Wall clock time and date at job start Sun Mar 7 2021 02:29:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.45200 * 109.47003 * 2 1 4 4 C 1.34222 * 117.00098 * 180.02562 * 3 2 1 5 5 O 1.20822 * 120.00130 * 359.97438 * 4 3 2 6 6 C 1.50703 * 119.99989 * 180.02562 * 4 3 2 7 7 H 1.08994 * 109.47313 * 59.99805 * 6 4 3 8 8 C 1.53005 * 109.47031 * 179.97438 * 6 4 3 9 9 C 1.53000 * 109.47148 * 179.97438 * 8 6 4 10 10 C 1.52998 * 109.46997 * 300.00497 * 9 8 6 11 11 H 1.09006 * 109.47115 * 299.99363 * 10 9 8 12 12 N 1.46501 * 109.47195 * 179.97438 * 10 9 8 13 13 C 1.34772 * 120.00377 * 154.99715 * 12 10 9 14 14 O 1.21587 * 120.00193 * 359.97438 * 13 12 10 15 15 C 1.47571 * 120.00462 * 180.02562 * 13 12 10 16 16 C 1.40206 * 120.12381 * 179.72220 * 15 13 12 17 17 O 1.35653 * 120.00293 * 0.02562 * 16 15 13 18 18 C 1.38824 * 119.99475 * 179.74080 * 16 15 13 19 19 C 1.37774 * 120.24186 * 0.55863 * 18 16 15 20 20 C 1.39839 * 120.24495 * 359.69583 * 19 18 16 21 21 C 1.47819 * 120.00188 * 180.02562 * 20 19 18 22 22 C 1.35940 * 125.92648 * 0.02562 * 21 20 19 23 23 C 1.40966 * 106.73887 * 180.02562 * 22 21 20 24 24 C 1.34705 * 107.03224 * 0.02562 * 23 22 21 25 25 C 1.50701 * 125.66407 * 180.02562 * 24 23 22 26 26 O 1.42903 * 109.47144 * 64.99984 * 25 24 23 27 27 Si 1.86298 * 109.46904 * 184.99975 * 25 24 23 28 28 O 1.34338 * 108.66613 * 359.73563 * 24 23 22 29 29 C 1.39177 * 120.00102 * 0.02562 * 20 19 18 30 30 C 1.52995 * 109.47592 * 59.99787 * 10 9 8 31 31 C 1.52996 * 109.47096 * 299.99621 * 6 4 3 32 32 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 33 33 H 1.08993 * 109.46955 * 300.00258 * 1 2 3 34 34 H 1.09000 * 109.47050 * 60.00087 * 1 2 3 35 35 H 1.09000 * 109.47050 * 119.99913 * 2 1 3 36 36 H 1.09001 * 109.46801 * 240.00026 * 2 1 3 37 37 H 1.08998 * 109.47391 * 299.99865 * 8 6 4 38 38 H 1.09003 * 109.46727 * 60.00253 * 8 6 4 39 39 H 1.09003 * 109.47242 * 59.99663 * 9 8 6 40 40 H 1.08999 * 109.47195 * 180.02562 * 9 8 6 41 41 H 0.97001 * 119.99973 * 335.00172 * 12 10 9 42 42 H 0.96701 * 113.99723 * 89.99942 * 17 16 15 43 43 H 1.07992 * 119.87757 * 180.27653 * 18 16 15 44 44 H 1.07997 * 119.87335 * 179.72063 * 19 18 16 45 45 H 1.08005 * 126.62783 * 0.02562 * 22 21 20 46 46 H 1.08005 * 126.47998 * 179.97438 * 23 22 21 47 47 H 1.08996 * 109.47074 * 304.99860 * 25 24 23 48 48 H 0.96698 * 113.99806 * 59.99995 * 26 25 24 49 49 H 1.48495 * 110.00107 * 58.68023 * 27 25 24 50 50 H 1.48501 * 109.99843 * 180.02562 * 27 25 24 51 51 H 1.08005 * 120.11950 * 179.97438 * 29 20 19 52 52 H 1.09003 * 109.47335 * 60.00413 * 30 10 9 53 53 H 1.09003 * 109.47352 * 179.97438 * 30 10 9 54 54 H 1.09003 * 109.47498 * 300.00259 * 31 6 4 55 55 H 1.08999 * 109.47410 * 59.99899 * 31 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5449 -0.0005 5 8 4.0807 0.5868 -0.0005 6 6 3.9206 2.9375 0.0000 7 1 3.5851 3.4691 0.8904 8 6 5.4486 2.8575 -0.0001 9 6 6.0334 4.2713 -0.0002 10 6 5.5616 5.0182 -1.2494 11 1 5.8975 4.4861 -2.1394 12 7 6.1210 6.3722 -1.2492 13 6 6.2844 7.0340 -2.4118 14 8 5.9680 6.5072 -3.4609 15 6 6.8484 8.3977 -2.4117 16 6 7.0249 9.0863 -3.6202 17 8 6.6766 8.4993 -4.7925 18 6 7.5507 10.3711 -3.6165 19 6 7.9115 10.9698 -2.4293 20 6 7.7448 10.2903 -1.2185 21 6 8.1331 10.9380 0.0522 22 6 8.6607 12.1839 0.1837 23 6 8.8771 12.3898 1.5613 24 6 8.4757 11.2711 2.1953 25 6 8.5218 11.0402 3.6838 26 8 7.6333 11.9505 4.3348 27 14 8.0015 9.2907 4.0571 28 8 8.0216 10.3981 1.2808 29 6 7.2132 9.0041 -1.2099 30 6 4.0337 5.0983 -1.2492 31 6 3.4485 3.6851 -1.2486 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3633 0.5138 0.8899 34 1 -0.3633 0.5138 -0.8900 35 1 1.8934 -0.5138 0.8900 36 1 1.8933 -0.5138 -0.8900 37 1 5.7847 2.3250 0.8896 38 1 5.7844 2.3257 -0.8904 39 1 5.6974 4.8035 0.8898 40 1 7.1219 4.2143 -0.0008 41 1 6.3738 6.7924 -0.4123 42 1 5.7621 8.6659 -5.0592 43 1 7.6817 10.9014 -4.5481 44 1 8.3242 11.9678 -2.4338 45 1 8.8730 12.8812 -0.6133 46 1 9.2880 13.2764 2.0213 47 1 9.5372 11.2023 4.0454 48 1 6.7101 11.8627 4.0609 49 1 8.8985 8.3343 3.3600 50 1 8.0421 9.0504 5.5220 51 1 7.0840 8.4773 -0.2759 52 1 3.6978 5.6305 -0.3592 53 1 3.6977 5.6308 -2.1390 54 1 3.7841 3.1535 -2.1391 55 1 2.3600 3.7421 -1.2481 There are 77 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 77 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14589458_13259648.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 02:29:19 Heat of formation + Delta-G solvation = -156.952042 kcal Electronic energy + Delta-G solvation = -39685.874231 eV Core-core repulsion = 34428.167281 eV Total energy + Delta-G solvation = -5257.706950 eV No. of doubly occupied orbitals = 77 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 416.181 amu Computer time = 1.36 seconds Orbital eigenvalues (eV) -43.67671 -41.91445 -41.52197 -40.12677 -38.83419 -38.08290 -37.76400 -37.64492 -35.37761 -34.18896 -33.00131 -32.69388 -32.46543 -31.83504 -30.58466 -29.97494 -26.36407 -26.01499 -24.89126 -23.89074 -23.71883 -23.40769 -22.80641 -22.03294 -21.57421 -21.29440 -20.79781 -19.62520 -19.11299 -18.73741 -18.27122 -17.73704 -17.65384 -17.62389 -17.44326 -17.16352 -16.63911 -16.39728 -16.29801 -15.99522 -15.69538 -15.66404 -15.37031 -15.13307 -14.95050 -14.67427 -14.49052 -14.46449 -14.29821 -14.08108 -13.94570 -13.86360 -13.81319 -13.57117 -13.42773 -13.24549 -13.17219 -13.09441 -12.94321 -12.76960 -12.73371 -12.51938 -12.38717 -12.18955 -12.18589 -11.84872 -11.61795 -11.53292 -11.45158 -11.32600 -11.03981 -10.84602 -10.62911 -10.44198 -10.28997 -10.02688 -8.88404 -5.00560 -0.53585 -0.17674 0.79506 1.09968 1.19311 1.46184 1.52484 1.62895 1.79306 1.90664 1.94616 2.04372 2.65964 3.13604 3.26719 3.41250 3.46244 3.51007 3.59878 3.65184 3.69284 3.92284 3.92973 3.97281 4.03379 4.03555 4.08289 4.08397 4.18237 4.23767 4.29790 4.31693 4.32821 4.34880 4.43204 4.43882 4.61571 4.67012 4.70320 4.76133 4.81196 4.83477 4.88931 4.89849 4.94329 5.04267 5.04350 5.09402 5.10548 5.15383 5.16770 5.22757 5.26171 5.29478 5.43398 5.45652 5.49406 5.53176 6.01038 6.47484 6.64979 6.66019 6.74850 7.17398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.053 3.947 3 O -0.359 6.359 4 C 0.463 3.537 5 O -0.542 6.542 6 C -0.074 4.074 7 H 0.140 0.860 8 C -0.099 4.099 9 C -0.117 4.117 10 C 0.143 3.857 11 H 0.063 0.937 12 N -0.711 5.711 13 C 0.558 3.442 14 O -0.559 6.559 15 C -0.179 4.179 16 C 0.163 3.837 17 O -0.496 6.496 18 C -0.148 4.148 19 C -0.046 4.046 20 C -0.041 4.041 21 C 0.025 3.975 22 C -0.192 4.192 23 C -0.185 4.185 24 C -0.055 4.055 25 C -0.032 4.032 26 O -0.543 6.543 27 Si 0.783 3.217 28 O -0.168 6.168 29 C -0.049 4.049 30 C -0.118 4.118 31 C -0.102 4.102 32 H 0.095 0.905 33 H 0.071 0.929 34 H 0.068 0.932 35 H 0.068 0.932 36 H 0.064 0.936 37 H 0.079 0.921 38 H 0.056 0.944 39 H 0.103 0.897 40 H 0.079 0.921 41 H 0.413 0.587 42 H 0.410 0.590 43 H 0.162 0.838 44 H 0.163 0.837 45 H 0.173 0.827 46 H 0.159 0.841 47 H 0.133 0.867 48 H 0.399 0.601 49 H -0.287 1.287 50 H -0.284 1.284 51 H 0.154 0.846 52 H 0.094 0.906 53 H 0.058 0.942 54 H 0.054 0.946 55 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.408 5.383 3.552 7.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.020 4.020 3 O -0.276 6.276 4 C 0.308 3.692 5 O -0.432 6.432 6 C -0.093 4.093 7 H 0.158 0.842 8 C -0.137 4.137 9 C -0.154 4.154 10 C 0.039 3.961 11 H 0.081 0.919 12 N -0.363 5.363 13 C 0.346 3.654 14 O -0.438 6.438 15 C -0.182 4.182 16 C 0.116 3.884 17 O -0.309 6.309 18 C -0.167 4.167 19 C -0.064 4.064 20 C -0.042 4.042 21 C -0.024 4.024 22 C -0.211 4.211 23 C -0.204 4.204 24 C -0.105 4.105 25 C -0.142 4.142 26 O -0.351 6.351 27 Si 0.687 3.313 28 O -0.066 6.066 29 C -0.067 4.067 30 C -0.156 4.156 31 C -0.140 4.140 32 H 0.113 0.887 33 H 0.090 0.910 34 H 0.087 0.913 35 H 0.086 0.914 36 H 0.082 0.918 37 H 0.098 0.902 38 H 0.074 0.926 39 H 0.121 0.879 40 H 0.098 0.902 41 H 0.251 0.749 42 H 0.271 0.729 43 H 0.179 0.821 44 H 0.181 0.819 45 H 0.190 0.810 46 H 0.177 0.823 47 H 0.150 0.850 48 H 0.250 0.750 49 H -0.214 1.214 50 H -0.210 1.210 51 H 0.172 0.828 52 H 0.112 0.888 53 H 0.077 0.923 54 H 0.073 0.927 55 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -3.247 3.605 3.507 5.986 hybrid contribution 0.435 0.383 -0.165 0.603 sum -2.812 3.989 3.342 5.915 Atomic orbital electron populations 1.21820 0.90627 1.04222 1.03798 1.23236 0.96965 0.79496 1.02324 1.86513 1.24299 1.33292 1.83462 1.24364 0.80538 0.93382 0.70947 1.90671 1.61163 1.44559 1.46817 1.21262 0.96389 0.88223 1.03385 0.84210 1.21351 0.91716 0.97177 1.03432 1.21773 1.01611 0.94496 0.97560 1.21038 0.93647 0.81876 0.99559 0.91858 1.45876 1.64622 1.16913 1.08921 1.18237 0.77785 0.85461 0.83948 1.90815 1.51513 1.69087 1.32362 1.20277 1.07858 0.95803 0.94301 1.18908 0.94557 0.90397 0.84515 1.84714 1.35630 1.74980 1.35599 1.21565 1.01489 0.93482 1.00127 1.21403 0.94918 1.00691 0.89406 1.17683 1.03148 0.94245 0.89097 1.20415 1.05350 0.93586 0.83081 1.22145 1.04458 0.96672 0.97794 1.21787 1.05000 0.99931 0.93650 1.23105 1.04406 0.90375 0.92605 1.24543 0.98598 1.07736 0.83293 1.86538 1.22887 1.60512 1.65202 0.93393 0.89060 0.71140 0.77723 1.83885 1.65830 1.42072 1.14827 1.21439 0.94293 0.93731 0.97280 1.21824 0.94018 0.96236 1.03571 1.21418 1.02042 0.95236 0.95341 0.88680 0.91029 0.91310 0.91372 0.91792 0.90228 0.92553 0.87890 0.90210 0.74925 0.72916 0.82082 0.81939 0.81004 0.82335 0.85007 0.74996 1.21393 1.21043 0.82848 0.88751 0.92324 0.92679 0.89275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.50 10.29 71.98 0.74 1.24 16 2 C 0.05 0.08 6.19 71.98 0.45 0.53 16 3 O -0.36 -1.26 10.12 -51.34 -0.52 -1.78 16 4 C 0.46 2.12 7.25 71.24 0.52 2.64 16 5 O -0.54 -6.18 15.73 21.98 0.35 -5.84 16 6 C -0.07 0.18 2.63 -11.54 -0.03 0.15 16 7 H 0.14 -1.09 8.14 -2.39 -0.02 -1.11 16 8 C -0.10 0.18 4.49 30.60 0.14 0.32 16 9 C -0.12 0.68 5.39 30.59 0.16 0.85 16 10 C 0.14 -0.23 2.46 44.99 0.11 -0.12 16 11 H 0.06 0.31 7.58 -2.38 -0.02 0.29 16 12 N -0.71 1.46 5.03 -445.67 -2.24 -0.78 16 13 C 0.56 2.64 7.73 86.71 0.67 3.31 16 14 O -0.56 -7.09 14.81 17.00 0.25 -6.84 16 15 C -0.18 -0.33 5.88 -20.04 -0.12 -0.45 16 16 C 0.16 0.38 6.72 22.89 0.15 0.53 16 17 O -0.50 -2.40 11.55 -68.69 -0.79 -3.20 16 18 C -0.15 0.39 9.96 22.30 0.22 0.61 16 19 C -0.05 0.20 9.54 22.55 0.22 0.42 16 20 C -0.04 0.09 5.87 -20.13 -0.12 -0.03 16 21 C 0.03 -0.03 7.03 24.27 0.17 0.14 16 22 C -0.19 0.38 10.26 22.40 0.23 0.61 16 23 C -0.18 0.14 10.78 22.13 0.24 0.38 16 24 C -0.06 0.07 6.20 24.88 0.15 0.22 16 25 C -0.03 0.11 2.98 71.24 0.21 0.32 16 26 O -0.54 1.80 12.88 -148.98 -1.92 -0.12 16 27 Si 0.78 -3.66 32.11 68.60 2.20 -1.46 16 28 O -0.17 0.17 8.80 -6.44 -0.06 0.12 16 29 C -0.05 0.11 9.20 22.79 0.21 0.32 16 30 C -0.12 0.37 5.49 30.58 0.17 0.54 16 31 C -0.10 0.23 5.13 30.58 0.16 0.39 16 32 H 0.09 -0.58 8.14 -2.39 -0.02 -0.60 16 33 H 0.07 -0.27 8.14 -2.39 -0.02 -0.29 16 34 H 0.07 -0.22 8.14 -2.39 -0.02 -0.24 16 35 H 0.07 0.12 8.13 -2.39 -0.02 0.10 16 36 H 0.06 0.17 8.13 -2.39 -0.02 0.15 16 37 H 0.08 -0.10 8.10 -2.39 -0.02 -0.12 16 38 H 0.06 0.15 8.10 -2.39 -0.02 0.13 16 39 H 0.10 -1.13 8.14 -2.39 -0.02 -1.15 16 40 H 0.08 -0.43 8.14 -2.39 -0.02 -0.45 16 41 H 0.41 -3.31 6.63 -92.71 -0.61 -3.92 16 42 H 0.41 -0.99 9.06 -74.06 -0.67 -1.66 16 43 H 0.16 -1.03 8.06 -2.91 -0.02 -1.05 16 44 H 0.16 -1.55 6.96 -2.91 -0.02 -1.57 16 45 H 0.17 -1.14 7.25 -2.91 -0.02 -1.16 16 46 H 0.16 -0.39 8.06 -2.91 -0.02 -0.41 16 47 H 0.13 -0.48 7.96 -2.39 -0.02 -0.50 16 48 H 0.40 -4.47 8.70 -74.06 -0.64 -5.12 16 49 H -0.29 -0.37 7.11 99.48 0.71 0.34 16 50 H -0.28 -0.41 7.11 99.48 0.71 0.29 16 51 H 0.15 -1.08 6.24 -2.91 -0.02 -1.10 16 52 H 0.09 -0.71 8.14 -2.39 -0.02 -0.73 16 53 H 0.06 0.07 8.14 -2.39 -0.02 0.05 16 54 H 0.05 0.08 8.14 -2.39 -0.02 0.06 16 55 H 0.09 -0.29 8.11 -2.39 -0.02 -0.31 16 Total: 0.00 -28.06 457.06 0.99 -27.06 By element: Atomic # 1 Polarization: -19.16 SS G_CDS: -0.93 Total: -20.09 kcal Atomic # 6 Polarization: 8.27 SS G_CDS: 4.65 Total: 12.92 kcal Atomic # 7 Polarization: 1.46 SS G_CDS: -2.24 Total: -0.78 kcal Atomic # 8 Polarization: -14.97 SS G_CDS: -2.69 Total: -17.66 kcal Atomic # 14 Polarization: -3.66 SS G_CDS: 2.20 Total: -1.46 kcal Total: -28.06 0.99 -27.06 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14589458_13259648.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -129.889 kcal (2) G-P(sol) polarization free energy of solvation -28.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.992 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -27.063 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds