Wall clock time and date at job start Sun Mar 7 2021 02:29:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.45205 * 109.47038 * 2 1 4 4 C 1.34225 * 116.99943 * 179.97438 * 3 2 1 5 5 O 1.20825 * 120.00047 * 0.02562 * 4 3 2 6 6 C 1.50698 * 119.99990 * 179.97438 * 4 3 2 7 7 H 1.08993 * 109.47304 * 299.99904 * 6 4 3 8 8 C 1.52999 * 109.46824 * 60.00712 * 6 4 3 9 9 C 1.52997 * 109.46991 * 179.97438 * 8 6 4 10 10 C 1.52996 * 109.47131 * 299.99311 * 9 8 6 11 11 H 1.08996 * 109.47452 * 300.00000 * 10 9 8 12 12 N 1.46507 * 109.47258 * 179.97438 * 10 9 8 13 13 C 1.34778 * 119.99609 * 85.00044 * 12 10 9 14 14 O 1.21640 * 120.00134 * 0.02562 * 13 12 10 15 15 C 1.47057 * 119.99734 * 179.97438 * 13 12 10 16 16 C 1.35865 * 125.42775 * 179.69257 * 15 13 12 17 17 C 1.41588 * 107.72924 * 179.84901 * 16 15 13 18 18 C 1.40071 * 133.38155 * 180.11620 * 17 16 15 19 19 C 1.36467 * 119.83044 * 180.32821 * 18 17 16 20 20 C 1.38903 * 120.61631 * 0.02562 * 19 18 17 21 21 C 1.50698 * 119.67734 * 180.02562 * 20 19 18 22 22 O 1.42902 * 109.47438 * 119.99766 * 21 20 19 23 23 Si 1.86306 * 109.47058 * 359.97438 * 21 20 19 24 24 C 1.37710 * 120.64854 * 359.97438 * 20 19 18 25 25 C 1.39184 * 119.80708 * 0.02562 * 24 20 19 26 26 N 1.37490 * 133.18639 * 180.02562 * 25 24 20 27 27 C 1.53002 * 109.46972 * 60.00459 * 10 9 8 28 28 C 1.52997 * 109.46817 * 299.99733 * 27 10 9 29 29 H 1.08996 * 109.47599 * 59.99878 * 1 2 3 30 30 H 1.08999 * 109.47398 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47413 * 299.99806 * 1 2 3 32 32 H 1.09004 * 109.46731 * 240.00228 * 2 1 3 33 33 H 1.08993 * 109.47109 * 120.00089 * 2 1 3 34 34 H 1.09002 * 109.46719 * 299.99679 * 8 6 4 35 35 H 1.08993 * 109.47839 * 59.99520 * 8 6 4 36 36 H 1.09001 * 109.47289 * 179.97438 * 9 8 6 37 37 H 1.09000 * 109.47611 * 59.99933 * 9 8 6 38 38 H 0.97001 * 120.00071 * 265.00501 * 12 10 9 39 39 H 1.08007 * 126.13175 * 0.02562 * 16 15 13 40 40 H 1.08002 * 120.08402 * 0.30827 * 18 17 16 41 41 H 1.08001 * 119.69228 * 179.97438 * 19 18 17 42 42 H 1.09002 * 109.47430 * 240.00091 * 21 20 19 43 43 H 0.96695 * 114.00838 * 180.02562 * 22 21 20 44 44 H 1.48501 * 109.99925 * 298.67995 * 23 21 20 45 45 H 1.48502 * 110.00039 * 60.00236 * 23 21 20 46 46 H 1.07999 * 120.09526 * 180.02562 * 24 20 19 47 47 H 0.96996 * 125.60348 * 0.02562 * 26 25 24 48 48 H 1.09002 * 109.47070 * 179.97438 * 27 10 9 49 49 H 1.08996 * 109.47407 * 59.99513 * 27 10 9 50 50 H 1.09001 * 109.47502 * 300.00518 * 28 27 10 51 51 H 1.09001 * 109.47289 * 180.02562 * 28 27 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5449 0.0005 5 8 4.0807 0.5867 0.0005 6 6 3.9206 2.9374 0.0000 7 1 3.5852 3.4691 -0.8904 8 6 3.4486 3.6850 1.2487 9 6 4.0339 5.0986 1.2485 10 6 5.5617 5.0180 1.2496 11 1 5.8969 4.4862 2.1400 12 7 6.1222 6.3716 1.2488 13 6 6.2852 7.0341 2.4111 14 8 5.9674 6.5080 3.4608 15 6 6.8483 8.3926 2.4104 16 6 7.0542 9.1604 3.5122 17 6 7.6112 10.3895 3.0833 18 6 8.0255 11.5452 3.7575 19 6 8.5298 12.5988 3.0517 20 6 8.6365 12.5372 1.6682 21 6 9.1971 13.7128 0.9100 22 8 10.3644 13.3049 0.1938 23 14 9.6445 15.0679 2.1077 24 6 8.2359 11.4121 0.9826 25 6 7.7183 10.3245 1.6801 26 7 7.2463 9.0939 1.2887 27 6 6.0339 4.2705 0.0009 28 6 5.4486 2.8568 0.0011 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.8933 -0.5138 -0.8901 33 1 1.8933 -0.5138 0.8899 34 1 2.3601 3.7420 1.2481 35 1 3.7841 3.1534 2.1391 36 1 3.6972 5.6314 2.1378 37 1 3.6987 5.6306 0.3581 38 1 6.3759 6.7910 0.4117 39 1 6.8353 8.8818 4.5325 40 1 7.9458 11.6026 4.8330 41 1 8.8483 13.4890 3.5737 42 1 8.4500 14.0816 0.2072 43 1 10.7794 14.0127 -0.3179 44 1 8.4328 15.5229 2.8356 45 1 10.6623 14.5781 3.0717 46 1 8.3232 11.3737 -0.0932 47 1 7.2009 8.7710 0.3752 48 1 7.1224 4.2134 0.0014 49 1 5.6987 4.8023 -0.8895 50 1 5.7837 2.3249 0.8915 51 1 5.7853 2.3240 -0.8882 There are 69 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 69 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14589458_13158378.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 02:29:08 Heat of formation + Delta-G solvation = -102.797727 kcal Electronic energy + Delta-G solvation = -32848.272388 eV Core-core repulsion = 28293.078359 eV Total energy + Delta-G solvation = -4555.194029 eV No. of doubly occupied orbitals = 69 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 373.177 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -42.81586 -41.88727 -40.92618 -39.27743 -38.76174 -37.71247 -37.00343 -35.55815 -33.44087 -32.80921 -31.88581 -31.75828 -30.63259 -30.52452 -27.10992 -25.59115 -24.42008 -23.89032 -23.67857 -23.02931 -22.09243 -21.89368 -21.41356 -20.83727 -19.61044 -18.76365 -18.37495 -18.04166 -17.78714 -17.68684 -17.41659 -17.09421 -16.58308 -16.45789 -15.90107 -15.45829 -15.43559 -15.19053 -15.12939 -14.94952 -14.82707 -14.79664 -14.55869 -14.42942 -14.17530 -14.05150 -13.84447 -13.53289 -13.43371 -13.30768 -12.97264 -12.84758 -12.78182 -12.55392 -12.44982 -12.34949 -12.24017 -12.23557 -11.88202 -11.67035 -11.57274 -11.56389 -11.49526 -11.24913 -11.06184 -10.32625 -10.24895 -9.45371 -8.93005 -4.89725 -0.47352 0.35027 0.85557 1.06821 1.33610 1.58756 1.67445 1.69010 1.90226 2.03829 2.11174 2.61191 3.37923 3.42288 3.45786 3.52872 3.57083 3.63395 3.82846 3.85820 3.86966 3.94524 4.00385 4.02658 4.11907 4.14159 4.21242 4.24323 4.27463 4.29344 4.32633 4.36628 4.38660 4.54116 4.57595 4.71627 4.77200 4.79986 4.85681 4.86559 4.88216 5.00035 5.04338 5.05899 5.12284 5.13104 5.18906 5.21410 5.24421 5.34831 5.39300 5.42919 5.45161 5.83315 6.20450 6.38633 6.62949 6.91586 6.94622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.053 3.947 3 O -0.360 6.360 4 C 0.463 3.537 5 O -0.541 6.541 6 C -0.074 4.074 7 H 0.138 0.862 8 C -0.103 4.103 9 C -0.121 4.121 10 C 0.142 3.858 11 H 0.070 0.930 12 N -0.705 5.705 13 C 0.588 3.412 14 O -0.557 6.557 15 C 0.018 3.982 16 C -0.121 4.121 17 C -0.137 4.137 18 C -0.061 4.061 19 C -0.167 4.167 20 C -0.063 4.063 21 C -0.073 4.073 22 O -0.563 6.563 23 Si 0.771 3.229 24 C -0.100 4.100 25 C 0.111 3.889 26 N -0.558 5.558 27 C -0.114 4.114 28 C -0.099 4.099 29 H 0.070 0.930 30 H 0.095 0.905 31 H 0.068 0.932 32 H 0.068 0.932 33 H 0.064 0.936 34 H 0.087 0.913 35 H 0.057 0.943 36 H 0.058 0.942 37 H 0.092 0.908 38 H 0.413 0.587 39 H 0.155 0.845 40 H 0.141 0.859 41 H 0.119 0.881 42 H 0.101 0.899 43 H 0.404 0.596 44 H -0.289 1.289 45 H -0.301 1.301 46 H 0.149 0.851 47 H 0.435 0.565 48 H 0.084 0.916 49 H 0.101 0.899 50 H 0.058 0.942 51 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.440 5.227 -8.376 9.978 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.020 4.020 3 O -0.277 6.277 4 C 0.307 3.693 5 O -0.431 6.431 6 C -0.093 4.093 7 H 0.156 0.844 8 C -0.141 4.141 9 C -0.159 4.159 10 C 0.038 3.962 11 H 0.088 0.912 12 N -0.356 5.356 13 C 0.374 3.626 14 O -0.435 6.435 15 C -0.092 4.092 16 C -0.148 4.148 17 C -0.142 4.142 18 C -0.079 4.079 19 C -0.186 4.186 20 C -0.064 4.064 21 C -0.183 4.183 22 O -0.373 6.373 23 Si 0.678 3.322 24 C -0.120 4.120 25 C 0.000 4.000 26 N -0.164 5.164 27 C -0.152 4.152 28 C -0.137 4.137 29 H 0.089 0.911 30 H 0.114 0.886 31 H 0.087 0.913 32 H 0.087 0.913 33 H 0.083 0.917 34 H 0.106 0.894 35 H 0.076 0.924 36 H 0.076 0.924 37 H 0.111 0.889 38 H 0.250 0.750 39 H 0.172 0.828 40 H 0.159 0.841 41 H 0.136 0.864 42 H 0.118 0.882 43 H 0.255 0.745 44 H -0.217 1.217 45 H -0.229 1.229 46 H 0.166 0.834 47 H 0.277 0.723 48 H 0.102 0.898 49 H 0.119 0.881 50 H 0.077 0.923 51 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -1.654 4.070 -6.696 8.009 hybrid contribution -0.133 -0.953 -0.209 0.985 sum -1.787 3.117 -6.905 7.784 Atomic orbital electron populations 1.21821 0.90674 1.04244 1.03763 1.23237 0.96936 0.79449 1.02375 1.86515 1.24342 1.33356 1.83460 1.24352 0.80537 0.93379 0.70986 1.90673 1.61137 1.44522 1.46772 1.21264 0.96557 0.88228 1.03244 0.84394 1.21427 1.02040 0.95101 0.95523 1.21852 0.94128 0.96413 1.03529 1.21131 0.93533 0.81390 1.00156 0.91159 1.45786 1.64221 1.17226 1.08373 1.17210 0.77546 0.83418 0.84379 1.90868 1.51925 1.68056 1.32688 1.20008 1.08029 0.93794 0.87399 1.21067 1.02313 0.92430 0.98978 1.18383 1.06489 0.96072 0.93233 1.20520 0.95894 0.90874 1.00638 1.20501 1.04785 0.99284 0.93998 1.19423 0.98525 0.95654 0.92838 1.24746 0.90855 1.00149 1.02581 1.86438 1.41610 1.42111 1.67132 0.94585 0.78206 0.81141 0.78251 1.20038 1.00990 0.90370 1.00619 1.18415 1.00273 0.87619 0.93697 1.41737 1.53940 1.11954 1.08760 1.21753 1.01827 0.94407 0.97183 1.21359 0.91528 0.97195 1.03644 0.91079 0.88634 0.91341 0.91323 0.91722 0.89393 0.92388 0.92364 0.88923 0.74969 0.82768 0.84071 0.86391 0.88171 0.74450 1.21659 1.22884 0.83363 0.72341 0.89753 0.88068 0.92292 0.90113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.49 10.29 71.98 0.74 1.23 16 2 C 0.05 0.08 6.19 71.98 0.45 0.52 16 3 O -0.36 -1.23 10.12 -51.37 -0.52 -1.75 16 4 C 0.46 1.95 7.25 71.24 0.52 2.47 16 5 O -0.54 -5.90 15.73 21.97 0.35 -5.55 16 6 C -0.07 0.22 2.63 -11.54 -0.03 0.19 16 7 H 0.14 -1.11 8.14 -2.39 -0.02 -1.13 16 8 C -0.10 0.27 5.13 30.59 0.16 0.43 16 9 C -0.12 0.43 5.49 30.59 0.17 0.60 16 10 C 0.14 -0.44 2.45 44.99 0.11 -0.33 16 11 H 0.07 0.20 7.58 -2.39 -0.02 0.18 16 12 N -0.71 2.76 5.07 -446.15 -2.26 0.49 16 13 C 0.59 2.44 7.76 86.56 0.67 3.11 16 14 O -0.56 -7.07 16.50 -4.16 -0.07 -7.14 16 15 C 0.02 0.06 6.97 39.91 0.28 0.34 16 16 C -0.12 -0.82 10.53 22.55 0.24 -0.58 16 17 C -0.14 -0.94 6.16 -21.36 -0.13 -1.07 16 18 C -0.06 -0.37 10.06 22.30 0.22 -0.15 16 19 C -0.17 -1.02 8.59 22.02 0.19 -0.83 16 20 C -0.06 -0.25 5.43 -19.83 -0.11 -0.36 16 21 C -0.07 0.15 2.80 71.24 0.20 0.35 16 22 O -0.56 1.21 12.73 -148.98 -1.90 -0.69 16 23 Si 0.77 -1.81 29.75 68.60 2.04 0.24 16 24 C -0.10 -0.24 9.61 22.37 0.22 -0.03 16 25 C 0.11 0.40 7.25 39.13 0.28 0.69 16 26 N -0.56 0.83 6.07 -177.19 -1.08 -0.25 16 27 C -0.11 0.86 5.39 30.59 0.16 1.03 16 28 C -0.10 0.30 4.49 30.60 0.14 0.44 16 29 H 0.07 -0.26 8.14 -2.39 -0.02 -0.28 16 30 H 0.10 -0.58 8.14 -2.39 -0.02 -0.60 16 31 H 0.07 -0.21 8.14 -2.39 -0.02 -0.23 16 32 H 0.07 0.11 8.13 -2.39 -0.02 0.09 16 33 H 0.06 0.15 8.13 -2.39 -0.02 0.14 16 34 H 0.09 -0.28 8.11 -2.39 -0.02 -0.30 16 35 H 0.06 0.04 8.14 -2.39 -0.02 0.02 16 36 H 0.06 0.08 8.14 -2.39 -0.02 0.06 16 37 H 0.09 -0.70 8.14 -2.39 -0.02 -0.72 16 38 H 0.41 -4.49 7.66 -92.71 -0.71 -5.20 16 39 H 0.15 1.00 8.06 -2.91 -0.02 0.98 16 40 H 0.14 0.37 8.06 -2.91 -0.02 0.34 16 41 H 0.12 0.62 4.82 -2.91 -0.01 0.61 16 42 H 0.10 -0.68 7.96 -2.39 -0.02 -0.70 16 43 H 0.40 -5.10 8.74 -74.06 -0.65 -5.75 16 44 H -0.29 -0.94 7.11 99.48 0.71 -0.24 16 45 H -0.30 -1.80 7.11 99.48 0.71 -1.09 16 46 H 0.15 -0.31 8.06 -2.91 -0.02 -0.34 16 47 H 0.44 -4.08 8.12 -92.71 -0.75 -4.84 16 48 H 0.08 -0.65 8.14 -2.39 -0.02 -0.67 16 49 H 0.10 -1.25 8.14 -2.39 -0.02 -1.27 16 50 H 0.06 0.07 8.10 -2.39 -0.02 0.05 16 51 H 0.08 -0.20 8.10 -2.39 -0.02 -0.22 16 Total: 0.00 -27.67 417.60 -0.06 -27.73 By element: Atomic # 1 Polarization: -20.03 SS G_CDS: -1.09 Total: -21.11 kcal Atomic # 6 Polarization: 3.57 SS G_CDS: 4.47 Total: 8.04 kcal Atomic # 7 Polarization: 3.59 SS G_CDS: -3.34 Total: 0.25 kcal Atomic # 8 Polarization: -12.99 SS G_CDS: -2.14 Total: -15.13 kcal Atomic # 14 Polarization: -1.81 SS G_CDS: 2.04 Total: 0.24 kcal Total: -27.67 -0.06 -27.73 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14589458_13158378.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.072 kcal (2) G-P(sol) polarization free energy of solvation -27.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -27.726 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds