Wall clock time and date at job start Sun Mar 7 2021 02:28:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.45203 * 109.46699 * 2 1 4 4 C 1.34227 * 116.99701 * 180.02562 * 3 2 1 5 5 O 1.20831 * 120.00113 * 359.97438 * 4 3 2 6 6 C 1.50708 * 120.00200 * 179.97438 * 4 3 2 7 7 H 1.09002 * 109.46846 * 299.99862 * 6 4 3 8 8 C 1.53002 * 109.46682 * 59.99819 * 6 4 3 9 9 C 1.53005 * 109.46845 * 180.02562 * 8 6 4 10 10 C 1.52997 * 109.47149 * 300.00081 * 9 8 6 11 11 H 1.09002 * 109.47077 * 299.99720 * 10 9 8 12 12 N 1.46495 * 109.47325 * 179.97438 * 10 9 8 13 13 C 1.34779 * 119.99996 * 84.99834 * 12 10 9 14 14 O 1.21588 * 119.99948 * 0.02562 * 13 12 10 15 15 C 1.47538 * 119.99894 * 180.02562 * 13 12 10 16 16 C 1.40145 * 120.18908 * 179.97438 * 15 13 12 17 17 O 1.35651 * 120.14902 * 359.70229 * 16 15 13 18 18 C 1.42898 * 117.00125 * 180.02562 * 17 16 15 19 19 C 1.38704 * 119.69772 * 179.72285 * 16 15 13 20 20 C 1.38053 * 120.08771 * 359.97438 * 19 16 15 21 21 C 1.38550 * 120.38759 * 0.02562 * 20 19 16 22 22 C 1.50707 * 119.84971 * 179.97438 * 21 20 19 23 23 O 1.42901 * 109.46968 * 245.00354 * 22 21 20 24 24 Si 1.86301 * 109.46818 * 4.99686 * 22 21 20 25 25 C 1.37786 * 120.30372 * 359.97438 * 21 20 19 26 26 C 1.53001 * 109.47201 * 59.99830 * 10 9 8 27 27 C 1.52994 * 109.47066 * 179.97438 * 6 4 3 28 28 H 1.09004 * 109.46896 * 300.00030 * 1 2 3 29 29 H 1.08995 * 109.47448 * 60.00084 * 1 2 3 30 30 H 1.09000 * 109.47065 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47303 * 240.00481 * 2 1 3 32 32 H 1.09000 * 109.47415 * 119.99440 * 2 1 3 33 33 H 1.09001 * 109.47450 * 299.99860 * 8 6 4 34 34 H 1.09002 * 109.47445 * 60.00410 * 8 6 4 35 35 H 1.09000 * 109.46932 * 179.97438 * 9 8 6 36 36 H 1.09002 * 109.46903 * 59.99908 * 9 8 6 37 37 H 0.97002 * 120.00683 * 265.00492 * 12 10 9 38 38 H 1.09004 * 109.47416 * 59.99348 * 18 17 16 39 39 H 1.08998 * 109.47362 * 179.97438 * 18 17 16 40 40 H 1.09002 * 109.47019 * 300.00266 * 18 17 16 41 41 H 1.07999 * 119.95565 * 180.02562 * 19 16 15 42 42 H 1.07998 * 119.80976 * 180.02562 * 20 19 16 43 43 H 1.08996 * 109.46865 * 124.99545 * 22 21 20 44 44 H 0.96692 * 114.00384 * 59.99439 * 23 22 21 45 45 H 1.48497 * 109.99702 * 180.02562 * 24 22 21 46 46 H 1.48493 * 110.00394 * 301.31837 * 24 22 21 47 47 H 1.07993 * 120.04990 * 180.02562 * 25 21 20 48 48 H 1.09002 * 109.47195 * 59.99962 * 26 10 9 49 49 H 1.09001 * 109.47337 * 180.02562 * 26 10 9 50 50 H 1.09000 * 109.47355 * 60.00325 * 27 6 4 51 51 H 1.09002 * 109.47387 * 299.99790 * 27 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3446 1.5449 -0.0005 5 8 4.0807 0.5867 -0.0005 6 6 3.9206 2.9376 -0.0012 7 1 3.5844 3.4694 -0.8912 8 6 3.4495 3.6848 1.2481 9 6 4.0338 5.0989 1.2472 10 6 5.5617 5.0194 1.2463 11 1 5.8983 4.4878 2.1364 12 7 6.1211 6.3733 1.2448 13 6 6.2851 7.0360 2.4070 14 8 5.9691 6.5099 3.4566 15 6 6.8481 8.3998 2.4054 16 6 7.0198 9.0927 3.6114 17 8 6.6635 8.5149 4.7858 18 6 6.8673 9.2817 5.9743 19 6 7.5553 10.3721 3.5986 20 6 7.9175 10.9588 2.4026 21 6 7.7493 10.2770 1.2082 22 6 8.1484 10.9293 -0.0905 23 8 6.9860 11.1397 -0.8947 24 14 8.9642 12.5667 0.2620 25 6 7.2189 9.0054 1.2023 26 6 6.0328 4.2721 -0.0028 27 6 5.4485 2.8575 -0.0010 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 1.8933 -0.5137 -0.8900 32 1 1.8934 -0.5137 0.8900 33 1 2.3609 3.7419 1.2484 34 1 3.7857 3.1530 2.1381 35 1 3.6977 5.6314 2.1369 36 1 3.6971 5.6305 0.3571 37 1 6.3735 6.7930 0.4075 38 1 6.2900 10.2044 5.9148 39 1 6.5411 8.7046 6.8395 40 1 7.9258 9.5214 6.0750 41 1 7.6899 10.9097 4.5255 42 1 8.3345 11.9550 2.3978 43 1 8.8462 10.2827 -0.6224 44 1 6.3203 11.7074 -0.4830 45 1 9.3619 13.2203 -1.0106 46 1 8.0342 13.4460 1.0150 47 1 7.0899 8.4776 0.2690 48 1 5.6962 4.8037 -0.8929 49 1 7.1213 4.2150 -0.0032 50 1 5.7845 2.3250 -0.8908 51 1 5.7844 2.3258 0.8892 There are 68 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 68 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14589458_12496546.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 02:28:32 Heat of formation + Delta-G solvation = -168.646690 kcal Electronic energy + Delta-G solvation = -33116.828873 eV Core-core repulsion = 28561.975418 eV Total energy + Delta-G solvation = -4554.853454 eV No. of doubly occupied orbitals = 68 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 364.181 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.95159 -41.68772 -40.45207 -39.21321 -38.92527 -37.67919 -37.20528 -35.35614 -33.04213 -32.59568 -31.85597 -31.84466 -30.62446 -28.50104 -26.14477 -26.00067 -24.79639 -23.86737 -23.62999 -22.61400 -21.84545 -21.48026 -20.82493 -19.49988 -18.75857 -18.42005 -18.12588 -17.71718 -17.66065 -17.32843 -16.86849 -16.72999 -16.18862 -16.08929 -15.91211 -15.82336 -15.51554 -15.20927 -14.95957 -14.78940 -14.61521 -14.51411 -14.47261 -14.09068 -13.83555 -13.59076 -13.48047 -13.39489 -13.24884 -13.09456 -12.95645 -12.76422 -12.53296 -12.44400 -12.37085 -12.21186 -12.19003 -12.03348 -11.65170 -11.62546 -11.54645 -11.46231 -11.35286 -10.96738 -10.52394 -10.25344 -10.00325 -9.28513 -4.88049 -0.24422 0.23385 1.08111 1.35162 1.61550 1.62205 1.79846 2.00482 2.10029 2.28216 2.69860 3.42567 3.46034 3.51692 3.60247 3.63312 3.68112 3.75313 3.91174 3.96011 4.00598 4.02331 4.07839 4.13585 4.19359 4.28466 4.30131 4.31015 4.32559 4.35880 4.41338 4.42107 4.61609 4.64958 4.69420 4.74285 4.74995 4.81614 4.87360 4.91349 4.95827 5.02785 5.06838 5.08405 5.12876 5.13645 5.24583 5.28502 5.30015 5.42264 5.51207 5.58587 6.31456 6.53811 6.55606 6.64376 7.25360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.053 3.947 3 O -0.360 6.360 4 C 0.464 3.536 5 O -0.540 6.540 6 C -0.074 4.074 7 H 0.137 0.863 8 C -0.101 4.101 9 C -0.119 4.119 10 C 0.144 3.856 11 H 0.063 0.937 12 N -0.712 5.712 13 C 0.557 3.443 14 O -0.564 6.564 15 C -0.197 4.197 16 C 0.170 3.830 17 O -0.313 6.313 18 C 0.011 3.989 19 C -0.213 4.213 20 C -0.045 4.045 21 C -0.164 4.164 22 C -0.071 4.071 23 O -0.546 6.546 24 Si 0.758 3.242 25 C -0.014 4.014 26 C -0.114 4.114 27 C -0.098 4.098 28 H 0.067 0.933 29 H 0.070 0.930 30 H 0.096 0.904 31 H 0.069 0.931 32 H 0.064 0.936 33 H 0.086 0.914 34 H 0.056 0.944 35 H 0.052 0.948 36 H 0.089 0.911 37 H 0.413 0.587 38 H 0.071 0.929 39 H 0.106 0.894 40 H 0.074 0.926 41 H 0.160 0.840 42 H 0.155 0.845 43 H 0.132 0.868 44 H 0.386 0.614 45 H -0.306 1.306 46 H -0.281 1.281 47 H 0.154 0.846 48 H 0.098 0.902 49 H 0.084 0.916 50 H 0.081 0.919 51 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.141 5.270 -1.662 5.642 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.020 4.020 3 O -0.277 6.277 4 C 0.308 3.692 5 O -0.430 6.430 6 C -0.093 4.093 7 H 0.155 0.845 8 C -0.140 4.140 9 C -0.158 4.158 10 C 0.040 3.960 11 H 0.082 0.918 12 N -0.365 5.365 13 C 0.346 3.654 14 O -0.444 6.444 15 C -0.200 4.200 16 C 0.122 3.878 17 O -0.225 6.225 18 C -0.083 4.083 19 C -0.232 4.232 20 C -0.062 4.062 21 C -0.165 4.165 22 C -0.180 4.180 23 O -0.354 6.354 24 Si 0.665 3.335 25 C -0.033 4.033 26 C -0.151 4.151 27 C -0.136 4.136 28 H 0.086 0.914 29 H 0.089 0.911 30 H 0.114 0.886 31 H 0.087 0.913 32 H 0.083 0.917 33 H 0.105 0.895 34 H 0.075 0.925 35 H 0.071 0.929 36 H 0.108 0.892 37 H 0.251 0.749 38 H 0.090 0.910 39 H 0.125 0.875 40 H 0.093 0.907 41 H 0.178 0.822 42 H 0.172 0.828 43 H 0.150 0.850 44 H 0.235 0.765 45 H -0.235 1.235 46 H -0.207 1.207 47 H 0.171 0.829 48 H 0.117 0.883 49 H 0.103 0.897 50 H 0.099 0.901 51 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 1.307 4.838 -1.372 5.195 hybrid contribution -1.066 -0.048 -0.054 1.069 sum 0.240 4.790 -1.426 5.004 Atomic orbital electron populations 1.21822 0.90669 1.04253 1.03742 1.23244 0.96944 0.79447 1.02394 1.86518 1.24322 1.33379 1.83470 1.24325 0.80540 0.93317 0.70982 1.90669 1.61118 1.44462 1.46763 1.21258 0.96638 0.88270 1.03128 0.84486 1.21419 1.01918 0.95120 0.95516 1.21834 0.94595 0.96265 1.03093 1.21003 0.93264 0.82108 0.99644 0.91839 1.45838 1.64946 1.16829 1.08864 1.18293 0.77687 0.85599 0.83839 1.90815 1.51665 1.69280 1.32591 1.19439 1.12009 0.95772 0.92824 1.19436 0.91105 0.91523 0.85739 1.86337 1.78414 1.43975 1.13744 1.23435 1.02799 0.97325 0.84711 1.21450 1.06195 0.94407 1.01132 1.21306 0.94129 0.99718 0.91094 1.20163 1.04917 0.95650 0.95742 1.25074 0.91866 1.10312 0.90772 1.86578 1.30459 1.72162 1.46201 0.94169 0.85699 0.73808 0.79868 1.21133 0.92195 0.94022 0.95928 1.21760 1.01822 0.94352 0.97216 1.21366 0.91482 0.97208 1.03571 0.91375 0.91093 0.88579 0.91290 0.91707 0.89498 0.92523 0.92871 0.89204 0.74945 0.91031 0.87547 0.90716 0.82235 0.82818 0.85038 0.76457 1.23451 1.20728 0.82886 0.88320 0.89747 0.90062 0.92338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.36 10.29 71.98 0.74 1.10 16 2 C 0.05 0.13 6.19 71.98 0.45 0.57 16 3 O -0.36 -1.71 10.12 -51.39 -0.52 -2.23 16 4 C 0.46 2.67 7.26 71.24 0.52 3.19 16 5 O -0.54 -6.57 15.73 21.95 0.35 -6.22 16 6 C -0.07 0.06 2.63 -11.54 -0.03 0.03 16 7 H 0.14 -0.78 8.14 -2.39 -0.02 -0.80 16 8 C -0.10 0.00 5.13 30.60 0.16 0.16 16 9 C -0.12 0.00 5.49 30.60 0.17 0.17 16 10 C 0.14 0.09 2.45 44.99 0.11 0.20 16 11 H 0.06 0.43 7.58 -2.39 -0.02 0.41 16 12 N -0.71 -0.23 5.03 -445.71 -2.24 -2.47 16 13 C 0.56 4.43 7.73 86.70 0.67 5.10 16 14 O -0.56 -9.59 14.82 16.92 0.25 -9.34 16 15 C -0.20 -0.85 5.89 -20.01 -0.12 -0.97 16 16 C 0.17 0.84 6.70 22.84 0.15 0.99 16 17 O -0.31 -2.62 8.57 -68.74 -0.59 -3.21 16 18 C 0.01 -0.01 9.81 113.37 1.11 1.10 16 19 C -0.21 0.35 9.03 22.34 0.20 0.55 16 20 C -0.04 0.20 8.65 22.30 0.19 0.39 16 21 C -0.16 0.62 5.35 -19.89 -0.11 0.51 16 22 C -0.07 0.37 2.79 71.24 0.20 0.57 16 23 O -0.55 1.23 12.83 -148.98 -1.91 -0.68 16 24 Si 0.76 -4.13 29.87 68.60 2.05 -2.08 16 25 C -0.01 0.03 9.16 22.52 0.21 0.23 16 26 C -0.11 0.51 5.39 30.61 0.17 0.68 16 27 C -0.10 0.07 4.50 30.61 0.14 0.21 16 28 H 0.07 -0.15 8.14 -2.38 -0.02 -0.17 16 29 H 0.07 -0.20 8.14 -2.39 -0.02 -0.22 16 30 H 0.10 -0.52 8.14 -2.39 -0.02 -0.54 16 31 H 0.07 0.17 8.13 -2.39 -0.02 0.15 16 32 H 0.06 0.21 8.13 -2.39 -0.02 0.19 16 33 H 0.09 -0.07 8.11 -2.39 -0.02 -0.09 16 34 H 0.06 0.19 8.14 -2.39 -0.02 0.17 16 35 H 0.05 0.28 8.14 -2.39 -0.02 0.27 16 36 H 0.09 -0.35 8.14 -2.39 -0.02 -0.37 16 37 H 0.41 -2.47 6.63 -92.71 -0.61 -3.09 16 38 H 0.07 -0.33 7.66 -2.39 -0.02 -0.35 16 39 H 0.11 -0.25 8.14 -2.39 -0.02 -0.27 16 40 H 0.07 -0.37 7.66 -2.39 -0.02 -0.39 16 41 H 0.16 -1.03 6.30 -2.91 -0.02 -1.05 16 42 H 0.15 -1.36 4.81 -2.91 -0.01 -1.38 16 43 H 0.13 -0.99 7.96 -2.39 -0.02 -1.01 16 44 H 0.39 -2.75 8.70 -74.06 -0.64 -3.40 16 45 H -0.31 -0.97 7.11 99.48 0.71 -0.26 16 46 H -0.28 0.56 7.00 99.48 0.70 1.25 16 47 H 0.15 -1.01 6.40 -2.91 -0.02 -1.03 16 48 H 0.10 -0.88 8.14 -2.39 -0.02 -0.90 16 49 H 0.08 -0.42 8.14 -2.39 -0.02 -0.44 16 50 H 0.08 -0.05 8.10 -2.39 -0.02 -0.07 16 51 H 0.06 0.19 8.10 -2.39 -0.02 0.17 16 Total: 0.00 -26.68 411.23 2.03 -24.64 By element: Atomic # 1 Polarization: -12.92 SS G_CDS: -0.27 Total: -13.19 kcal Atomic # 6 Polarization: 9.87 SS G_CDS: 4.92 Total: 14.79 kcal Atomic # 7 Polarization: -0.23 SS G_CDS: -2.24 Total: -2.47 kcal Atomic # 8 Polarization: -19.27 SS G_CDS: -2.42 Total: -21.69 kcal Atomic # 14 Polarization: -4.13 SS G_CDS: 2.05 Total: -2.08 kcal Total: -26.68 2.03 -24.64 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14589458_12496546.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -144.003 kcal (2) G-P(sol) polarization free energy of solvation -26.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -170.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.644 kcal (6) G-S(sol) free energy of system = (1) + (5) -168.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds