Wall clock time and date at job start Sun Mar 7 2021 02:27:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.45202 * 109.47045 * 2 1 4 4 C 1.34229 * 116.99923 * 180.02562 * 3 2 1 5 5 O 1.20827 * 119.99860 * 359.97438 * 4 3 2 6 6 C 1.50699 * 119.99898 * 179.97438 * 4 3 2 7 7 H 1.08998 * 109.47303 * 299.99798 * 6 4 3 8 8 C 1.53004 * 109.47143 * 60.00005 * 6 4 3 9 9 C 1.52995 * 109.47178 * 180.02562 * 8 6 4 10 10 C 1.52999 * 109.47262 * 299.99708 * 9 8 6 11 11 H 1.09012 * 109.47040 * 300.00460 * 10 9 8 12 12 N 1.46492 * 109.47381 * 180.02562 * 10 9 8 13 13 C 1.34774 * 120.00345 * 85.00295 * 12 10 9 14 14 O 1.21286 * 119.99717 * 359.97438 * 13 12 10 15 15 C 1.50701 * 120.00373 * 180.02562 * 13 12 10 16 16 C 1.50701 * 109.47148 * 179.97438 * 15 13 12 17 17 C 1.38235 * 119.99808 * 89.99755 * 16 15 13 18 18 C 1.38243 * 119.99602 * 179.97438 * 17 16 15 19 19 C 1.38231 * 120.00070 * 0.07188 * 18 17 16 20 20 C 1.50701 * 119.99866 * 179.97438 * 19 18 17 21 21 O 1.42894 * 109.47162 * 119.93189 * 20 19 18 22 22 Si 1.86299 * 109.47216 * 359.93450 * 20 19 18 23 23 C 1.38234 * 119.99892 * 359.90902 * 19 18 17 24 24 C 1.38230 * 119.99865 * 269.97500 * 16 15 13 25 25 C 1.53003 * 109.47130 * 59.99901 * 10 9 8 26 26 C 1.52996 * 109.47157 * 300.00570 * 25 10 9 27 27 H 1.08995 * 109.47058 * 60.00324 * 1 2 3 28 28 H 1.08994 * 109.46939 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47042 * 300.00301 * 1 2 3 30 30 H 1.08998 * 109.47042 * 239.99699 * 2 1 3 31 31 H 1.08995 * 109.47058 * 119.99676 * 2 1 3 32 32 H 1.09003 * 109.46837 * 300.00288 * 8 6 4 33 33 H 1.08998 * 109.47190 * 59.99724 * 8 6 4 34 34 H 1.09001 * 109.47284 * 180.02562 * 9 8 6 35 35 H 1.08998 * 109.47288 * 59.99781 * 9 8 6 36 36 H 0.97000 * 119.99885 * 264.99901 * 12 10 9 37 37 H 1.08993 * 109.47576 * 59.99137 * 15 13 12 38 38 H 1.09001 * 109.46592 * 299.99075 * 15 13 12 39 39 H 1.08000 * 120.00616 * 359.70324 * 17 16 15 40 40 H 1.08001 * 119.99556 * 179.97438 * 18 17 16 41 41 H 1.08998 * 109.47497 * 239.93236 * 20 19 18 42 42 H 0.96701 * 114.00640 * 179.97438 * 21 20 19 43 43 H 1.48511 * 109.99911 * 298.68030 * 22 20 19 44 44 H 1.48502 * 110.00314 * 59.99893 * 22 20 19 45 45 H 1.07999 * 119.99751 * 180.02562 * 23 19 18 46 46 H 1.08001 * 120.00371 * 0.02562 * 24 16 15 47 47 H 1.08998 * 109.46895 * 60.00248 * 25 10 9 48 48 H 1.08999 * 109.47257 * 180.02562 * 25 10 9 49 49 H 1.09000 * 109.47243 * 179.97438 * 26 25 10 50 50 H 1.09012 * 109.47135 * 299.99517 * 26 25 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5449 -0.0005 5 8 4.0807 0.5866 -0.0005 6 6 3.9207 2.9374 -0.0012 7 1 3.5845 3.4693 -0.8912 8 6 3.4496 3.6848 1.2481 9 6 4.0338 5.0988 1.2471 10 6 5.5617 5.0193 1.2463 11 1 5.8984 4.4876 2.1364 12 7 6.1212 6.3732 1.2461 13 6 6.2852 7.0349 2.4087 14 8 5.9691 6.5096 3.4552 15 6 6.8601 8.4279 2.4083 16 6 6.9378 8.9396 3.8237 17 6 8.0759 8.7193 4.5768 18 6 8.1473 9.1892 5.8749 19 6 7.0802 9.8781 6.4203 20 6 7.1579 10.3898 7.8357 21 8 7.0136 11.8114 7.8368 22 14 8.8071 9.9325 8.5717 23 6 5.9424 10.0987 5.6670 24 6 5.8713 9.6298 4.3686 25 6 6.0329 4.2720 -0.0028 26 6 5.4486 2.8580 -0.0019 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 2.3611 3.7417 1.2484 33 1 3.7858 3.1529 2.1381 34 1 3.6986 5.6310 2.1373 35 1 3.6972 5.6304 0.3571 36 1 6.3736 6.7935 0.4091 37 1 6.2203 9.0850 1.8194 38 1 7.8594 8.4083 1.9734 39 1 8.9075 8.1763 4.1526 40 1 9.0363 9.0166 6.4634 41 1 6.3593 9.9431 8.4280 42 1 7.0533 12.2102 8.7168 43 1 8.9562 8.4553 8.6055 44 1 9.9045 10.5356 7.7733 45 1 5.1088 10.6373 6.0930 46 1 4.9821 9.8019 3.7803 47 1 5.6963 4.8036 -0.8928 48 1 7.1215 4.2150 -0.0032 49 1 5.7839 2.3257 -0.8921 50 1 5.7853 2.3262 0.8882 There are 65 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 65 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14589458_12335836.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 02:27:40 Heat of formation + Delta-G solvation = -143.293411 kcal Electronic energy + Delta-G solvation = -30013.316099 eV Core-core repulsion = 25778.244237 eV Total energy + Delta-G solvation = -4235.071862 eV No. of doubly occupied orbitals = 65 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 348.182 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.91022 -41.27835 -40.36573 -39.05462 -37.74842 -37.57844 -35.33272 -34.23255 -32.78285 -32.09117 -31.86551 -31.26796 -29.48104 -26.10940 -25.13404 -23.98616 -23.86981 -23.67615 -22.33014 -21.80664 -21.41983 -20.78224 -18.79551 -18.40270 -18.19463 -17.82462 -17.67952 -17.59784 -17.13585 -16.91506 -16.36409 -16.08656 -15.68186 -15.32968 -15.18571 -15.06251 -14.94585 -14.75571 -14.53312 -14.46109 -14.18018 -13.89391 -13.84352 -13.61167 -13.52283 -13.31039 -13.07902 -12.98478 -12.92741 -12.76711 -12.55048 -12.41643 -12.35085 -12.22303 -12.08265 -11.88707 -11.65152 -11.56606 -11.48735 -11.36780 -10.95396 -10.37248 -10.07991 -10.02201 -9.67948 -4.99919 0.11344 0.30377 1.05781 1.26424 1.59273 1.59787 1.62420 1.93024 2.12005 2.66197 3.38678 3.43225 3.52875 3.56769 3.60402 3.70364 3.81167 3.89008 3.94153 3.96799 3.99187 4.00961 4.05968 4.15474 4.24482 4.27304 4.29188 4.31242 4.32882 4.39903 4.44884 4.54465 4.60019 4.61785 4.72978 4.80195 4.86002 4.88927 4.92819 4.95611 5.01104 5.05497 5.07071 5.12250 5.22273 5.23481 5.28241 5.40498 5.40656 5.45761 5.51605 5.88652 6.56684 6.62016 6.87963 7.27754 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.053 3.947 3 O -0.360 6.360 4 C 0.463 3.537 5 O -0.542 6.542 6 C -0.074 4.074 7 H 0.139 0.861 8 C -0.103 4.103 9 C -0.118 4.118 10 C 0.142 3.858 11 H 0.058 0.942 12 N -0.713 5.713 13 C 0.513 3.487 14 O -0.580 6.580 15 C -0.097 4.097 16 C -0.071 4.071 17 C -0.112 4.112 18 C -0.147 4.147 19 C -0.097 4.097 20 C -0.079 4.079 21 O -0.562 6.562 22 Si 0.778 3.222 23 C -0.103 4.103 24 C -0.110 4.110 25 C -0.113 4.113 26 C -0.100 4.100 27 H 0.071 0.929 28 H 0.095 0.905 29 H 0.067 0.933 30 H 0.069 0.931 31 H 0.064 0.936 32 H 0.086 0.914 33 H 0.052 0.948 34 H 0.054 0.946 35 H 0.093 0.907 36 H 0.419 0.581 37 H 0.136 0.864 38 H 0.130 0.870 39 H 0.136 0.864 40 H 0.112 0.888 41 H 0.090 0.910 42 H 0.403 0.597 43 H -0.296 1.296 44 H -0.295 1.295 45 H 0.135 0.865 46 H 0.144 0.856 47 H 0.101 0.899 48 H 0.082 0.918 49 H 0.079 0.921 50 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.073 3.968 -3.217 5.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.020 4.020 3 O -0.277 6.277 4 C 0.307 3.693 5 O -0.431 6.431 6 C -0.092 4.092 7 H 0.157 0.843 8 C -0.141 4.141 9 C -0.157 4.157 10 C 0.037 3.963 11 H 0.076 0.924 12 N -0.365 5.365 13 C 0.301 3.699 14 O -0.460 6.460 15 C -0.137 4.137 16 C -0.071 4.071 17 C -0.130 4.130 18 C -0.165 4.165 19 C -0.097 4.097 20 C -0.189 4.189 21 O -0.372 6.372 22 Si 0.684 3.316 23 C -0.121 4.121 24 C -0.128 4.128 25 C -0.151 4.151 26 C -0.138 4.138 27 H 0.090 0.910 28 H 0.114 0.886 29 H 0.086 0.914 30 H 0.087 0.913 31 H 0.082 0.918 32 H 0.105 0.895 33 H 0.071 0.929 34 H 0.073 0.927 35 H 0.112 0.888 36 H 0.257 0.743 37 H 0.154 0.846 38 H 0.148 0.852 39 H 0.154 0.846 40 H 0.129 0.871 41 H 0.108 0.892 42 H 0.254 0.746 43 H -0.224 1.224 44 H -0.223 1.223 45 H 0.153 0.847 46 H 0.161 0.839 47 H 0.119 0.881 48 H 0.101 0.899 49 H 0.098 0.902 50 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -1.405 2.791 -3.233 4.497 hybrid contribution -0.094 -0.640 -0.387 0.754 sum -1.499 2.151 -3.620 4.470 Atomic orbital electron populations 1.21821 0.90610 1.04265 1.03775 1.23244 0.96985 0.79446 1.02363 1.86516 1.24309 1.33372 1.83459 1.24369 0.80549 0.93391 0.70963 1.90670 1.61153 1.44525 1.46801 1.21257 0.96565 0.88204 1.03203 0.84329 1.21428 1.01961 0.95403 0.95343 1.21829 0.94566 0.96036 1.03268 1.20965 0.93314 0.82722 0.99277 0.92380 1.45918 1.64658 1.16539 1.09388 1.20954 0.77363 0.88178 0.83419 1.90751 1.51887 1.70009 1.33305 1.20763 1.05772 0.92829 0.94292 1.19609 0.93790 0.97544 0.96169 1.21142 0.98931 0.99265 0.93687 1.20971 0.97671 1.01180 0.96652 1.19724 0.94854 0.99127 0.96044 1.24808 1.12746 0.85460 0.95854 1.86428 1.96661 1.17607 1.36465 0.94572 0.73359 0.77215 0.86421 1.21174 0.97723 0.98812 0.94353 1.21355 0.98577 0.97328 0.95500 1.21736 1.01667 0.94194 0.97455 1.21369 0.91577 0.97491 1.03363 0.91027 0.88597 0.91365 0.91291 0.91784 0.89511 0.92872 0.92737 0.88839 0.74282 0.84637 0.85203 0.84645 0.87075 0.89224 0.74561 1.22379 1.22298 0.84664 0.83858 0.88064 0.89926 0.90207 0.92669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.43 10.29 71.98 0.74 1.18 16 2 C 0.05 0.10 6.19 71.98 0.45 0.55 16 3 O -0.36 -1.49 10.12 -51.41 -0.52 -2.02 16 4 C 0.46 2.38 7.26 71.24 0.52 2.90 16 5 O -0.54 -6.39 15.73 21.96 0.35 -6.05 16 6 C -0.07 0.14 2.63 -11.54 -0.03 0.11 16 7 H 0.14 -0.98 8.14 -2.39 -0.02 -1.00 16 8 C -0.10 0.13 5.14 30.59 0.16 0.29 16 9 C -0.12 0.30 5.49 30.59 0.17 0.47 16 10 C 0.14 -0.30 2.45 44.99 0.11 -0.19 16 11 H 0.06 0.29 7.58 -2.38 -0.02 0.27 16 12 N -0.71 3.36 5.08 -442.53 -2.25 1.11 16 13 C 0.51 0.90 7.79 87.66 0.68 1.58 16 14 O -0.58 -7.38 15.70 -3.05 -0.05 -7.43 16 15 C -0.10 0.35 5.83 29.10 0.17 0.52 16 16 C -0.07 -0.31 4.37 -19.87 -0.09 -0.40 16 17 C -0.11 -0.80 9.70 22.27 0.22 -0.58 16 18 C -0.15 -1.43 8.67 22.27 0.19 -1.24 16 19 C -0.10 -0.86 5.42 -19.87 -0.11 -0.96 16 20 C -0.08 -0.24 2.81 71.24 0.20 -0.04 16 21 O -0.56 -1.13 12.74 -148.98 -1.90 -3.03 16 22 Si 0.78 1.02 29.79 68.60 2.04 3.06 16 23 C -0.10 -0.76 9.61 22.27 0.21 -0.54 16 24 C -0.11 -0.56 9.70 22.27 0.22 -0.35 16 25 C -0.11 0.73 5.39 30.59 0.16 0.90 16 26 C -0.10 0.18 4.49 30.59 0.14 0.31 16 27 H 0.07 -0.24 8.14 -2.39 -0.02 -0.26 16 28 H 0.10 -0.55 8.14 -2.39 -0.02 -0.57 16 29 H 0.07 -0.18 8.14 -2.39 -0.02 -0.20 16 30 H 0.07 0.14 8.13 -2.39 -0.02 0.12 16 31 H 0.06 0.19 8.13 -2.39 -0.02 0.17 16 32 H 0.09 -0.17 8.11 -2.39 -0.02 -0.19 16 33 H 0.05 0.14 8.14 -2.39 -0.02 0.12 16 34 H 0.05 0.14 8.14 -2.39 -0.02 0.12 16 35 H 0.09 -0.65 8.14 -2.39 -0.02 -0.67 16 36 H 0.42 -5.05 8.60 -92.71 -0.80 -5.84 16 37 H 0.14 -1.28 8.08 -2.39 -0.02 -1.30 16 38 H 0.13 -1.11 8.09 -2.39 -0.02 -1.13 16 39 H 0.14 0.44 8.06 -2.91 -0.02 0.41 16 40 H 0.11 1.02 4.88 -2.91 -0.01 1.01 16 41 H 0.09 -0.04 7.96 -2.39 -0.02 -0.06 16 42 H 0.40 -3.57 8.74 -74.06 -0.65 -4.22 16 43 H -0.30 -2.29 7.11 99.48 0.71 -1.58 16 44 H -0.30 -2.47 7.11 99.48 0.71 -1.76 16 45 H 0.14 0.63 8.06 -2.91 -0.02 0.60 16 46 H 0.14 0.03 8.06 -2.91 -0.02 0.00 16 47 H 0.10 -1.15 8.14 -2.39 -0.02 -1.17 16 48 H 0.08 -0.55 8.14 -2.39 -0.02 -0.57 16 49 H 0.08 -0.10 8.10 -2.39 -0.02 -0.12 16 50 H 0.05 0.15 8.10 -2.38 -0.02 0.13 16 Total: 0.00 -28.85 408.59 1.32 -27.53 By element: Atomic # 1 Polarization: -17.22 SS G_CDS: -0.46 Total: -17.69 kcal Atomic # 6 Polarization: 0.40 SS G_CDS: 4.11 Total: 4.50 kcal Atomic # 7 Polarization: 3.36 SS G_CDS: -2.25 Total: 1.11 kcal Atomic # 8 Polarization: -16.40 SS G_CDS: -2.12 Total: -18.52 kcal Atomic # 14 Polarization: 1.02 SS G_CDS: 2.04 Total: 3.06 kcal Total: -28.85 1.32 -27.53 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14589458_12335836.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -115.763 kcal (2) G-P(sol) polarization free energy of solvation -28.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -27.531 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.293 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds