Wall clock time and date at job start Sun Mar 7 2021 02:28:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 O 1.45202 * 109.47231 * 2 1 4 4 C 1.34226 * 117.00177 * 179.97438 * 3 2 1 5 5 O 1.20829 * 119.99889 * 0.02562 * 4 3 2 6 6 C 1.50699 * 119.99810 * 179.97438 * 4 3 2 7 7 H 1.09005 * 109.47061 * 60.00298 * 6 4 3 8 8 C 1.53001 * 109.47021 * 179.97438 * 6 4 3 9 9 C 1.53000 * 109.47204 * 180.02562 * 8 6 4 10 10 C 1.52997 * 109.47019 * 299.99938 * 9 8 6 11 11 H 1.08997 * 109.47328 * 299.99863 * 10 9 8 12 12 N 1.46504 * 109.46901 * 179.97438 * 10 9 8 13 13 C 1.34778 * 119.99944 * 155.00742 * 12 10 9 14 14 O 1.21629 * 119.99912 * 359.97438 * 13 12 10 15 15 C 1.47292 * 120.00049 * 179.97438 * 13 12 10 16 16 C 1.40372 * 120.04242 * 179.97438 * 15 13 12 17 17 O 1.35675 * 120.14100 * 359.97438 * 16 15 13 18 18 C 1.38321 * 119.71855 * 180.25484 * 16 15 13 19 19 C 1.39561 * 119.81525 * 359.45413 * 18 16 15 20 20 C 1.47573 * 119.95762 * 180.25298 * 19 18 16 21 21 C 1.36102 * 125.94629 * 180.26805 * 20 19 18 22 22 C 1.40802 * 106.73458 * 180.02562 * 21 20 19 23 23 C 1.34829 * 107.04739 * 0.02562 * 22 21 20 24 24 C 1.50700 * 125.65454 * 180.02562 * 23 22 21 25 25 O 1.42901 * 109.47339 * 64.99880 * 24 23 22 26 26 Si 1.86302 * 109.47368 * 185.00203 * 24 23 22 27 27 O 1.34238 * 108.69525 * 359.73436 * 23 22 21 28 28 C 1.39964 * 120.08776 * 0.52590 * 19 18 16 29 29 C 1.36381 * 120.28085 * 359.77537 * 28 19 18 30 30 C 1.52998 * 109.46880 * 60.00308 * 10 9 8 31 31 C 1.52991 * 109.47486 * 299.99960 * 6 4 3 32 32 H 1.08996 * 109.47181 * 59.99792 * 1 2 3 33 33 H 1.09000 * 109.47176 * 179.97438 * 1 2 3 34 34 H 1.09007 * 109.47416 * 299.99573 * 1 2 3 35 35 H 1.09006 * 109.47267 * 239.99896 * 2 1 3 36 36 H 1.09002 * 109.47215 * 119.99763 * 2 1 3 37 37 H 1.09005 * 109.46852 * 60.00301 * 8 6 4 38 38 H 1.09000 * 109.47595 * 300.00011 * 8 6 4 39 39 H 1.09006 * 109.47061 * 180.02562 * 9 8 6 40 40 H 1.08997 * 109.46959 * 60.00027 * 9 8 6 41 41 H 0.96995 * 120.00331 * 335.00080 * 12 10 9 42 42 H 0.96701 * 113.99703 * 90.00425 * 17 16 15 43 43 H 1.08004 * 120.08654 * 179.71918 * 18 16 15 44 44 H 1.08001 * 126.63044 * 0.04232 * 21 20 19 45 45 H 1.07995 * 126.47551 * 180.02562 * 22 21 20 46 46 H 1.09010 * 109.46806 * 305.00084 * 24 23 22 47 47 H 0.96698 * 113.99877 * 180.02562 * 25 24 23 48 48 H 1.48494 * 109.99782 * 299.99628 * 26 24 23 49 49 H 1.48498 * 109.99838 * 61.31776 * 26 24 23 50 50 H 1.08010 * 119.85731 * 179.74795 * 28 19 18 51 51 H 1.07998 * 119.90736 * 179.97438 * 29 28 19 52 52 H 1.08997 * 109.47503 * 59.99663 * 30 10 9 53 53 H 1.09007 * 109.47118 * 179.97438 * 30 10 9 54 54 H 1.09000 * 109.47572 * 300.00540 * 31 6 4 55 55 H 1.09006 * 109.47377 * 60.00180 * 31 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3446 1.5448 0.0005 5 8 4.0807 0.5866 0.0005 6 6 3.9206 2.9374 0.0000 7 1 3.5842 3.4701 0.8896 8 6 5.4485 2.8574 0.0014 9 6 6.0333 4.2712 0.0015 10 6 5.5629 5.0178 -1.2484 11 1 5.8996 4.4854 -2.1379 12 7 6.1223 6.3718 -1.2480 13 6 6.2868 7.0333 -2.4107 14 8 5.9713 6.5060 -3.4603 15 6 6.8488 8.3948 -2.4102 16 6 7.0210 9.0844 -3.6207 17 8 6.6712 8.4993 -4.7938 18 6 7.5543 10.3606 -3.6130 19 6 7.9066 10.9581 -2.4019 20 6 8.4705 12.3218 -2.3896 21 6 8.8590 13.0158 -1.2851 22 6 9.3316 14.2632 -1.7355 23 6 9.2097 14.2707 -3.0782 24 6 9.5947 15.4081 -3.9889 25 8 11.0085 15.6076 -3.9304 26 14 9.0970 14.9997 -5.7371 27 8 8.6945 13.0947 -3.4701 28 6 7.7310 10.2636 -1.1995 29 6 7.2113 9.0027 -1.2033 30 6 4.0350 5.0978 -1.2497 31 6 3.4497 3.6837 -1.2498 32 1 -0.3633 0.5138 -0.8899 33 1 -0.3633 -1.0277 -0.0005 34 1 -0.3634 0.5138 0.8901 35 1 1.8933 -0.5139 -0.8900 36 1 1.8933 -0.5138 0.8900 37 1 5.7852 2.3246 -0.8879 38 1 5.7837 2.3260 0.8921 39 1 7.1218 4.2142 0.0021 40 1 5.6965 4.8036 0.8910 41 1 6.3743 6.7922 -0.4110 42 1 5.7561 8.6653 -5.0585 43 1 7.6936 10.8949 -4.5412 44 1 8.8137 12.6752 -0.2611 45 1 9.7186 15.0629 -1.1215 46 1 9.0858 16.3176 -3.6693 47 1 11.3278 16.3263 -4.4930 48 1 9.7840 13.7616 -6.1847 49 1 7.6250 14.8212 -5.8176 50 1 8.0087 10.7280 -0.2648 51 1 7.0789 8.4721 -0.2720 52 1 3.6982 5.6302 -0.3603 53 1 3.6998 5.6301 -2.1400 54 1 3.7860 3.1511 -2.1394 55 1 2.3611 3.7407 -1.2504 There are 77 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 77 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14589458_12807986.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 02:28:52 Heat of formation + Delta-G solvation = -157.217605 kcal Electronic energy + Delta-G solvation = -38745.563442 eV Core-core repulsion = 33487.844976 eV Total energy + Delta-G solvation = -5257.718466 eV No. of doubly occupied orbitals = 77 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 416.181 amu Computer time = 1.57 seconds Orbital eigenvalues (eV) -43.87382 -41.94819 -41.59968 -40.20603 -38.87774 -38.10366 -37.83301 -37.67343 -35.43339 -34.38903 -33.63783 -32.73521 -31.84964 -31.55249 -31.08366 -30.22208 -27.15697 -25.62360 -24.43911 -24.15070 -23.84723 -23.60225 -22.57301 -22.08214 -21.76801 -21.38009 -20.92637 -19.77945 -18.87122 -18.69553 -18.67105 -18.10361 -17.75660 -17.66777 -17.45812 -17.18681 -16.65331 -16.49269 -16.30819 -16.07388 -15.89123 -15.71691 -15.42122 -15.15017 -14.99514 -14.81474 -14.56443 -14.52193 -14.36596 -14.21734 -14.08829 -14.00511 -13.84353 -13.66082 -13.61510 -13.46712 -13.26878 -12.96353 -12.84399 -12.75731 -12.73897 -12.53855 -12.41103 -12.27516 -12.20883 -11.98131 -11.63866 -11.55235 -11.47309 -11.35853 -11.24172 -10.93067 -10.78841 -10.46115 -10.13735 -10.04911 -9.11277 -5.15657 -0.88822 0.04196 0.52669 1.07796 1.11472 1.31048 1.50098 1.58112 1.61124 1.85829 1.95678 2.00084 2.56232 2.91086 3.19864 3.43055 3.49795 3.50696 3.60565 3.65923 3.69549 3.72526 3.89483 3.90109 3.91166 3.95313 4.01640 4.06465 4.10761 4.16819 4.26566 4.28064 4.30006 4.30905 4.35630 4.41649 4.54695 4.57489 4.61162 4.70186 4.74479 4.80025 4.81338 4.86958 4.91251 4.97576 5.01026 5.02873 5.07010 5.08660 5.12042 5.13476 5.23984 5.27125 5.35063 5.41061 5.44305 5.48189 5.85842 6.46894 6.59337 6.63947 6.80763 7.15645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.053 3.947 3 O -0.360 6.360 4 C 0.463 3.537 5 O -0.542 6.542 6 C -0.073 4.073 7 H 0.140 0.860 8 C -0.099 4.099 9 C -0.114 4.114 10 C 0.143 3.857 11 H 0.061 0.939 12 N -0.705 5.705 13 C 0.557 3.443 14 O -0.563 6.563 15 C -0.176 4.176 16 C 0.160 3.840 17 O -0.496 6.496 18 C -0.162 4.162 19 C 0.022 3.978 20 C -0.006 4.006 21 C -0.166 4.166 22 C -0.174 4.174 23 C -0.032 4.032 24 C -0.034 4.034 25 O -0.559 6.559 26 Si 0.798 3.202 27 O -0.198 6.198 28 C -0.107 4.107 29 C -0.046 4.046 30 C -0.119 4.119 31 C -0.103 4.103 32 H 0.067 0.933 33 H 0.095 0.905 34 H 0.071 0.929 35 H 0.063 0.937 36 H 0.069 0.931 37 H 0.055 0.945 38 H 0.081 0.919 39 H 0.083 0.917 40 H 0.104 0.896 41 H 0.416 0.584 42 H 0.408 0.592 43 H 0.121 0.879 44 H 0.192 0.808 45 H 0.177 0.823 46 H 0.130 0.870 47 H 0.414 0.586 48 H -0.313 1.313 49 H -0.295 1.295 50 H 0.175 0.825 51 H 0.181 0.819 52 H 0.095 0.905 53 H 0.055 0.945 54 H 0.053 0.947 55 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.272 8.402 7.288 11.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.020 4.020 3 O -0.276 6.276 4 C 0.307 3.693 5 O -0.432 6.432 6 C -0.092 4.092 7 H 0.158 0.842 8 C -0.138 4.138 9 C -0.151 4.151 10 C 0.038 3.962 11 H 0.079 0.921 12 N -0.358 5.358 13 C 0.345 3.655 14 O -0.442 6.442 15 C -0.180 4.180 16 C 0.114 3.886 17 O -0.309 6.309 18 C -0.181 4.181 19 C 0.021 3.979 20 C -0.054 4.054 21 C -0.184 4.184 22 C -0.193 4.193 23 C -0.081 4.081 24 C -0.144 4.144 25 O -0.371 6.371 26 Si 0.705 3.295 27 O -0.097 6.097 28 C -0.124 4.124 29 C -0.064 4.064 30 C -0.157 4.157 31 C -0.141 4.141 32 H 0.086 0.914 33 H 0.114 0.886 34 H 0.090 0.910 35 H 0.082 0.918 36 H 0.087 0.913 37 H 0.074 0.926 38 H 0.099 0.901 39 H 0.101 0.899 40 H 0.122 0.878 41 H 0.255 0.745 42 H 0.268 0.732 43 H 0.140 0.860 44 H 0.209 0.791 45 H 0.195 0.805 46 H 0.148 0.852 47 H 0.267 0.733 48 H -0.242 1.242 49 H -0.222 1.222 50 H 0.192 0.808 51 H 0.198 0.802 52 H 0.113 0.887 53 H 0.074 0.926 54 H 0.072 0.928 55 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -2.222 6.359 6.128 9.106 hybrid contribution -0.285 -0.395 0.031 0.488 sum -2.508 5.964 6.158 8.932 Atomic orbital electron populations 1.21820 0.90647 1.04235 1.03775 1.23236 0.96951 0.79476 1.02345 1.86514 1.24333 1.33329 1.83467 1.24378 0.80532 0.93410 0.70961 1.90672 1.61152 1.44540 1.46794 1.21261 0.96527 0.88184 1.03247 0.84205 1.21365 0.91583 0.97355 1.03466 1.21754 1.01770 0.94292 0.97323 1.21039 0.93480 0.81977 0.99692 0.92058 1.45790 1.64486 1.16777 1.08772 1.18158 0.77842 0.85405 0.84080 1.90831 1.51577 1.69173 1.32649 1.20551 1.07208 0.95736 0.94468 1.18470 0.95296 0.89549 0.85295 1.84729 1.35515 1.74712 1.35932 1.21484 1.03218 0.94790 0.98602 1.18016 0.96873 0.88592 0.94371 1.20770 1.07066 0.92658 0.84945 1.22329 1.01931 0.93981 1.00197 1.21912 1.03877 1.00022 0.93450 1.22226 1.03765 0.86502 0.95606 1.23898 0.87187 0.95301 1.08029 1.86414 1.18540 1.60344 1.71833 0.94487 0.76507 0.82667 0.75820 1.83957 1.64974 1.24400 1.36406 1.21096 0.99538 0.94516 0.97277 1.21246 0.93779 0.94222 0.97162 1.21846 0.94242 0.96189 1.03444 1.21436 1.01990 0.95275 0.95404 0.91368 0.88650 0.91018 0.91809 0.91307 0.92633 0.90085 0.89870 0.87774 0.74471 0.73178 0.86047 0.79123 0.80513 0.85213 0.73307 1.24195 1.22227 0.80777 0.80189 0.88688 0.92627 0.92768 0.89411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.45 10.29 71.98 0.74 1.19 16 2 C 0.05 0.10 6.19 71.98 0.45 0.54 16 3 O -0.36 -1.40 10.12 -51.37 -0.52 -1.92 16 4 C 0.46 2.24 7.26 71.24 0.52 2.76 16 5 O -0.54 -6.28 15.73 21.96 0.35 -5.93 16 6 C -0.07 0.17 2.63 -11.54 -0.03 0.14 16 7 H 0.14 -1.08 8.14 -2.38 -0.02 -1.10 16 8 C -0.10 0.21 4.49 30.59 0.14 0.34 16 9 C -0.11 0.76 5.39 30.59 0.16 0.92 16 10 C 0.14 -0.25 2.46 44.99 0.11 -0.14 16 11 H 0.06 0.32 7.58 -2.39 -0.02 0.30 16 12 N -0.71 2.09 5.03 -445.92 -2.24 -0.15 16 13 C 0.56 3.00 7.72 86.62 0.67 3.67 16 14 O -0.56 -8.16 14.80 16.87 0.25 -7.91 16 15 C -0.18 -0.57 5.89 -19.97 -0.12 -0.68 16 16 C 0.16 1.26 6.71 22.81 0.15 1.42 16 17 O -0.50 -5.19 11.56 -68.92 -0.80 -5.99 16 18 C -0.16 -1.25 9.65 22.61 0.22 -1.03 16 19 C 0.02 0.09 5.87 -20.08 -0.12 -0.03 16 20 C -0.01 -0.03 7.02 24.24 0.17 0.14 16 21 C -0.17 -0.19 10.26 22.40 0.23 0.04 16 22 C -0.17 -0.44 10.78 22.11 0.24 -0.20 16 23 C -0.03 -0.19 6.24 24.90 0.16 -0.03 16 24 C -0.03 0.04 2.97 71.24 0.21 0.25 16 25 O -0.56 0.98 12.86 -148.98 -1.92 -0.94 16 26 Si 0.80 -0.04 32.11 68.60 2.20 2.16 16 27 O -0.20 -2.05 8.79 -6.03 -0.05 -2.10 16 28 C -0.11 0.39 9.48 22.25 0.21 0.60 16 29 C -0.05 0.22 9.47 22.24 0.21 0.43 16 30 C -0.12 0.33 5.49 30.61 0.17 0.50 16 31 C -0.10 0.18 5.14 30.61 0.16 0.33 16 32 H 0.07 -0.19 8.14 -2.39 -0.02 -0.21 16 33 H 0.09 -0.55 8.14 -2.39 -0.02 -0.57 16 34 H 0.07 -0.25 8.14 -2.38 -0.02 -0.27 16 35 H 0.06 0.19 8.13 -2.38 -0.02 0.17 16 36 H 0.07 0.13 8.13 -2.39 -0.02 0.12 16 37 H 0.05 0.14 8.10 -2.38 -0.02 0.12 16 38 H 0.08 -0.14 8.10 -2.39 -0.02 -0.16 16 39 H 0.08 -0.56 8.14 -2.38 -0.02 -0.58 16 40 H 0.10 -1.25 8.14 -2.39 -0.02 -1.27 16 41 H 0.42 -4.45 6.61 -92.71 -0.61 -5.06 16 42 H 0.41 1.25 9.06 -74.06 -0.67 0.58 16 43 H 0.12 1.21 7.90 -2.91 -0.02 1.19 16 44 H 0.19 -1.28 7.24 -2.91 -0.02 -1.30 16 45 H 0.18 -0.40 8.06 -2.91 -0.02 -0.42 16 46 H 0.13 -1.04 7.96 -2.38 -0.02 -1.06 16 47 H 0.41 -5.50 8.74 -74.06 -0.65 -6.15 16 48 H -0.31 -3.33 7.11 99.48 0.71 -2.62 16 49 H -0.29 -1.96 7.11 99.48 0.71 -1.25 16 50 H 0.17 -1.88 6.95 -2.91 -0.02 -1.90 16 51 H 0.18 -2.53 6.38 -2.91 -0.02 -2.55 16 52 H 0.09 -0.70 8.14 -2.39 -0.02 -0.72 16 53 H 0.05 0.12 8.14 -2.38 -0.02 0.10 16 54 H 0.05 0.11 8.14 -2.39 -0.02 0.09 16 55 H 0.09 -0.22 8.11 -2.38 -0.02 -0.24 16 Total: 0.00 -37.36 456.94 0.98 -36.38 By element: Atomic # 1 Polarization: -23.82 SS G_CDS: -0.93 Total: -24.75 kcal Atomic # 6 Polarization: 6.50 SS G_CDS: 4.64 Total: 11.14 kcal Atomic # 7 Polarization: 2.09 SS G_CDS: -2.24 Total: -0.15 kcal Atomic # 8 Polarization: -22.09 SS G_CDS: -2.69 Total: -24.78 kcal Atomic # 14 Polarization: -0.04 SS G_CDS: 2.20 Total: 2.16 kcal Total: -37.36 0.98 -36.38 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14589458_12807986.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -120.835 kcal (2) G-P(sol) polarization free energy of solvation -37.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.383 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.57 seconds