Wall clock time and date at job start Sun Mar 7 2021 02:28:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.45194 * 109.47456 * 2 1 4 4 C 1.34226 * 117.00487 * 180.02562 * 3 2 1 5 5 O 1.20828 * 119.99514 * 359.97438 * 4 3 2 6 6 C 1.50693 * 120.00533 * 180.02562 * 4 3 2 7 7 H 1.09002 * 109.47624 * 59.99295 * 6 4 3 8 8 C 1.53002 * 109.47531 * 179.97438 * 6 4 3 9 9 C 1.53000 * 109.47233 * 180.02562 * 8 6 4 10 10 C 1.52997 * 109.47060 * 299.99657 * 9 8 6 11 11 H 1.09002 * 109.47153 * 300.00319 * 10 9 8 12 12 N 1.46500 * 109.47473 * 180.02562 * 10 9 8 13 13 C 1.34777 * 120.00270 * 154.99797 * 12 10 9 14 14 O 1.21699 * 119.99595 * 0.02562 * 13 12 10 15 15 C 1.46427 * 120.00351 * 180.02562 * 13 12 10 16 16 C 1.34800 * 120.00181 * 180.02562 * 15 13 12 17 17 C 1.47207 * 120.00053 * 180.02562 * 16 15 13 18 18 C 1.39840 * 120.16890 * 359.71905 * 17 16 15 19 19 C 1.37891 * 119.82628 * 179.81624 * 18 17 16 20 20 C 1.38404 * 120.16816 * 0.44028 * 19 18 17 21 21 C 1.50707 * 119.82531 * 179.76760 * 20 19 18 22 22 O 1.42899 * 109.46944 * 120.02375 * 21 20 19 23 23 Si 1.86305 * 109.47145 * 0.02562 * 21 20 19 24 24 C 1.38394 * 120.34755 * 359.79266 * 20 19 18 25 25 C 1.37887 * 120.17176 * 359.97438 * 24 20 19 26 26 C 1.52999 * 109.47317 * 59.99960 * 10 9 8 27 27 C 1.52997 * 109.46989 * 299.99591 * 6 4 3 28 28 H 1.08999 * 109.46933 * 59.99807 * 1 2 3 29 29 H 1.09000 * 109.47532 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47319 * 300.00114 * 1 2 3 31 31 H 1.09002 * 109.47319 * 239.99886 * 2 1 3 32 32 H 1.08999 * 109.46933 * 120.00193 * 2 1 3 33 33 H 1.08992 * 109.47063 * 59.99724 * 8 6 4 34 34 H 1.09004 * 109.46733 * 299.99437 * 8 6 4 35 35 H 1.09002 * 109.47398 * 59.99826 * 9 8 6 36 36 H 1.09001 * 109.47194 * 180.02562 * 9 8 6 37 37 H 0.97000 * 119.99491 * 335.00093 * 12 10 9 38 38 H 1.08003 * 119.99459 * 359.97438 * 15 13 12 39 39 H 1.08003 * 120.00360 * 359.97438 * 16 15 13 40 40 H 1.08003 * 120.08579 * 0.02562 * 18 17 16 41 41 H 1.07993 * 119.91412 * 180.20979 * 19 18 17 42 42 H 1.09001 * 109.46700 * 240.02210 * 21 20 19 43 43 H 0.96699 * 113.99756 * 299.99886 * 22 21 20 44 44 H 1.48501 * 109.99748 * 58.68040 * 23 21 20 45 45 H 1.48499 * 109.99867 * 179.97438 * 23 21 20 46 46 H 1.08002 * 119.91967 * 179.97438 * 24 20 19 47 47 H 1.08001 * 120.08989 * 179.97438 * 25 24 20 48 48 H 1.09000 * 109.47486 * 180.02562 * 26 10 9 49 49 H 1.09002 * 109.46716 * 60.00091 * 26 10 9 50 50 H 1.09002 * 109.47153 * 299.99998 * 27 6 4 51 51 H 1.09001 * 109.47289 * 60.00082 * 27 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3447 1.5448 -0.0005 5 8 4.0807 0.5865 -0.0005 6 6 3.9208 2.9373 0.0000 7 1 3.5852 3.4690 0.8904 8 6 5.4487 2.8572 -0.0001 9 6 6.0335 4.2710 0.0011 10 6 5.5620 5.0190 -1.2475 11 1 5.8979 4.4876 -2.1380 12 7 6.1224 6.3726 -1.2468 13 6 6.2860 7.0349 -2.4091 14 8 5.9677 6.5087 -3.4593 15 6 6.8467 8.3876 -2.4084 16 6 7.0098 9.0502 -3.5709 17 6 7.5739 10.4099 -3.5703 18 6 7.9364 11.0197 -2.3652 19 6 8.4678 12.2921 -2.3731 20 6 8.6342 12.9690 -3.5688 21 6 9.2108 14.3614 -3.5680 22 8 10.4122 14.3798 -4.3415 23 14 9.5910 14.8751 -1.8180 24 6 8.2734 12.3740 -4.7652 25 6 7.7451 11.1004 -4.7742 26 6 4.0341 5.0991 -1.2475 27 6 3.4487 3.6849 -1.2486 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5139 0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 5.7846 2.3254 -0.8903 34 1 5.7847 2.3247 0.8897 35 1 5.6976 4.8024 0.8915 36 1 7.1220 4.2140 0.0005 37 1 6.3758 6.7921 -0.4097 38 1 7.1287 8.8547 -1.4764 39 1 6.7273 8.5833 -4.5030 40 1 7.8037 10.4942 -1.4310 41 1 8.7513 12.7631 -1.4436 42 1 8.4890 15.0537 -4.0014 43 1 11.1007 13.7856 -4.0129 44 1 10.5497 13.9207 -1.2055 45 1 10.1608 16.2463 -1.8037 46 1 8.4058 12.9087 -5.6942 47 1 7.4636 10.6375 -5.7085 48 1 3.6981 5.6316 -2.1373 49 1 3.6982 5.6305 -0.3571 50 1 3.7843 3.1532 -2.1390 51 1 2.3602 3.7420 -1.2481 There are 67 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 67 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14589458_12360594.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 02:28:23 Heat of formation + Delta-G solvation = -123.592377 kcal Electronic energy + Delta-G solvation = -30531.362621 eV Core-core repulsion = 26168.918920 eV Total energy + Delta-G solvation = -4362.443701 eV No. of doubly occupied orbitals = 67 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 360.182 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.87399 -41.03082 -40.52553 -39.09143 -37.90884 -37.67755 -35.33817 -35.06390 -32.77523 -32.22294 -31.83147 -31.57035 -30.57894 -27.23310 -25.61799 -24.24107 -23.92934 -23.81396 -23.29928 -22.11497 -21.67883 -21.09318 -20.23994 -18.87320 -18.73242 -18.13137 -17.75083 -17.65776 -17.37149 -16.83697 -16.55436 -16.20950 -16.09074 -15.84548 -15.50881 -15.23602 -15.12489 -14.95467 -14.87261 -14.53887 -14.48310 -14.18348 -14.06531 -13.83174 -13.77721 -13.47980 -13.26159 -13.25637 -13.03525 -12.95254 -12.74888 -12.52579 -12.38885 -12.25827 -12.19024 -12.08952 -11.62577 -11.60912 -11.53906 -11.45981 -11.36169 -11.32029 -10.97510 -10.61465 -10.08694 -9.96540 -9.22454 -4.91376 -0.52919 0.41118 0.90798 1.08729 1.31774 1.61043 1.62467 1.97847 2.19055 2.27047 2.82808 3.39579 3.45306 3.53698 3.59550 3.64609 3.71859 3.82538 3.92380 3.96574 3.96800 4.02796 4.08947 4.16048 4.20809 4.23547 4.29872 4.31707 4.34618 4.37781 4.43294 4.48292 4.58137 4.63724 4.75977 4.82685 4.86485 4.88131 4.93357 4.99903 5.04488 5.08025 5.09974 5.11599 5.14843 5.18572 5.26518 5.30639 5.40466 5.43241 5.48967 5.54340 5.62171 5.91691 6.46998 6.59911 6.64896 7.27082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.053 3.947 3 O -0.360 6.360 4 C 0.463 3.537 5 O -0.542 6.542 6 C -0.074 4.074 7 H 0.139 0.861 8 C -0.100 4.100 9 C -0.113 4.113 10 C 0.141 3.859 11 H 0.061 0.939 12 N -0.706 5.706 13 C 0.541 3.459 14 O -0.593 6.593 15 C -0.205 4.205 16 C -0.024 4.024 17 C -0.080 4.080 18 C -0.094 4.094 19 C -0.121 4.121 20 C -0.110 4.110 21 C -0.089 4.089 22 O -0.550 6.550 23 Si 0.772 3.228 24 C -0.108 4.108 25 C -0.105 4.105 26 C -0.119 4.119 27 C -0.103 4.103 28 H 0.067 0.933 29 H 0.095 0.905 30 H 0.071 0.929 31 H 0.064 0.936 32 H 0.068 0.932 33 H 0.056 0.944 34 H 0.079 0.921 35 H 0.101 0.899 36 H 0.083 0.917 37 H 0.420 0.580 38 H 0.166 0.834 39 H 0.119 0.881 40 H 0.160 0.840 41 H 0.151 0.849 42 H 0.124 0.876 43 H 0.386 0.614 44 H -0.279 1.279 45 H -0.307 1.307 46 H 0.128 0.872 47 H 0.134 0.866 48 H 0.054 0.946 49 H 0.093 0.907 50 H 0.054 0.946 51 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.781 3.042 7.222 8.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.020 4.020 3 O -0.277 6.277 4 C 0.307 3.693 5 O -0.432 6.432 6 C -0.092 4.092 7 H 0.157 0.843 8 C -0.138 4.138 9 C -0.150 4.150 10 C 0.036 3.964 11 H 0.079 0.921 12 N -0.357 5.357 13 C 0.331 3.669 14 O -0.476 6.476 15 C -0.225 4.225 16 C -0.044 4.044 17 C -0.080 4.080 18 C -0.111 4.111 19 C -0.138 4.138 20 C -0.111 4.111 21 C -0.197 4.197 22 O -0.358 6.358 23 Si 0.677 3.323 24 C -0.126 4.126 25 C -0.122 4.122 26 C -0.158 4.158 27 C -0.141 4.141 28 H 0.086 0.914 29 H 0.114 0.886 30 H 0.090 0.910 31 H 0.082 0.918 32 H 0.087 0.913 33 H 0.074 0.926 34 H 0.098 0.902 35 H 0.120 0.880 36 H 0.101 0.899 37 H 0.258 0.742 38 H 0.184 0.816 39 H 0.137 0.863 40 H 0.177 0.823 41 H 0.168 0.832 42 H 0.142 0.858 43 H 0.235 0.765 44 H -0.205 1.205 45 H -0.236 1.236 46 H 0.146 0.854 47 H 0.152 0.848 48 H 0.073 0.927 49 H 0.111 0.889 50 H 0.073 0.927 51 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -2.553 3.005 6.730 7.800 hybrid contribution 1.113 -0.862 -0.925 1.685 sum -1.440 2.143 5.804 6.353 Atomic orbital electron populations 1.21821 0.90645 1.04240 1.03777 1.23236 0.96957 0.79470 1.02354 1.86513 1.24334 1.33344 1.83461 1.24372 0.80532 0.93399 0.70954 1.90670 1.61153 1.44527 1.46809 1.21259 0.96570 0.88179 1.03231 0.84332 1.21367 0.91552 0.97435 1.03428 1.21737 1.01699 0.94219 0.97390 1.21003 0.93366 0.82527 0.99488 0.92121 1.45796 1.64002 1.16608 1.09255 1.18770 0.77621 0.86944 0.83534 1.90824 1.53155 1.70402 1.33180 1.23035 1.05026 0.93801 1.00685 1.22347 0.91457 0.91760 0.98860 1.19127 1.00994 0.93690 0.94229 1.21663 0.96541 0.94770 0.98169 1.21186 0.99984 0.95114 0.97556 1.20543 0.99704 0.96783 0.94032 1.25338 0.88559 0.96322 1.09477 1.86578 1.25798 1.68088 1.55331 0.94081 0.87647 0.75738 0.74842 1.21058 0.98067 0.95091 0.98350 1.21603 0.97897 0.94639 0.98111 1.21846 0.94478 0.96119 1.03317 1.21440 1.01961 0.95314 0.95401 0.91354 0.88634 0.91038 0.91774 0.91318 0.92565 0.90190 0.88047 0.89883 0.74248 0.81629 0.86266 0.82302 0.83232 0.85839 0.76463 1.20524 1.23581 0.85443 0.84797 0.92700 0.88862 0.92723 0.89478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.47 10.29 71.98 0.74 1.21 16 2 C 0.05 0.09 6.19 71.98 0.45 0.53 16 3 O -0.36 -1.37 10.12 -51.38 -0.52 -1.89 16 4 C 0.46 2.20 7.25 71.23 0.52 2.71 16 5 O -0.54 -6.17 15.73 21.96 0.35 -5.83 16 6 C -0.07 0.17 2.63 -11.54 -0.03 0.14 16 7 H 0.14 -1.03 8.14 -2.39 -0.02 -1.05 16 8 C -0.10 0.22 4.49 30.60 0.14 0.36 16 9 C -0.11 0.76 5.39 30.59 0.16 0.93 16 10 C 0.14 -0.31 2.45 44.99 0.11 -0.20 16 11 H 0.06 0.28 7.58 -2.39 -0.02 0.26 16 12 N -0.71 2.86 5.07 -446.76 -2.27 0.60 16 13 C 0.54 1.46 7.71 86.38 0.67 2.13 16 14 O -0.59 -7.56 15.89 -4.35 -0.07 -7.63 16 15 C -0.21 0.55 9.41 23.61 0.22 0.77 16 16 C -0.02 -0.01 9.46 23.84 0.23 0.22 16 17 C -0.08 0.08 5.87 -20.15 -0.12 -0.04 16 18 C -0.09 0.44 9.41 22.58 0.21 0.65 16 19 C -0.12 0.54 8.65 22.23 0.19 0.73 16 20 C -0.11 0.19 5.40 -19.79 -0.11 0.08 16 21 C -0.09 0.17 2.82 71.24 0.20 0.37 16 22 O -0.55 -0.98 12.76 -148.98 -1.90 -2.88 16 23 Si 0.77 -3.00 29.77 68.60 2.04 -0.96 16 24 C -0.11 -0.02 9.59 22.22 0.21 0.19 16 25 C -0.10 -0.01 9.80 22.57 0.22 0.21 16 26 C -0.12 0.32 5.50 30.61 0.17 0.48 16 27 C -0.10 0.18 5.14 30.61 0.16 0.33 16 28 H 0.07 -0.20 8.14 -2.39 -0.02 -0.22 16 29 H 0.10 -0.57 8.14 -2.39 -0.02 -0.59 16 30 H 0.07 -0.26 8.14 -2.39 -0.02 -0.28 16 31 H 0.06 0.17 8.13 -2.39 -0.02 0.15 16 32 H 0.07 0.12 8.13 -2.39 -0.02 0.10 16 33 H 0.06 0.12 8.10 -2.39 -0.02 0.11 16 34 H 0.08 -0.14 8.10 -2.39 -0.02 -0.16 16 35 H 0.10 -1.18 8.14 -2.39 -0.02 -1.20 16 36 H 0.08 -0.58 8.14 -2.39 -0.02 -0.60 16 37 H 0.42 -4.80 8.58 -92.71 -0.80 -5.59 16 38 H 0.17 -1.76 6.07 -2.91 -0.02 -1.77 16 39 H 0.12 0.43 7.52 -2.91 -0.02 0.40 16 40 H 0.16 -1.73 6.17 -2.91 -0.02 -1.75 16 41 H 0.15 -1.34 4.85 -2.91 -0.01 -1.35 16 42 H 0.12 -0.38 7.96 -2.39 -0.02 -0.40 16 43 H 0.39 -1.47 8.70 -74.06 -0.64 -2.11 16 44 H -0.28 0.20 7.11 99.48 0.71 0.91 16 45 H -0.31 -1.43 7.11 99.48 0.71 -0.72 16 46 H 0.13 0.00 8.06 -2.91 -0.02 -0.03 16 47 H 0.13 -0.21 8.06 -2.91 -0.02 -0.23 16 48 H 0.05 0.13 8.14 -2.39 -0.02 0.11 16 49 H 0.09 -0.65 8.14 -2.39 -0.02 -0.67 16 50 H 0.05 0.10 8.14 -2.39 -0.02 0.09 16 51 H 0.09 -0.21 8.11 -2.39 -0.02 -0.23 16 Total: 0.00 -25.12 418.42 1.52 -23.60 By element: Atomic # 1 Polarization: -16.37 SS G_CDS: -0.45 Total: -16.82 kcal Atomic # 6 Polarization: 7.47 SS G_CDS: 4.34 Total: 11.81 kcal Atomic # 7 Polarization: 2.86 SS G_CDS: -2.27 Total: 0.60 kcal Atomic # 8 Polarization: -16.08 SS G_CDS: -2.15 Total: -18.23 kcal Atomic # 14 Polarization: -3.00 SS G_CDS: 2.04 Total: -0.96 kcal Total: -25.12 1.52 -23.60 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14589458_12360594.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.993 kcal (2) G-P(sol) polarization free energy of solvation -25.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.599 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.592 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds