Wall clock time and date at job start Sun Mar 7 2021 02:27:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.45197 * 109.46956 * 2 1 4 4 C 1.34227 * 117.00127 * 179.97438 * 3 2 1 5 5 O 1.20826 * 119.99674 * 0.02562 * 4 3 2 6 6 C 1.50699 * 120.00422 * 180.02562 * 4 3 2 7 7 H 1.08999 * 109.46887 * 300.00347 * 6 4 3 8 8 C 1.52995 * 109.46841 * 60.00242 * 6 4 3 9 9 C 1.53000 * 109.47058 * 180.02562 * 8 6 4 10 10 C 1.52998 * 109.47266 * 299.99682 * 9 8 6 11 11 H 1.08998 * 109.47289 * 300.00512 * 10 9 8 12 12 N 1.46495 * 109.47344 * 179.97438 * 10 9 8 13 13 C 1.34785 * 119.99884 * 85.00496 * 12 10 9 14 14 O 1.21593 * 119.99727 * 359.97438 * 13 12 10 15 15 C 1.47569 * 120.00083 * 180.02562 * 13 12 10 16 16 C 1.40210 * 119.83340 * 359.97436 * 15 13 12 17 17 C 1.36232 * 120.37683 * 179.97438 * 16 15 13 18 18 C 1.39874 * 119.96331 * 0.02562 * 17 16 15 19 19 C 1.46254 * 133.84306 * 179.97438 * 18 17 16 20 20 C 1.50703 * 126.47950 * 0.03145 * 19 18 17 21 21 O 1.42898 * 109.47319 * 74.99731 * 20 19 18 22 22 Si 1.86300 * 109.46898 * 194.99806 * 20 19 18 23 23 C 1.34455 * 107.03781 * 180.02562 * 19 18 17 24 24 N 1.36569 * 109.98207 * 359.97438 * 23 19 18 25 25 C 1.37829 * 109.85987 * 359.76823 * 24 23 19 26 26 C 1.38647 * 133.37394 * 179.51319 * 25 24 23 27 27 C 1.53006 * 109.46954 * 59.99854 * 10 9 8 28 28 C 1.52995 * 109.47164 * 180.02562 * 6 4 3 29 29 H 1.08996 * 109.47466 * 299.99602 * 1 2 3 30 30 H 1.09007 * 109.47382 * 59.99656 * 1 2 3 31 31 H 1.08999 * 109.47402 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.46740 * 240.00338 * 2 1 3 33 33 H 1.08994 * 109.47263 * 120.00227 * 2 1 3 34 34 H 1.09000 * 109.47292 * 299.99815 * 8 6 4 35 35 H 1.08994 * 109.47614 * 60.00029 * 8 6 4 36 36 H 1.09002 * 109.47530 * 180.02562 * 9 8 6 37 37 H 1.08998 * 109.47384 * 60.00135 * 9 8 6 38 38 H 0.97001 * 120.00607 * 265.00058 * 12 10 9 39 39 H 1.07997 * 119.80704 * 359.97438 * 16 15 13 40 40 H 1.08003 * 120.01709 * 180.02562 * 17 16 15 41 41 H 1.09005 * 109.46921 * 314.99280 * 20 19 18 42 42 H 0.96697 * 113.99851 * 60.00219 * 21 20 19 43 43 H 1.48500 * 110.00277 * 179.97438 * 22 20 19 44 44 H 1.48503 * 109.99851 * 301.31555 * 22 20 19 45 45 H 1.07996 * 125.00829 * 180.02562 * 23 19 18 46 46 H 0.96996 * 125.06417 * 179.97438 * 24 23 19 47 47 H 1.08002 * 120.17127 * 0.67896 * 26 25 24 48 48 H 1.08998 * 109.46585 * 60.00227 * 27 10 9 49 49 H 1.08993 * 109.46938 * 179.97438 * 27 10 9 50 50 H 1.08999 * 109.47567 * 59.99998 * 28 6 4 51 51 H 1.08999 * 109.47409 * 299.99913 * 28 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3689 0.0000 4 6 3.3446 1.5449 0.0005 5 8 4.0807 0.5867 0.0005 6 6 3.9207 2.9374 0.0012 7 1 3.5850 3.4698 -0.8888 8 6 3.4487 3.6839 1.2505 9 6 4.0330 5.0980 1.2508 10 6 5.5609 5.0185 1.2511 11 1 5.8969 4.4862 2.1409 12 7 6.1204 6.3724 1.2508 13 6 6.2836 7.0343 2.4135 14 8 5.9661 6.5079 3.4625 15 6 6.8467 8.3984 2.4132 16 6 7.2111 9.0023 1.2014 17 6 7.7314 10.2613 1.1883 18 6 7.9049 10.9581 2.3886 19 6 8.4206 12.2849 2.7244 20 6 8.9379 13.3167 1.7555 21 8 7.8386 13.9204 1.0706 22 14 9.8830 14.6244 2.6869 23 6 8.3458 12.4099 4.0611 24 7 7.8241 11.2724 4.6077 25 6 7.5371 10.3634 3.6122 26 6 7.0131 9.0798 3.6170 27 6 6.0329 4.2719 0.0017 28 6 5.4485 2.8573 0.0010 29 1 -0.3634 0.5137 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 2.3602 3.7410 1.2501 35 1 3.7843 3.1516 2.1404 36 1 3.6972 5.6297 2.1411 37 1 3.6970 5.6302 0.3609 38 1 6.3734 6.7925 0.4139 39 1 7.0786 8.4663 0.2733 40 1 8.0098 10.7211 0.2515 41 1 9.5977 12.8374 1.0322 42 1 7.2092 14.3667 1.6535 43 1 10.3990 15.6477 1.7425 44 1 9.0032 15.2636 3.6981 45 1 8.6523 13.2818 4.6199 46 1 7.6748 11.1271 5.5551 47 1 6.7320 8.6117 4.5488 48 1 5.6969 4.8041 -0.8882 49 1 7.1214 4.2156 0.0017 50 1 5.7845 2.3256 -0.8892 51 1 5.7846 2.3248 0.8907 There are 69 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 69 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14589458_12335838.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 02:27:45 Heat of formation + Delta-G solvation = -104.458231 kcal Electronic energy + Delta-G solvation = -32996.229778 eV Core-core repulsion = 28440.963744 eV Total energy + Delta-G solvation = -4555.266034 eV No. of doubly occupied orbitals = 69 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 373.177 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -42.44881 -41.87094 -41.02437 -39.18496 -37.96164 -37.69331 -37.45109 -35.40356 -33.24965 -32.78318 -31.83617 -31.54310 -30.70072 -29.95566 -26.51290 -25.83069 -24.49605 -23.84942 -23.60531 -23.44666 -21.95811 -21.46701 -20.90495 -20.69912 -19.38058 -18.76321 -18.39957 -17.87832 -17.66684 -17.52684 -17.17391 -16.93978 -16.28127 -16.07188 -15.97080 -15.64087 -15.45431 -15.25267 -15.05628 -14.96170 -14.81293 -14.74778 -14.52248 -14.46663 -14.09120 -13.88087 -13.80557 -13.49225 -13.26895 -13.06106 -12.95225 -12.76150 -12.63038 -12.52601 -12.48455 -12.37625 -12.19377 -12.17988 -11.76204 -11.62620 -11.53985 -11.46294 -11.35874 -11.02174 -10.76833 -10.43912 -10.12908 -9.34360 -8.78066 -4.82626 -0.29945 0.40257 1.08901 1.40154 1.41377 1.62222 1.65126 1.91372 1.93449 2.05791 2.27017 2.89633 3.45419 3.53185 3.57165 3.62225 3.66328 3.74650 3.88660 3.90976 3.93499 3.96569 4.02658 4.08023 4.15096 4.17536 4.29300 4.30598 4.31686 4.34436 4.43016 4.50370 4.56508 4.60892 4.63880 4.75606 4.81980 4.82404 4.87864 4.93954 4.99654 5.04526 5.07885 5.09813 5.14559 5.23347 5.26367 5.29434 5.42335 5.44349 5.47476 5.55455 5.63748 6.00438 6.50997 6.52972 6.63252 6.65080 7.18154 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.053 3.947 3 O -0.360 6.360 4 C 0.463 3.537 5 O -0.541 6.541 6 C -0.074 4.074 7 H 0.138 0.862 8 C -0.102 4.102 9 C -0.120 4.120 10 C 0.142 3.858 11 H 0.065 0.935 12 N -0.706 5.706 13 C 0.562 3.438 14 O -0.582 6.582 15 C -0.136 4.136 16 C -0.106 4.106 17 C -0.083 4.083 18 C -0.080 4.080 19 C -0.224 4.224 20 C -0.047 4.047 21 O -0.553 6.553 22 Si 0.771 3.229 23 C 0.089 3.911 24 N -0.578 5.578 25 C 0.067 3.933 26 C -0.069 4.069 27 C -0.114 4.114 28 C -0.098 4.098 29 H 0.067 0.933 30 H 0.070 0.930 31 H 0.095 0.905 32 H 0.068 0.932 33 H 0.064 0.936 34 H 0.087 0.913 35 H 0.056 0.944 36 H 0.055 0.945 37 H 0.091 0.909 38 H 0.416 0.584 39 H 0.155 0.845 40 H 0.140 0.860 41 H 0.114 0.886 42 H 0.383 0.617 43 H -0.308 1.308 44 H -0.269 1.269 45 H 0.206 0.794 46 H 0.434 0.566 47 H 0.126 0.874 48 H 0.100 0.900 49 H 0.084 0.916 50 H 0.080 0.920 51 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.687 3.887 -1.086 4.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.020 4.020 3 O -0.277 6.277 4 C 0.308 3.692 5 O -0.431 6.431 6 C -0.093 4.093 7 H 0.156 0.844 8 C -0.140 4.140 9 C -0.159 4.159 10 C 0.038 3.962 11 H 0.084 0.916 12 N -0.358 5.358 13 C 0.351 3.649 14 O -0.464 6.464 15 C -0.140 4.140 16 C -0.126 4.126 17 C -0.102 4.102 18 C -0.085 4.085 19 C -0.232 4.232 20 C -0.156 4.156 21 O -0.361 6.361 22 Si 0.675 3.325 23 C -0.040 4.040 24 N -0.181 5.181 25 C -0.040 4.040 26 C -0.090 4.090 27 C -0.152 4.152 28 C -0.137 4.137 29 H 0.086 0.914 30 H 0.089 0.911 31 H 0.114 0.886 32 H 0.087 0.913 33 H 0.083 0.917 34 H 0.105 0.895 35 H 0.075 0.925 36 H 0.073 0.927 37 H 0.110 0.890 38 H 0.254 0.746 39 H 0.172 0.828 40 H 0.158 0.842 41 H 0.132 0.868 42 H 0.232 0.768 43 H -0.236 1.236 44 H -0.195 1.195 45 H 0.223 0.777 46 H 0.274 0.726 47 H 0.144 0.856 48 H 0.118 0.882 49 H 0.103 0.897 50 H 0.099 0.901 51 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 0.986 3.755 -0.522 3.917 hybrid contribution -1.186 -0.193 0.185 1.216 sum -0.200 3.562 -0.337 3.584 Atomic orbital electron populations 1.21822 0.90678 1.04240 1.03752 1.23237 0.96934 0.79465 1.02379 1.86516 1.24349 1.33355 1.83472 1.24347 0.80525 0.93359 0.70966 1.90669 1.61131 1.44495 1.46782 1.21261 0.96630 0.88224 1.03191 0.84441 1.21419 1.01943 0.95158 0.95493 1.21848 0.94465 0.96276 1.03297 1.21052 0.93365 0.82037 0.99786 0.91647 1.45822 1.64202 1.16755 1.08999 1.18372 0.77183 0.85616 0.83733 1.90770 1.52820 1.69797 1.32975 1.19486 1.05960 0.94217 0.94336 1.20924 0.99285 0.95399 0.96959 1.20420 0.98620 0.93982 0.97153 1.19548 1.01363 0.94791 0.92818 1.20757 1.12462 0.95932 0.94040 1.24545 0.92748 0.99298 0.99040 1.86572 1.37804 1.73591 1.38141 0.94165 0.83604 0.76431 0.78257 1.22282 0.97321 0.90947 0.93494 1.41806 1.54311 1.12696 1.09280 1.18134 1.04285 0.92447 0.89137 1.20131 0.98881 0.91408 0.98586 1.21760 1.01838 0.94329 0.97263 1.21366 0.91477 0.97256 1.03564 0.91357 0.91092 0.88613 0.91315 0.91717 0.89489 0.92495 0.92663 0.89037 0.74552 0.82784 0.84216 0.86791 0.76762 1.23633 1.19502 0.77724 0.72636 0.85562 0.88174 0.89732 0.90104 0.92354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.41 10.29 71.98 0.74 1.15 16 2 C 0.05 0.11 6.19 71.98 0.45 0.55 16 3 O -0.36 -1.53 10.12 -51.39 -0.52 -2.05 16 4 C 0.46 2.40 7.25 71.24 0.52 2.91 16 5 O -0.54 -6.32 15.73 21.96 0.35 -5.98 16 6 C -0.07 0.12 2.63 -11.54 -0.03 0.09 16 7 H 0.14 -0.90 8.14 -2.39 -0.02 -0.92 16 8 C -0.10 0.11 5.14 30.59 0.16 0.26 16 9 C -0.12 0.17 5.49 30.59 0.17 0.34 16 10 C 0.14 -0.11 2.45 44.99 0.11 0.00 16 11 H 0.07 0.34 7.58 -2.39 -0.02 0.32 16 12 N -0.71 0.83 5.03 -445.65 -2.24 -1.41 16 13 C 0.56 3.47 7.73 86.70 0.67 4.14 16 14 O -0.58 -8.45 15.98 -4.01 -0.06 -8.52 16 15 C -0.14 -0.55 5.87 -20.08 -0.12 -0.67 16 16 C -0.11 0.06 9.46 22.28 0.21 0.27 16 17 C -0.08 -0.09 10.03 22.20 0.22 0.13 16 18 C -0.08 -0.23 6.35 -20.14 -0.13 -0.36 16 19 C -0.22 0.21 5.57 -18.64 -0.10 0.10 16 20 C -0.05 0.09 3.06 71.24 0.22 0.31 16 21 O -0.55 -1.00 12.88 -148.98 -1.92 -2.92 16 22 Si 0.77 -3.76 30.82 68.60 2.11 -1.64 16 23 C 0.09 -0.43 10.43 83.09 0.87 0.43 16 24 N -0.58 1.85 6.07 -187.71 -1.14 0.71 16 25 C 0.07 0.18 7.26 38.96 0.28 0.47 16 26 C -0.07 -0.35 9.61 22.63 0.22 -0.13 16 27 C -0.11 0.64 5.39 30.61 0.17 0.81 16 28 C -0.10 0.16 4.50 30.61 0.14 0.30 16 29 H 0.07 -0.18 8.14 -2.39 -0.02 -0.20 16 30 H 0.07 -0.22 8.14 -2.38 -0.02 -0.24 16 31 H 0.10 -0.54 8.14 -2.39 -0.02 -0.56 16 32 H 0.07 0.15 8.13 -2.39 -0.02 0.13 16 33 H 0.06 0.19 8.13 -2.39 -0.02 0.17 16 34 H 0.09 -0.15 8.11 -2.39 -0.02 -0.17 16 35 H 0.06 0.12 8.14 -2.39 -0.02 0.10 16 36 H 0.05 0.20 8.14 -2.39 -0.02 0.18 16 37 H 0.09 -0.48 8.14 -2.39 -0.02 -0.50 16 38 H 0.42 -3.14 6.59 -92.71 -0.61 -3.75 16 39 H 0.15 -1.17 6.36 -2.91 -0.02 -1.18 16 40 H 0.14 -0.20 8.06 -2.91 -0.02 -0.22 16 41 H 0.11 -0.26 7.96 -2.38 -0.02 -0.27 16 42 H 0.38 -1.49 8.70 -74.06 -0.64 -2.14 16 43 H -0.31 -1.23 7.11 99.48 0.71 -0.53 16 44 H -0.27 0.90 7.00 99.48 0.70 1.60 16 45 H 0.21 -2.38 6.27 -2.91 -0.02 -2.40 16 46 H 0.43 -3.68 8.96 -92.71 -0.83 -4.51 16 47 H 0.13 0.75 7.62 -2.91 -0.02 0.73 16 48 H 0.10 -1.03 8.14 -2.39 -0.02 -1.04 16 49 H 0.08 -0.50 8.14 -2.39 -0.02 -0.52 16 50 H 0.08 -0.10 8.10 -2.39 -0.02 -0.12 16 51 H 0.06 0.14 8.10 -2.39 -0.02 0.12 16 Total: 0.00 -26.89 417.38 0.25 -26.64 By element: Atomic # 1 Polarization: -14.86 SS G_CDS: -1.07 Total: -15.94 kcal Atomic # 6 Polarization: 6.35 SS G_CDS: 4.75 Total: 11.10 kcal Atomic # 7 Polarization: 2.68 SS G_CDS: -3.38 Total: -0.69 kcal Atomic # 8 Polarization: -17.30 SS G_CDS: -2.16 Total: -19.46 kcal Atomic # 14 Polarization: -3.76 SS G_CDS: 2.11 Total: -1.64 kcal Total: -26.89 0.25 -26.64 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14589458_12335838.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.821 kcal (2) G-P(sol) polarization free energy of solvation -26.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -26.637 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds