 15 13 12 17 17 C 1.50709 * 126.45824 * 359.96522 * 16 15 13 18 18 C 1.39834 * 107.08609 * 179.85054 * 16 15 13 19 19 C 1.50701 * 126.06798 * 180.13996 * 18 16 15 20 20 O 1.42900 * 109.47208 * 23.35744 * 19 18 16 21 21 Si 1.86299 * 109.47104 * 143.35858 * 19 18 16 22 22 C 1.35448 * 107.86694 * 0.41784 * 18 16 15 23 23 C 1.50702 * 125.57002 * 179.70629 * 22 18 16 24 24 N 1.35534 * 108.86934 * 359.74137 * 22 18 16 25 25 C 1.53005 * 109.47168 * 59.99946 * 10 9 8 26 26 C 1.53002 * 109.47211 * 299.99521 * 25 10 9 27 27 H 1.08995 * 109.47104 * 60.00360 * 1 2 3 28 28 H 1.09004 * 109.46974 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47106 * 299.99912 * 1 2 3 30 30 H 1.08993 * 109.46637 * 239.99684 * 2 1 3 31 31 H 1.09005 * 109.46870 * 120.00132 * 2 1 3 32 32 H 1.08997 * 109.46910 * 299.99856 * 8 6 4 33 33 H 1.09001 * 109.47053 * 59.99931 * 8 6 4 34 34 H 1.08999 * 109.46577 * 59.99939 * 9 8 6 35 35 H 1.08994 * 109.46823 * 179.97438 * 9 8 6 36 36 H 0.97007 * 120.00106 * 335.00309 * 12 10 9 37 37 H 1.08999 * 109.46803 * 90.02287 * 17 16 15 38 38 H 1.08995 * 109.46877 * 210.02786 * 17 16 15 39 39 H 1.09001 * 109.46735 * 330.02392 * 17 16 15 40 40 H 1.09003 * 109.46989 * 263.35634 * 19 18 16 41 41 H 0.96696 * 114.00216 * 60.00207 * 20 19 18 42 42 H 1.48502 * 109.99796 * 179.97438 * 21 19 18 43 43 H 1.48500 * 110.00082 * 301.31649 * 21 19 18 44 44 H 1.08998 * 109.46856 * 275.96639 * 23 22 18 45 45 H 1.09000 * 109.46487 * 35.96130 * 23 22 18 46 46 H 1.08999 * 109.47404 * 155.96176 * 23 22 18 47 47 H 0.97003 * 125.68244 * 179.97438 * 24 22 18 48 48 H 1.08991 * 109.47325 * 60.00455 * 25 10 9 49 49 H 1.09007 * 109.47085 * 179.97438 * 25 10 9 50 50 H 1.08999 * 109.47155 * 300.00890 * 26 25 10 51 51 H 1.08992 * 109.47024 * 179.97438 * 26 25 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3446 1.5448 0.0005 5 8 4.0807 0.5866 0.0015 6 6 3.9206 2.9374 0.0000 7 1 3.5843 3.4701 0.8895 8 6 5.4486 2.8573 0.0001 9 6 6.0334 4.2712 -0.0011 10 6 5.5619 5.0170 -1.2509 11 1 5.8979 4.4841 -2.1404 12 7 6.1214 6.3710 -1.2518 13 6 6.2850 7.0318 -2.4150 14 8 5.9677 6.5039 -3.4646 15 6 6.8457 8.3872 -2.4159 16 6 7.0728 9.1744 -3.5247 17 6 6.7929 8.8040 -4.9585 18 6 7.6093 10.3823 -3.0681 19 6 8.0132 11.5541 -3.9253 20 8 7.3028 11.5052 -5.1642 21 14 7.6070 13.1414 -3.0387 22 6 7.7073 10.3099 -1.7191 23 6 8.2420 11.3943 -0.8195 24 7 7.2466 9.1026 -1.3103 25 6 4.0340 5.0971 -1.2510 26 6 3.4491 3.6833 -1.2500 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8932 -0.5139 -0.8899 31 1 1.8933 -0.5139 0.8900 32 1 5.7844 2.3256 0.8904 33 1 5.7846 2.3248 -0.8896 34 1 5.6974 4.8040 0.8884 35 1 7.1218 4.2141 -0.0005 36 1 6.3741 6.7919 -0.4151 37 1 5.7789 9.1062 -5.2204 38 1 7.5034 9.3122 -5.6103 39 1 6.8939 7.7257 -5.0815 40 1 9.0850 11.5102 -4.1190 41 1 6.3413 11.5403 -5.0679 42 1 8.0011 14.3046 -3.8735 43 1 6.1534 13.1990 -2.7404 44 1 9.3292 11.3279 -0.7771 45 1 7.9527 12.3686 -1.2135 46 1 7.8311 11.2709 0.1824 47 1 7.2063 8.7939 -0.3916 48 1 3.6980 5.6300 -0.3616 49 1 3.6981 5.6289 -2.1413 50 1 3.7852 3.1504 -2.1394 51 1 2.3607 3.7403 -1.2496 There are 66 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 66 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14589458_12297754.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 02:27:26 Heat of formation + Delta-G solvation = -128.831408 kcal Electronic energy + Delta-G solvation = -31538.861761 eV Core-core repulsion = 27211.679630 eV Total energy + Delta-G solvation = -4327.182132 eV No. of doubly occupied orbitals = 66 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 351.192 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.67239 -41.87038 -40.66701 -38.99587 -37.89397 -37.70244 -35.50489 -33.64478 -33.20324 -32.70981 -31.87315 -30.97830 -29.29754 -27.46860 -26.43615 -25.26405 -23.88919 -23.71730 -22.49617 -21.85328 -21.15104 -20.67241 -20.29691 -19.28311 -18.75270 -17.86411 -17.68836 -17.59155 -17.12399 -16.72655 -16.52133 -16.08545 -15.85703 -15.50125 -15.33847 -15.01036 -14.92360 -14.79496 -14.55683 -14.35398 -14.23386 -14.12886 -13.82231 -13.76453 -13.65371 -13.50462 -13.30884 -13.24868 -13.08293 -12.96971 -12.79993 -12.57613 -12.52672 -12.42285 -12.37777 -12.22894 -11.87294 -11.65690 -11.56525 -11.49690 -11.39409 -11.11662 -10.61038 -10.21732 -9.48487 -8.97208 -4.74287 0.37129 1.06885 1.22522 1.60272 1.64990 1.70002 1.94599 2.07719 2.15287 2.28565 3.42138 3.43604 3.51775 3.60017 3.83679 3.84250 3.89220 3.94669 3.98053 4.00950 4.04465 4.13759 4.21409 4.25946 4.29360 4.30320 4.39226 4.47101 4.57032 4.63381 4.65332 4.72580 4.80191 4.82004 4.84760 4.86405 4.87566 4.92583 5.00539 5.05355 5.06574 5.12342 5.12505 5.19610 5.22408 5.26338 5.33023 5.40278 5.44896 5.70454 5.84065 6.41121 6.52885 6.61238 6.63084 7.12525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.053 3.947 3 O -0.360 6.360 4 C 0.463 3.537 5 O -0.541 6.541 6 C -0.074 4.074 7 H 0.139 0.861 8 C -0.099 4.099 9 C -0.112 4.112 10 C 0.144 3.856 11 H 0.064 0.936 12 N -0.711 5.711 13 C 0.588 3.412 14 O -0.567 6.567 15 C -0.078 4.078 16 C -0.075 4.075 17 C -0.084 4.084 18 C -0.231 4.231 19 C -0.046 4.046 20 O -0.550 6.550 21 Si 0.741 3.259 22 C 0.083 3.917 23 C -0.086 4.086 24 N -0.515 5.515 25 C -0.119 4.119 26 C -0.103 4.103 27 H 0.067 0.933 28 H 0.095 0.905 29 H 0.070 0.930 30 H 0.064 0.936 31 H 0.069 0.931 32 H 0.081 0.919 33 H 0.056 0.944 34 H 0.101 0.899 35 H 0.084 0.916 36 H 0.411 0.589 37 H 0.060 0.940 38 H 0.071 0.929 39 H 0.054 0.946 40 H 0.117 0.883 41 H 0.379 0.621 42 H -0.303 1.303 43 H -0.297 1.297 44 H 0.121 0.879 45 H 0.090 0.910 46 H 0.111 0.889 47 H 0.435 0.565 48 H 0.091 0.909 49 H 0.053 0.947 50 H 0.055 0.945 51 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.346 3.654 10.952 11.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.020 4.020 3 O -0.277 6.277 4 C 0.307 3.693 5 O -0.431 6.431 6 C -0.092 4.092 7 H 0.157 0.843 8 C -0.137 4.137 9 C -0.150 4.150 10 C 0.040 3.960 11 H 0.082 0.918 12 N -0.363 5.363 13 C 0.377 3.623 14 O -0.446 6.446 15 C -0.190 4.190 16 C -0.084 4.084 17 C -0.141 4.141 18 C -0.237 4.237 19 C -0.155 4.155 20 O -0.357 6.357 21 Si 0.647 3.353 22 C -0.037 4.037 23 C -0.141 4.141 24 N -0.114 5.114 25 C -0.158 4.158 26 C -0.141 4.141 27 H 0.086 0.914 28 H 0.114 0.886 29 H 0.089 0.911 30 H 0.082 0.918 31 H 0.087 0.913 32 H 0.100 0.900 33 H 0.075 0.925 34 H 0.120 0.880 35 H 0.102 0.898 36 H 0.248 0.752 37 H 0.079 0.921 38 H 0.090 0.910 39 H 0.073 0.927 40 H 0.135 0.865 41 H 0.228 0.772 42 H -0.232 1.232 43 H -0.224 1.224 44 H 0.139 0.861 45 H 0.107 0.893 46 H 0.129 0.871 47 H 0.276 0.724 48 H 0.110 0.890 49 H 0.072 0.928 50 H 0.074 0.926 51 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 0.425 3.504 10.134 10.732 hybrid contribution -1.009 -1.041 -0.750 1.632 sum -0.584 2.463 9.384 9.720 Atomic orbital electron populations 1.21823 0.90676 1.04250 1.03750 1.23238 0.96938 0.79455 1.02383 1.86515 1.24348 1.33358 1.83465 1.24357 0.80536 0.93385 0.70987 1.90672 1.61125 1.44512 1.46763 1.21261 0.96604 0.88210 1.03149 0.84336 1.21363 0.91493 0.97311 1.03562 1.21737 1.01768 0.94318 0.97185 1.21028 0.93305 0.81847 0.99818 0.91759 1.45737 1.65059 1.17048 1.08408 1.17197 0.77290 0.83717 0.84072 1.90828 1.52530 1.68526 1.32752 1.19911 1.16405 0.94806 0.87910 1.19914 1.00522 0.93266 0.94665 1.20271 1.01289 1.01070 0.91480 1.19691 1.12492 0.97602 0.93914 1.24532 0.99701 1.03686 0.87568 1.86516 1.23541 1.95747 1.29868 0.94410 0.81810 0.72793 0.86311 1.20671 1.00815 0.88505 0.93726 1.20789 1.04199 0.91098 0.97986 1.41672 1.48476 1.12561 1.08680 1.21835 0.94455 0.96232 1.03242 1.21425 1.01953 0.95208 0.95509 0.91389 0.88614 0.91054 0.91759 0.91270 0.90039 0.92479 0.88037 0.89781 0.75210 0.92095 0.90995 0.92702 0.86509 0.77216 1.23177 1.22448 0.86101 0.89285 0.87085 0.72366 0.88999 0.92784 0.92605 0.89519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.46 10.29 71.98 0.74 1.20 16 2 C 0.05 0.09 6.19 71.98 0.45 0.53 16 3 O -0.36 -1.33 10.12 -51.39 -0.52 -1.85 16 4 C 0.46 2.09 7.25 71.24 0.52 2.60 16 5 O -0.54 -6.01 15.73 21.96 0.35 -5.66 16 6 C -0.07 0.19 2.63 -11.54 -0.03 0.16 16 7 H 0.14 -1.09 8.14 -2.39 -0.02 -1.10 16 8 C -0.10 0.27 4.49 30.60 0.14 0.41 16 9 C -0.11 0.83 5.39 30.59 0.16 0.99 16 10 C 0.14 -0.33 2.45 44.99 0.11 -0.22 16 11 H 0.06 0.28 7.58 -2.39 -0.02 0.26 16 12 N -0.71 2.42 5.07 -446.51 -2.26 0.16 16 13 C 0.59 3.07 7.75 86.45 0.67 3.74 16 14 O -0.57 -8.07 14.47 -4.34 -0.06 -8.13 16 15 C -0.08 -0.24 7.06 40.35 0.28 0.05 16 16 C -0.07 -0.50 6.16 -19.56 -0.12 -0.62 16 17 C -0.08 -0.79 8.61 71.24 0.61 -0.18 16 18 C -0.23 -0.38 5.30 -20.12 -0.11 -0.49 16 19 C -0.05 -0.06 3.05 71.24 0.22 0.15 16 20 O -0.55 -3.21 10.29 -148.98 -1.53 -4.74 16 21 Si 0.74 -1.08 27.80 68.60 1.91 0.83 16 22 C 0.08 -0.43 6.80 41.34 0.28 -0.15 16 23 C -0.09 1.22 9.46 71.24 0.67 1.89 16 24 N -0.52 3.11 5.99 -171.93 -1.03 2.08 16 25 C -0.12 0.31 5.49 30.60 0.17 0.47 16 26 C -0.10 0.18 5.13 30.60 0.16 0.34 16 27 H 0.07 -0.19 8.14 -2.39 -0.02 -0.21 16 28 H 0.10 -0.57 8.14 -2.38 -0.02 -0.59 16 29 H 0.07 -0.25 8.14 -2.39 -0.02 -0.27 16 30 H 0.06 0.17 8.13 -2.39 -0.02 0.15 16 31 H 0.07 0.12 8.13 -2.38 -0.02 0.10 16 32 H 0.08 -0.19 8.10 -2.39 -0.02 -0.21 16 33 H 0.06 0.10 8.10 -2.39 -0.02 0.08 16 34 H 0.10 -1.26 8.14 -2.39 -0.02 -1.28 16 35 H 0.08 -0.64 8.14 -2.39 -0.02 -0.66 16 36 H 0.41 -4.56 7.73 -92.70 -0.72 -5.28 16 37 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 38 H 0.07 0.69 6.80 -2.39 -0.02 0.68 16 39 H 0.05 0.73 6.49 -2.39 -0.02 0.72 16 40 H 0.12 -0.01 7.96 -2.39 -0.02 -0.03 16 41 H 0.38 0.75 8.58 -74.06 -0.64 0.12 16 42 H -0.30 -2.04 7.11 99.48 0.71 -1.33 16 43 H -0.30 -1.32 7.11 99.48 0.71 -0.61 16 44 H 0.12 -2.14 8.14 -2.39 -0.02 -2.16 16 45 H 0.09 -1.21 2.78 -2.39 -0.01 -1.22 16 46 H 0.11 -2.10 8.14 -2.39 -0.02 -2.12 16 47 H 0.43 -6.20 8.19 -92.71 -0.76 -6.96 16 48 H 0.09 -0.63 8.14 -2.39 -0.02 -0.65 16 49 H 0.05 0.16 8.14 -2.38 -0.02 0.14 16 50 H 0.06 0.10 8.14 -2.39 -0.02 0.08 16 51 H 0.09 -0.20 8.11 -2.39 -0.02 -0.22 16 Total: 0.00 -29.17 401.59 0.66 -28.51 By element: Atomic # 1 Polarization: -20.97 SS G_CDS: -1.10 Total: -22.07 kcal Atomic # 6 Polarization: 5.96 SS G_CDS: 4.92 Total: 10.88 kcal Atomic # 7 Polarization: 5.53 SS G_CDS: -3.30 Total: 2.24 kcal Atomic # 8 Polarization: -18.62 SS G_CDS: -1.77 Total: -20.39 kcal Atomic # 14 Polarization: -1.08 SS G_CDS: 1.91 Total: 0.83 kcal Total: -29.17 0.66 -28.51 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14589458_12297754.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.320 kcal (2) G-P(sol) polarization free energy of solvation -29.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.494 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -28.511 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds