Wall clock time and date at job start Sun Mar 7 2021 02:27:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.45199 * 109.47112 * 2 1 4 4 C 1.34227 * 117.00244 * 179.97438 * 3 2 1 5 5 O 1.20822 * 119.99868 * 0.02562 * 4 3 2 6 6 C 1.50700 * 119.99990 * 179.97438 * 4 3 2 7 7 H 1.08992 * 109.47552 * 300.01021 * 6 4 3 8 8 C 1.53003 * 109.46677 * 60.00752 * 6 4 3 9 9 C 1.53003 * 109.47058 * 179.97438 * 8 6 4 10 10 C 1.52999 * 109.47334 * 300.00313 * 9 8 6 11 11 H 1.09004 * 109.46722 * 299.99790 * 10 9 8 12 12 N 1.46497 * 109.47500 * 179.97438 * 10 9 8 13 13 C 1.34770 * 120.00094 * 84.99601 * 12 10 9 14 14 O 1.21615 * 120.00243 * 0.02562 * 13 12 10 15 15 C 1.47312 * 120.00115 * 180.02562 * 13 12 10 16 16 C 1.40295 * 120.13515 * 179.97438 * 15 13 12 17 17 O 1.35654 * 120.11944 * 359.70387 * 16 15 13 18 18 C 1.42903 * 116.99911 * 179.97438 * 17 16 15 19 19 C 1.38441 * 119.75692 * 179.72709 * 16 15 13 20 20 C 1.38684 * 120.03472 * 0.02562 * 19 16 15 21 21 O 1.35714 * 119.86524 * 179.97438 * 20 19 16 22 22 C 1.42903 * 116.99675 * 0.02562 * 21 20 19 23 23 C 1.39183 * 120.27196 * 0.02562 * 20 19 16 24 24 C 1.50701 * 119.87970 * 179.97438 * 23 20 19 25 25 O 1.42901 * 109.47253 * 74.99864 * 24 23 20 26 26 Si 1.86305 * 109.47034 * 195.00019 * 24 23 20 27 27 C 1.37544 * 120.24428 * 359.95121 * 23 20 19 28 28 C 1.53001 * 109.47191 * 59.99462 * 10 9 8 29 29 C 1.52997 * 109.47094 * 180.02562 * 6 4 3 30 30 H 1.09007 * 109.47095 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47323 * 299.99645 * 1 2 3 32 32 H 1.08998 * 109.47086 * 59.99906 * 1 2 3 33 33 H 1.09000 * 109.47323 * 240.00355 * 2 1 3 34 34 H 1.08998 * 109.47086 * 120.00094 * 2 1 3 35 35 H 1.09001 * 109.47142 * 299.99434 * 8 6 4 36 36 H 1.08997 * 109.47323 * 60.00072 * 8 6 4 37 37 H 1.08997 * 109.47114 * 179.97438 * 9 8 6 38 38 H 1.09004 * 109.47045 * 59.99906 * 9 8 6 39 39 H 0.97005 * 120.00037 * 265.00251 * 12 10 9 40 40 H 1.08998 * 109.46735 * 300.00083 * 18 17 16 41 41 H 1.09003 * 109.46991 * 60.00255 * 18 17 16 42 42 H 1.08997 * 109.47359 * 179.97438 * 18 17 16 43 43 H 1.07998 * 119.97842 * 180.02562 * 19 16 15 44 44 H 1.09004 * 109.46810 * 179.97438 * 22 21 20 45 45 H 1.08998 * 109.47257 * 299.99704 * 22 21 20 46 46 H 1.09001 * 109.47118 * 60.00297 * 22 21 20 47 47 H 1.09002 * 109.47192 * 314.99804 * 24 23 20 48 48 H 0.96697 * 113.99978 * 179.97438 * 25 24 23 49 49 H 1.48503 * 109.99745 * 178.67887 * 26 24 23 50 50 H 1.48499 * 109.99892 * 299.99781 * 26 24 23 51 51 H 1.07995 * 120.02519 * 180.02562 * 27 23 20 52 52 H 1.09004 * 109.47019 * 60.00510 * 28 10 9 53 53 H 1.09005 * 109.47039 * 179.97438 * 28 10 9 54 54 H 1.09006 * 109.46843 * 60.00537 * 29 6 4 55 55 H 1.08992 * 109.47575 * 300.00787 * 29 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5449 0.0005 5 8 4.0807 0.5867 0.0005 6 6 3.9206 2.9375 0.0000 7 1 3.5850 3.4692 -0.8903 8 6 3.4485 3.6850 1.2487 9 6 4.0337 5.0987 1.2486 10 6 5.5616 5.0182 1.2494 11 1 5.8969 4.4863 2.1398 12 7 6.1220 6.3718 1.2487 13 6 6.2851 7.0343 2.4109 14 8 5.9675 6.5083 3.4605 15 6 6.8480 8.3956 2.4101 16 6 7.0185 9.0880 3.6183 17 8 6.6600 8.5086 4.7914 18 6 6.8631 9.2733 5.9814 19 6 7.5536 10.3648 3.6090 20 6 7.9186 10.9557 2.4086 21 8 8.4423 12.2077 2.4034 22 6 8.5888 12.8548 3.6690 23 6 7.7490 10.2704 1.2091 24 6 8.1481 10.9212 -0.0902 25 8 9.5721 10.9112 -0.2103 26 14 7.3983 9.9797 -1.5123 27 6 7.2190 9.0012 1.2052 28 6 6.0337 4.2706 0.0008 29 6 5.4485 2.8575 0.0001 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 1.8934 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 2.3600 3.7421 1.2482 36 1 3.7842 3.1534 2.1391 37 1 3.6971 5.6314 2.1379 38 1 3.6985 5.6306 0.3581 39 1 6.3756 6.7913 0.4116 40 1 7.9218 9.5114 6.0838 41 1 6.2870 10.1968 5.9226 42 1 6.5351 8.6952 6.8452 43 1 7.6868 10.9009 4.5370 44 1 9.0179 13.8461 3.5227 45 1 7.6126 12.9477 4.1448 46 1 9.2483 12.2642 4.3049 47 1 7.7893 11.9503 -0.1064 48 1 9.9009 11.3149 -1.0252 49 1 7.7582 10.6300 -2.7980 50 1 7.8797 8.5749 -1.5015 51 1 7.0893 8.4725 0.2725 52 1 5.6984 4.8026 -0.8897 53 1 7.1222 4.2137 0.0012 54 1 5.7845 2.3250 -0.8897 55 1 5.7845 2.3257 0.8902 There are 74 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 74 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14589458_12297780.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 02:27:31 Heat of formation + Delta-G solvation = -200.999466 kcal Electronic energy + Delta-G solvation = -38009.691455 eV Core-core repulsion = 32979.215268 eV Total energy + Delta-G solvation = -5030.476187 eV No. of doubly occupied orbitals = 74 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 394.196 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -42.10784 -41.79962 -40.74152 -39.98660 -38.94874 -38.36290 -37.64954 -37.13121 -35.29376 -32.80353 -32.37658 -32.08834 -31.80284 -30.45616 -28.96892 -28.14078 -26.09219 -25.70339 -24.47273 -23.81986 -23.57005 -22.69221 -21.83437 -21.45178 -20.78494 -19.98129 -18.77296 -18.57203 -18.52884 -18.22747 -17.64726 -17.56523 -17.34273 -17.07546 -16.73809 -16.53209 -16.39114 -16.02313 -15.76697 -15.64494 -15.45596 -15.30262 -15.09949 -14.87526 -14.53037 -14.37854 -14.19223 -14.01638 -13.87799 -13.80782 -13.65921 -13.46888 -13.41808 -13.21489 -12.92934 -12.78094 -12.73485 -12.53646 -12.50912 -12.49860 -12.34427 -12.15113 -12.11603 -11.86302 -11.62269 -11.58897 -11.50899 -11.42889 -11.29845 -10.86501 -10.38932 -10.07914 -9.90263 -9.17466 -4.88998 -0.23790 0.09013 1.11619 1.32570 1.62720 1.64654 1.75178 1.96373 2.11736 2.12781 2.19534 2.60830 3.35236 3.48691 3.52668 3.59709 3.65921 3.71001 3.76880 3.88688 3.94863 3.98954 4.04886 4.10308 4.12963 4.16901 4.22407 4.25006 4.28262 4.29196 4.30999 4.32318 4.34055 4.36709 4.46789 4.48646 4.63486 4.66692 4.67993 4.78489 4.78675 4.85216 4.89956 4.90570 4.99400 5.06576 5.06613 5.11937 5.14136 5.17593 5.29820 5.30892 5.33750 5.45472 5.55559 6.03986 6.29707 6.56703 6.66074 6.67680 7.28416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.053 3.947 3 O -0.359 6.359 4 C 0.464 3.536 5 O -0.542 6.542 6 C -0.074 4.074 7 H 0.141 0.859 8 C -0.102 4.102 9 C -0.119 4.119 10 C 0.144 3.856 11 H 0.063 0.937 12 N -0.715 5.715 13 C 0.565 3.435 14 O -0.562 6.562 15 C -0.227 4.227 16 C 0.217 3.783 17 O -0.303 6.303 18 C 0.010 3.990 19 C -0.311 4.311 20 C 0.213 3.787 21 O -0.312 6.312 22 C 0.012 3.988 23 C -0.162 4.162 24 C -0.077 4.077 25 O -0.557 6.557 26 Si 0.760 3.240 27 C 0.001 3.999 28 C -0.117 4.117 29 C -0.098 4.098 30 H 0.095 0.905 31 H 0.068 0.932 32 H 0.071 0.929 33 H 0.068 0.932 34 H 0.064 0.936 35 H 0.089 0.911 36 H 0.054 0.946 37 H 0.057 0.943 38 H 0.096 0.904 39 H 0.410 0.590 40 H 0.068 0.932 41 H 0.074 0.926 42 H 0.113 0.887 43 H 0.164 0.836 44 H 0.121 0.879 45 H 0.073 0.927 46 H 0.064 0.936 47 H 0.082 0.918 48 H 0.392 0.608 49 H -0.285 1.285 50 H -0.268 1.268 51 H 0.161 0.839 52 H 0.102 0.898 53 H 0.079 0.921 54 H 0.079 0.921 55 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.281 6.853 -2.991 8.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.020 4.020 3 O -0.276 6.276 4 C 0.308 3.692 5 O -0.432 6.432 6 C -0.093 4.093 7 H 0.158 0.842 8 C -0.140 4.140 9 C -0.158 4.158 10 C 0.039 3.961 11 H 0.081 0.919 12 N -0.368 5.368 13 C 0.354 3.646 14 O -0.442 6.442 15 C -0.232 4.232 16 C 0.168 3.832 17 O -0.214 6.214 18 C -0.084 4.084 19 C -0.331 4.331 20 C 0.165 3.835 21 O -0.223 6.223 22 C -0.082 4.082 23 C -0.163 4.163 24 C -0.184 4.184 25 O -0.366 6.366 26 Si 0.663 3.337 27 C -0.017 4.017 28 C -0.155 4.155 29 C -0.136 4.136 30 H 0.113 0.887 31 H 0.087 0.913 32 H 0.090 0.910 33 H 0.086 0.914 34 H 0.082 0.918 35 H 0.107 0.893 36 H 0.073 0.927 37 H 0.075 0.925 38 H 0.114 0.886 39 H 0.248 0.752 40 H 0.087 0.913 41 H 0.092 0.908 42 H 0.131 0.869 43 H 0.181 0.819 44 H 0.139 0.861 45 H 0.091 0.909 46 H 0.082 0.918 47 H 0.100 0.900 48 H 0.242 0.758 49 H -0.211 1.211 50 H -0.195 1.195 51 H 0.178 0.822 52 H 0.120 0.880 53 H 0.097 0.903 54 H 0.098 0.902 55 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -3.235 5.361 -2.478 6.734 hybrid contribution 1.597 0.553 0.283 1.713 sum -1.638 5.914 -2.194 6.517 Atomic orbital electron populations 1.21820 0.90629 1.04216 1.03796 1.23234 0.96966 0.79509 1.02321 1.86515 1.24297 1.33286 1.83468 1.24358 0.80530 0.93361 0.70924 1.90667 1.61164 1.44544 1.46840 1.21262 0.96377 0.88231 1.03395 0.84160 1.21427 1.02024 0.95215 0.95318 1.21847 0.94058 0.96235 1.03631 1.21025 0.93663 0.81884 0.99499 0.91887 1.45839 1.65203 1.17015 1.08748 1.18003 0.77536 0.85180 0.83877 1.90816 1.51731 1.69189 1.32425 1.19151 1.15413 0.96617 0.91978 1.18971 0.88365 0.89936 0.85939 1.86364 1.77791 1.43699 1.13550 1.23471 1.02493 0.97674 0.84775 1.21409 1.14638 0.97337 0.99679 1.18917 0.87664 0.84144 0.92777 1.86110 1.76207 1.25485 1.34548 1.23474 1.02861 0.98652 0.83241 1.18608 1.09046 0.95567 0.93125 1.24902 0.85183 1.05875 1.02467 1.86568 1.20029 1.83925 1.46113 0.94365 0.89374 0.76987 0.73013 1.20962 0.91741 0.92168 0.96846 1.21770 1.01588 0.94559 0.97570 1.21335 0.91732 0.97107 1.03428 0.88668 0.91321 0.91028 0.91360 0.91803 0.89261 0.92734 0.92467 0.88551 0.75246 0.91333 0.90753 0.86908 0.81870 0.86081 0.90856 0.91775 0.89958 0.75827 1.21135 1.19457 0.82231 0.87958 0.90256 0.90192 0.92543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.42 10.29 71.98 0.74 1.16 16 2 C 0.05 0.11 6.19 71.98 0.45 0.56 16 3 O -0.36 -1.52 10.12 -51.39 -0.52 -2.04 16 4 C 0.46 2.51 7.25 71.24 0.52 3.02 16 5 O -0.54 -6.57 15.73 21.98 0.35 -6.23 16 6 C -0.07 0.10 2.63 -11.54 -0.03 0.07 16 7 H 0.14 -0.95 8.14 -2.39 -0.02 -0.97 16 8 C -0.10 0.09 5.14 30.60 0.16 0.24 16 9 C -0.12 0.14 5.49 30.59 0.17 0.31 16 10 C 0.14 0.08 2.45 44.99 0.11 0.19 16 11 H 0.06 0.43 7.58 -2.39 -0.02 0.42 16 12 N -0.72 -0.66 5.03 -445.92 -2.24 -2.90 16 13 C 0.57 4.87 7.72 86.63 0.67 5.54 16 14 O -0.56 -9.53 14.81 16.89 0.25 -9.28 16 15 C -0.23 -1.46 5.89 -20.00 -0.12 -1.58 16 16 C 0.22 1.57 6.69 22.82 0.15 1.72 16 17 O -0.30 -2.78 8.56 -68.73 -0.59 -3.37 16 18 C 0.01 -0.01 9.81 113.37 1.11 1.11 16 19 C -0.31 -0.87 8.01 22.42 0.18 -0.69 16 20 C 0.21 0.80 6.67 22.60 0.15 0.95 16 21 O -0.31 -0.76 9.80 -90.35 -0.89 -1.65 16 22 C 0.01 -0.06 9.80 113.37 1.11 1.05 16 23 C -0.16 -0.45 5.30 -19.80 -0.11 -0.55 16 24 C -0.08 0.03 2.36 71.24 0.17 0.20 16 25 O -0.56 -1.48 12.86 -148.98 -1.92 -3.40 16 26 Si 0.76 -3.76 30.19 68.60 2.07 -1.69 16 27 C 0.00 0.00 8.14 22.50 0.18 0.18 16 28 C -0.12 0.49 5.39 30.58 0.16 0.65 16 29 C -0.10 0.07 4.49 30.58 0.14 0.20 16 30 H 0.09 -0.54 8.14 -2.38 -0.02 -0.55 16 31 H 0.07 -0.18 8.14 -2.39 -0.02 -0.20 16 32 H 0.07 -0.24 8.14 -2.39 -0.02 -0.25 16 33 H 0.07 0.16 8.13 -2.39 -0.02 0.14 16 34 H 0.06 0.20 8.13 -2.39 -0.02 0.18 16 35 H 0.09 -0.18 8.11 -2.39 -0.02 -0.20 16 36 H 0.05 0.15 8.14 -2.39 -0.02 0.13 16 37 H 0.06 0.22 8.14 -2.39 -0.02 0.20 16 38 H 0.10 -0.58 8.14 -2.39 -0.02 -0.60 16 39 H 0.41 -2.13 6.62 -92.70 -0.61 -2.74 16 40 H 0.07 -0.23 7.66 -2.39 -0.02 -0.24 16 41 H 0.07 -0.32 7.66 -2.39 -0.02 -0.34 16 42 H 0.11 -0.27 8.14 -2.39 -0.02 -0.29 16 43 H 0.16 -0.41 4.50 -2.91 -0.01 -0.42 16 44 H 0.12 -1.01 8.14 -2.38 -0.02 -1.02 16 45 H 0.07 -0.56 7.65 -2.39 -0.02 -0.58 16 46 H 0.06 -0.38 7.65 -2.39 -0.02 -0.40 16 47 H 0.08 -0.17 7.82 -2.39 -0.02 -0.19 16 48 H 0.39 -2.07 8.74 -74.06 -0.65 -2.72 16 49 H -0.28 0.10 7.11 99.48 0.71 0.81 16 50 H -0.27 0.57 6.74 99.48 0.67 1.24 16 51 H 0.16 -0.67 3.20 -2.91 -0.01 -0.68 16 52 H 0.10 -0.96 8.14 -2.39 -0.02 -0.98 16 53 H 0.08 -0.30 8.14 -2.38 -0.02 -0.32 16 54 H 0.08 -0.03 8.10 -2.38 -0.02 -0.05 16 55 H 0.06 0.21 8.10 -2.39 -0.02 0.19 16 Total: 0.00 -28.77 439.88 2.10 -26.66 By element: Atomic # 1 Polarization: -10.12 SS G_CDS: -0.33 Total: -10.44 kcal Atomic # 6 Polarization: 8.42 SS G_CDS: 5.91 Total: 14.34 kcal Atomic # 7 Polarization: -0.66 SS G_CDS: -2.24 Total: -2.90 kcal Atomic # 8 Polarization: -22.65 SS G_CDS: -3.31 Total: -25.97 kcal Atomic # 14 Polarization: -3.76 SS G_CDS: 2.07 Total: -1.69 kcal Total: -28.77 2.10 -26.66 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14589458_12297780.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -174.338 kcal (2) G-P(sol) polarization free energy of solvation -28.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -203.104 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -26.661 kcal (6) G-S(sol) free energy of system = (1) + (5) -200.999 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds