Wall clock time and date at job start Sun Mar 7 2021 02:29:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.45207 * 109.46847 * 2 1 4 4 C 1.34231 * 116.99496 * 180.02562 * 3 2 1 5 5 O 1.20826 * 120.00140 * 359.97438 * 4 3 2 6 6 C 1.50695 * 119.99668 * 180.02562 * 4 3 2 7 7 H 1.09001 * 109.47306 * 299.99685 * 6 4 3 8 8 C 1.52998 * 109.47268 * 59.99812 * 6 4 3 9 9 C 1.53005 * 109.47337 * 179.97438 * 8 6 4 10 10 C 1.53001 * 109.47163 * 300.00419 * 9 8 6 11 11 H 1.09001 * 109.46845 * 299.99695 * 10 9 8 12 12 N 1.46503 * 109.47050 * 179.97438 * 10 9 8 13 13 C 1.34780 * 120.00045 * 84.99869 * 12 10 9 14 14 O 1.21573 * 119.99832 * 359.97438 * 13 12 10 15 15 C 1.47653 * 119.99762 * 180.02562 * 13 12 10 16 16 C 1.40160 * 119.97395 * 359.97107 * 15 13 12 17 17 C 1.36361 * 120.66850 * 180.02562 * 16 15 13 18 18 C 1.39328 * 120.23482 * 359.96242 * 17 16 15 19 19 N 1.37400 * 133.25315 * 180.02562 * 18 17 16 20 20 C 1.36863 * 109.98171 * 180.02562 * 19 18 17 21 21 C 1.34194 * 109.96847 * 359.77144 * 20 19 18 22 22 C 1.50696 * 126.54247 * 180.25450 * 21 20 19 23 23 O 1.42907 * 109.47239 * 105.11056 * 22 21 20 24 24 Si 1.86305 * 109.47046 * 345.11525 * 22 21 20 25 25 C 1.40908 * 119.64208 * 0.06234 * 18 17 16 26 26 C 1.39185 * 119.96870 * 180.02562 * 15 13 12 27 27 C 1.52998 * 109.47336 * 59.99580 * 10 9 8 28 28 C 1.52995 * 109.47344 * 300.00319 * 27 10 9 29 29 H 1.09004 * 109.46670 * 300.00132 * 1 2 3 30 30 H 1.08996 * 109.47153 * 59.99551 * 1 2 3 31 31 H 1.08993 * 109.47060 * 179.97438 * 1 2 3 32 32 H 1.08993 * 109.47052 * 240.00072 * 2 1 3 33 33 H 1.09001 * 109.47240 * 119.99704 * 2 1 3 34 34 H 1.08991 * 109.47578 * 300.00025 * 8 6 4 35 35 H 1.09003 * 109.46984 * 60.00500 * 8 6 4 36 36 H 1.08997 * 109.47042 * 179.97438 * 9 8 6 37 37 H 1.09001 * 109.46991 * 60.00024 * 9 8 6 38 38 H 0.97002 * 119.99964 * 264.99716 * 12 10 9 39 39 H 1.07999 * 119.66757 * 0.02562 * 16 15 13 40 40 H 1.07995 * 119.88015 * 179.97438 * 17 16 15 41 41 H 0.96997 * 125.01058 * 359.96696 * 19 18 17 42 42 H 1.08006 * 125.01846 * 179.97438 * 20 19 18 43 43 H 1.08993 * 109.47136 * 225.11479 * 22 21 20 44 44 H 0.96697 * 113.99777 * 179.97438 * 23 22 21 45 45 H 1.48499 * 109.99822 * 298.68032 * 24 22 21 46 46 H 1.48492 * 110.00139 * 59.99977 * 24 22 21 47 47 H 1.07994 * 120.30828 * 359.97396 * 26 15 13 48 48 H 1.09001 * 109.47060 * 60.00247 * 27 10 9 49 49 H 1.09004 * 109.47383 * 179.97438 * 27 10 9 50 50 H 1.09000 * 109.47548 * 180.02562 * 28 27 10 51 51 H 1.09001 * 109.46983 * 299.99975 * 28 27 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3691 0.0000 4 6 3.3447 1.5449 -0.0005 5 8 4.0807 0.5867 -0.0005 6 6 3.9207 2.9374 0.0000 7 1 3.5844 3.4701 -0.8895 8 6 3.4497 3.6836 1.2499 9 6 4.0350 5.0973 1.2508 10 6 5.5629 5.0167 1.2503 11 1 5.8989 4.4839 2.1398 12 7 6.1233 6.3704 1.2505 13 6 6.2874 7.0316 2.4134 14 8 5.9700 6.5049 3.4621 15 6 6.8517 8.3960 2.4135 16 6 7.2170 9.0028 1.2041 17 6 7.7399 10.2621 1.1877 18 6 7.9172 10.9636 2.3784 19 7 8.4065 12.2138 2.6707 20 6 8.3674 12.4273 4.0220 21 6 7.8585 11.3511 4.6414 22 6 7.6433 11.1872 6.1238 23 8 6.2506 11.3103 6.4195 24 14 8.5910 12.5050 7.0383 25 6 7.5543 10.3644 3.6010 26 6 7.0214 9.0781 3.6149 27 6 6.0339 4.2705 0.0004 28 6 5.4486 2.8569 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0276 -0.0005 32 1 1.8933 -0.5138 -0.8899 33 1 1.8934 -0.5138 0.8900 34 1 2.3613 3.7407 1.2505 35 1 3.7862 3.1510 2.1394 36 1 3.6991 5.6291 2.1410 37 1 3.6990 5.6302 0.3612 38 1 6.3762 6.7907 0.4137 39 1 7.0830 8.4677 0.2756 40 1 8.0174 10.7173 0.2486 41 1 8.7325 12.8509 2.0159 42 1 8.6944 13.3300 4.5166 43 1 7.9954 10.2040 6.4356 44 1 6.0378 11.2150 7.3579 45 1 10.0440 12.3681 6.7644 46 1 8.1202 13.8504 6.6221 47 1 6.7418 8.6143 4.5492 48 1 5.6979 4.8034 -0.8891 49 1 7.1224 4.2135 -0.0002 50 1 5.7845 2.3251 -0.8907 51 1 5.7846 2.3240 0.8890 There are 69 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 69 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_14589458_13287722.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 02:29:25 Heat of formation + Delta-G solvation = -103.483836 kcal Electronic energy + Delta-G solvation = -33169.054743 eV Core-core repulsion = 28613.830962 eV Total energy + Delta-G solvation = -4555.223781 eV No. of doubly occupied orbitals = 69 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 373.177 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.49768 -41.72211 -40.84826 -39.11325 -37.81722 -37.51560 -37.31749 -35.25426 -33.38421 -32.76287 -31.86554 -31.56033 -30.71673 -29.96388 -26.43234 -25.82883 -24.50750 -23.85605 -23.52472 -23.41390 -21.90308 -21.41371 -20.94069 -20.43973 -19.09566 -18.63248 -18.41173 -18.29449 -17.68821 -17.50998 -17.37058 -16.96393 -16.12936 -15.90885 -15.72481 -15.42771 -15.35315 -15.14566 -15.04452 -14.88837 -14.77531 -14.72527 -14.44063 -14.21011 -14.08159 -13.85230 -13.77599 -13.51863 -13.45949 -13.28811 -12.88426 -12.73376 -12.68087 -12.58137 -12.48251 -12.34165 -12.23513 -12.01668 -11.85975 -11.62145 -11.45591 -11.39372 -11.20487 -10.79699 -10.75990 -10.19397 -10.00702 -9.33562 -8.84685 -5.02368 -0.05443 0.17941 1.27475 1.28638 1.41222 1.65486 1.69876 1.92699 1.95233 2.01432 2.18365 2.96855 3.48405 3.51111 3.54473 3.59210 3.62629 3.67266 3.84617 3.90487 3.95454 3.99612 4.03311 4.05966 4.12071 4.16598 4.24883 4.25519 4.31435 4.32972 4.37563 4.38963 4.47277 4.56838 4.61659 4.69029 4.77386 4.78084 4.83620 4.93997 4.96986 5.01133 5.04203 5.07482 5.10785 5.21757 5.24620 5.29132 5.37506 5.47136 5.53616 5.58018 5.58634 5.96332 6.33184 6.58129 6.74181 6.82637 7.35006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.061 3.939 3 O -0.357 6.357 4 C 0.465 3.535 5 O -0.506 6.506 6 C -0.081 4.081 7 H 0.111 0.889 8 C -0.108 4.108 9 C -0.128 4.128 10 C 0.143 3.857 11 H 0.093 0.907 12 N -0.726 5.726 13 C 0.567 3.433 14 O -0.536 6.536 15 C -0.169 4.169 16 C -0.066 4.066 17 C -0.133 4.133 18 C 0.119 3.881 19 N -0.584 5.584 20 C 0.056 3.944 21 C -0.144 4.144 22 C -0.038 4.038 23 O -0.546 6.546 24 Si 0.687 3.313 25 C -0.102 4.102 26 C 0.010 3.990 27 C -0.126 4.126 28 C -0.101 4.101 29 H 0.068 0.932 30 H 0.067 0.933 31 H 0.081 0.919 32 H 0.070 0.930 33 H 0.070 0.930 34 H 0.082 0.918 35 H 0.072 0.928 36 H 0.077 0.923 37 H 0.069 0.931 38 H 0.399 0.601 39 H 0.129 0.871 40 H 0.128 0.872 41 H 0.421 0.579 42 H 0.170 0.830 43 H 0.072 0.928 44 H 0.380 0.620 45 H -0.256 1.256 46 H -0.253 1.253 47 H 0.139 0.861 48 H 0.072 0.928 49 H 0.078 0.922 50 H 0.079 0.921 51 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.517 3.752 -1.420 4.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.013 4.013 3 O -0.274 6.274 4 C 0.308 3.692 5 O -0.394 6.394 6 C -0.100 4.100 7 H 0.129 0.871 8 C -0.146 4.146 9 C -0.166 4.166 10 C 0.038 3.962 11 H 0.111 0.889 12 N -0.377 5.377 13 C 0.355 3.645 14 O -0.414 6.414 15 C -0.173 4.173 16 C -0.086 4.086 17 C -0.154 4.154 18 C 0.010 3.990 19 N -0.187 5.187 20 C -0.071 4.071 21 C -0.151 4.151 22 C -0.150 4.150 23 O -0.352 6.352 24 Si 0.588 3.412 25 C -0.106 4.106 26 C -0.010 4.010 27 C -0.163 4.163 28 C -0.139 4.139 29 H 0.087 0.913 30 H 0.086 0.914 31 H 0.099 0.901 32 H 0.088 0.912 33 H 0.089 0.911 34 H 0.101 0.899 35 H 0.091 0.909 36 H 0.096 0.904 37 H 0.088 0.912 38 H 0.234 0.766 39 H 0.147 0.853 40 H 0.146 0.854 41 H 0.259 0.741 42 H 0.187 0.813 43 H 0.090 0.910 44 H 0.228 0.772 45 H -0.180 1.180 46 H -0.178 1.178 47 H 0.157 0.843 48 H 0.091 0.909 49 H 0.097 0.903 50 H 0.098 0.902 51 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 1.047 3.933 -1.440 4.317 hybrid contribution 0.238 0.105 -1.329 1.354 sum 1.285 4.038 -2.769 5.062 Atomic orbital electron populations 1.21819 0.92363 1.03225 1.03649 1.23073 0.95578 0.79937 1.02707 1.86509 1.24459 1.32657 1.83786 1.23753 0.80662 0.92633 0.72157 1.90686 1.60463 1.43172 1.45044 1.21178 0.96702 0.89788 1.02296 0.87110 1.21495 1.01727 0.95361 0.96019 1.21929 0.94832 0.96469 1.03406 1.21050 0.93108 0.82280 0.99714 0.88943 1.45947 1.65665 1.17055 1.09070 1.18149 0.77519 0.85220 0.83617 1.90791 1.50630 1.68665 1.31290 1.19553 1.08463 0.95301 0.94023 1.20589 0.96849 0.94199 0.96916 1.19664 1.05323 0.95210 0.95197 1.18440 0.99168 0.85947 0.95405 1.41685 1.55445 1.14369 1.07175 1.21580 1.03405 0.99345 0.82759 1.19638 1.08137 0.94250 0.93087 1.23994 0.88806 1.08154 0.94018 1.86534 1.22293 1.95779 1.30589 0.94983 0.78496 0.77896 0.89834 1.18902 1.05021 0.94971 0.91709 1.20672 0.91312 0.91001 0.97972 1.21818 1.01548 0.95509 0.97473 1.21389 0.91536 0.96494 1.04443 0.91341 0.91402 0.90051 0.91164 0.91117 0.89945 0.90903 0.90436 0.91201 0.76569 0.85304 0.85382 0.74075 0.81336 0.90964 0.77243 1.18019 1.17781 0.84307 0.90897 0.90325 0.90218 0.90397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.19 10.29 37.16 0.38 0.57 16 2 C 0.06 0.05 6.19 37.16 0.23 0.28 16 3 O -0.36 -0.73 10.12 -39.26 -0.40 -1.13 16 4 C 0.47 1.11 7.25 36.00 0.26 1.38 16 5 O -0.51 -2.67 15.73 -18.75 -0.29 -2.97 16 6 C -0.08 0.04 2.63 -91.77 -0.24 -0.20 16 7 H 0.11 -0.23 8.14 -51.93 -0.42 -0.65 16 8 C -0.11 0.05 5.14 -26.73 -0.14 -0.08 16 9 C -0.13 0.05 5.50 -26.73 -0.15 -0.10 16 10 C 0.14 -0.03 2.45 -67.93 -0.17 -0.20 16 11 H 0.09 0.18 7.58 -51.93 -0.39 -0.22 16 12 N -0.73 0.11 5.03 -54.81 -0.28 -0.17 16 13 C 0.57 1.82 7.73 -12.42 -0.10 1.72 16 14 O -0.54 -3.68 15.99 5.30 0.08 -3.60 16 15 C -0.17 -0.43 5.87 -104.98 -0.62 -1.04 16 16 C -0.07 0.00 9.46 -39.54 -0.37 -0.37 16 17 C -0.13 -0.01 10.00 -39.85 -0.40 -0.41 16 18 C 0.12 0.22 7.27 -83.95 -0.61 -0.39 16 19 N -0.58 -0.03 6.05 -10.61 -0.06 -0.10 16 20 C 0.06 0.06 10.43 -16.73 -0.17 -0.11 16 21 C -0.14 -0.40 5.61 -102.69 -0.58 -0.98 16 22 C -0.04 -0.03 3.05 36.00 0.11 0.08 16 23 O -0.55 -0.68 12.86 -35.23 -0.45 -1.14 16 24 Si 0.69 -0.92 30.79 -169.99 -5.23 -6.16 16 25 C -0.10 -0.37 6.34 -105.16 -0.67 -1.03 16 26 C 0.01 0.04 9.64 -38.86 -0.37 -0.34 16 27 C -0.13 0.26 5.39 -26.73 -0.14 0.12 16 28 C -0.10 0.07 4.49 -26.73 -0.12 -0.05 16 29 H 0.07 -0.08 8.14 -51.93 -0.42 -0.50 16 30 H 0.07 -0.08 8.14 -51.93 -0.42 -0.51 16 31 H 0.08 -0.20 8.14 -51.93 -0.42 -0.62 16 32 H 0.07 0.05 8.13 -51.93 -0.42 -0.37 16 33 H 0.07 0.06 8.13 -51.93 -0.42 -0.36 16 34 H 0.08 -0.05 8.11 -51.93 -0.42 -0.48 16 35 H 0.07 0.03 8.14 -51.93 -0.42 -0.39 16 36 H 0.08 0.13 8.14 -51.93 -0.42 -0.30 16 37 H 0.07 -0.10 8.14 -51.93 -0.42 -0.53 16 38 H 0.40 -1.14 6.60 -40.82 -0.27 -1.41 16 39 H 0.13 -0.43 6.36 -52.49 -0.33 -0.76 16 40 H 0.13 -0.32 8.06 -52.49 -0.42 -0.75 16 41 H 0.42 -1.36 8.96 -40.82 -0.37 -1.73 16 42 H 0.17 -0.14 6.30 -52.48 -0.33 -0.47 16 43 H 0.07 -0.02 7.96 -51.93 -0.41 -0.43 16 44 H 0.38 -1.46 8.74 45.56 0.40 -1.06 16 45 H -0.26 -0.28 7.11 56.52 0.40 0.12 16 46 H -0.25 -0.26 7.04 56.52 0.40 0.13 16 47 H 0.14 0.61 7.64 -52.49 -0.40 0.21 16 48 H 0.07 -0.25 8.14 -51.93 -0.42 -0.67 16 49 H 0.08 -0.17 8.14 -51.93 -0.42 -0.60 16 50 H 0.08 -0.03 8.10 -51.93 -0.42 -0.45 16 51 H 0.08 0.05 8.10 -51.93 -0.42 -0.37 16 LS Contribution 417.53 15.07 6.29 6.29 Total: 0.00 -11.42 417.53 -11.85 -23.27 By element: Atomic # 1 Polarization: -5.50 SS G_CDS: -7.65 Total: -13.15 kcal Atomic # 6 Polarization: 2.70 SS G_CDS: -3.86 Total: -1.16 kcal Atomic # 7 Polarization: 0.07 SS G_CDS: -0.34 Total: -0.27 kcal Atomic # 8 Polarization: -7.77 SS G_CDS: -1.06 Total: -8.83 kcal Atomic # 14 Polarization: -0.92 SS G_CDS: -5.23 Total: -6.16 kcal Total LS contribution 6.29 Total: 6.29 kcal Total: -11.42 -11.85 -23.27 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14589458_13287722.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.216 kcal (2) G-P(sol) polarization free energy of solvation -11.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.268 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds