Wall clock time and date at job start Sun Mar 7 2021 02:29:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.45207 * 109.46847 * 2 1 4 4 C 1.34231 * 116.99496 * 180.02562 * 3 2 1 5 5 O 1.20826 * 120.00140 * 359.97438 * 4 3 2 6 6 C 1.50695 * 119.99668 * 180.02562 * 4 3 2 7 7 H 1.09001 * 109.47306 * 299.99685 * 6 4 3 8 8 C 1.52998 * 109.47268 * 59.99812 * 6 4 3 9 9 C 1.53005 * 109.47337 * 179.97438 * 8 6 4 10 10 C 1.53001 * 109.47163 * 300.00419 * 9 8 6 11 11 H 1.09001 * 109.46845 * 299.99695 * 10 9 8 12 12 N 1.46503 * 109.47050 * 179.97438 * 10 9 8 13 13 C 1.34780 * 120.00045 * 84.99869 * 12 10 9 14 14 O 1.21573 * 119.99832 * 359.97438 * 13 12 10 15 15 C 1.47653 * 119.99762 * 180.02562 * 13 12 10 16 16 C 1.40160 * 119.97395 * 359.97107 * 15 13 12 17 17 C 1.36361 * 120.66850 * 180.02562 * 16 15 13 18 18 C 1.39328 * 120.23482 * 359.96242 * 17 16 15 19 19 N 1.37400 * 133.25315 * 180.02562 * 18 17 16 20 20 C 1.36863 * 109.98171 * 180.02562 * 19 18 17 21 21 C 1.34194 * 109.96847 * 359.77144 * 20 19 18 22 22 C 1.50696 * 126.54247 * 180.25450 * 21 20 19 23 23 O 1.42907 * 109.47239 * 105.11056 * 22 21 20 24 24 Si 1.86305 * 109.47046 * 345.11525 * 22 21 20 25 25 C 1.40908 * 119.64208 * 0.06234 * 18 17 16 26 26 C 1.39185 * 119.96870 * 180.02562 * 15 13 12 27 27 C 1.52998 * 109.47336 * 59.99580 * 10 9 8 28 28 C 1.52995 * 109.47344 * 300.00319 * 27 10 9 29 29 H 1.09004 * 109.46670 * 300.00132 * 1 2 3 30 30 H 1.08996 * 109.47153 * 59.99551 * 1 2 3 31 31 H 1.08993 * 109.47060 * 179.97438 * 1 2 3 32 32 H 1.08993 * 109.47052 * 240.00072 * 2 1 3 33 33 H 1.09001 * 109.47240 * 119.99704 * 2 1 3 34 34 H 1.08991 * 109.47578 * 300.00025 * 8 6 4 35 35 H 1.09003 * 109.46984 * 60.00500 * 8 6 4 36 36 H 1.08997 * 109.47042 * 179.97438 * 9 8 6 37 37 H 1.09001 * 109.46991 * 60.00024 * 9 8 6 38 38 H 0.97002 * 119.99964 * 264.99716 * 12 10 9 39 39 H 1.07999 * 119.66757 * 0.02562 * 16 15 13 40 40 H 1.07995 * 119.88015 * 179.97438 * 17 16 15 41 41 H 0.96997 * 125.01058 * 359.96696 * 19 18 17 42 42 H 1.08006 * 125.01846 * 179.97438 * 20 19 18 43 43 H 1.08993 * 109.47136 * 225.11479 * 22 21 20 44 44 H 0.96697 * 113.99777 * 179.97438 * 23 22 21 45 45 H 1.48499 * 109.99822 * 298.68032 * 24 22 21 46 46 H 1.48492 * 110.00139 * 59.99977 * 24 22 21 47 47 H 1.07994 * 120.30828 * 359.97396 * 26 15 13 48 48 H 1.09001 * 109.47060 * 60.00247 * 27 10 9 49 49 H 1.09004 * 109.47383 * 179.97438 * 27 10 9 50 50 H 1.09000 * 109.47548 * 180.02562 * 28 27 10 51 51 H 1.09001 * 109.46983 * 299.99975 * 28 27 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3691 0.0000 4 6 3.3447 1.5449 -0.0005 5 8 4.0807 0.5867 -0.0005 6 6 3.9207 2.9374 0.0000 7 1 3.5844 3.4701 -0.8895 8 6 3.4497 3.6836 1.2499 9 6 4.0350 5.0973 1.2508 10 6 5.5629 5.0167 1.2503 11 1 5.8989 4.4839 2.1398 12 7 6.1233 6.3704 1.2505 13 6 6.2874 7.0316 2.4134 14 8 5.9700 6.5049 3.4621 15 6 6.8517 8.3960 2.4135 16 6 7.2170 9.0028 1.2041 17 6 7.7399 10.2621 1.1877 18 6 7.9172 10.9636 2.3784 19 7 8.4065 12.2138 2.6707 20 6 8.3674 12.4273 4.0220 21 6 7.8585 11.3511 4.6414 22 6 7.6433 11.1872 6.1238 23 8 6.2506 11.3103 6.4195 24 14 8.5910 12.5050 7.0383 25 6 7.5543 10.3644 3.6010 26 6 7.0214 9.0781 3.6149 27 6 6.0339 4.2705 0.0004 28 6 5.4486 2.8569 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0276 -0.0005 32 1 1.8933 -0.5138 -0.8899 33 1 1.8934 -0.5138 0.8900 34 1 2.3613 3.7407 1.2505 35 1 3.7862 3.1510 2.1394 36 1 3.6991 5.6291 2.1410 37 1 3.6990 5.6302 0.3612 38 1 6.3762 6.7907 0.4137 39 1 7.0830 8.4677 0.2756 40 1 8.0174 10.7173 0.2486 41 1 8.7325 12.8509 2.0159 42 1 8.6944 13.3300 4.5166 43 1 7.9954 10.2040 6.4356 44 1 6.0378 11.2150 7.3579 45 1 10.0440 12.3681 6.7644 46 1 8.1202 13.8504 6.6221 47 1 6.7418 8.6143 4.5492 48 1 5.6979 4.8034 -0.8891 49 1 7.1224 4.2135 -0.0002 50 1 5.7845 2.3251 -0.8907 51 1 5.7846 2.3240 0.8890 There are 69 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 69 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14589458_13287722.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 02:29:24 Heat of formation + Delta-G solvation = -104.038269 kcal Electronic energy + Delta-G solvation = -33169.078785 eV Core-core repulsion = 28613.830962 eV Total energy + Delta-G solvation = -4555.247823 eV No. of doubly occupied orbitals = 69 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 373.177 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -42.55929 -41.87079 -41.02961 -39.18770 -37.90024 -37.67794 -37.43300 -35.41004 -33.45392 -32.78518 -31.83652 -31.64031 -30.78419 -30.02116 -26.47813 -25.92610 -24.58206 -23.84600 -23.56943 -23.46052 -21.99920 -21.53968 -20.98242 -20.51296 -19.15134 -18.78409 -18.50464 -18.33591 -17.75839 -17.65442 -17.47224 -17.10318 -16.22321 -16.02630 -15.77682 -15.47888 -15.40586 -15.19243 -15.09176 -14.96675 -14.85179 -14.83202 -14.53465 -14.26622 -14.09064 -13.85501 -13.79688 -13.56104 -13.48728 -13.26883 -12.95143 -12.77179 -12.74053 -12.65522 -12.52365 -12.37423 -12.18767 -12.07361 -11.92066 -11.62333 -11.53726 -11.46063 -11.35786 -11.00990 -10.89028 -10.20519 -10.14065 -9.42486 -8.91967 -4.93143 -0.21301 0.12069 1.09076 1.33008 1.34690 1.62678 1.70988 1.82545 1.94291 1.97401 2.08933 2.83795 3.44916 3.49172 3.54890 3.61044 3.63501 3.66916 3.77341 3.91367 3.96578 4.00060 4.02979 4.08273 4.09856 4.16925 4.19933 4.29653 4.31486 4.32537 4.34874 4.43188 4.46165 4.50637 4.62216 4.73527 4.75961 4.82666 4.88225 4.93352 4.94935 5.04423 5.08284 5.09959 5.14859 5.19928 5.24617 5.27853 5.31103 5.38284 5.43250 5.47613 5.51297 5.88738 6.43054 6.53185 6.65307 6.94573 7.20491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.053 3.947 3 O -0.360 6.360 4 C 0.463 3.537 5 O -0.541 6.541 6 C -0.074 4.074 7 H 0.139 0.861 8 C -0.102 4.102 9 C -0.120 4.120 10 C 0.142 3.858 11 H 0.063 0.937 12 N -0.706 5.706 13 C 0.563 3.437 14 O -0.585 6.585 15 C -0.177 4.177 16 C -0.061 4.061 17 C -0.127 4.127 18 C 0.109 3.891 19 N -0.573 5.573 20 C 0.057 3.943 21 C -0.181 4.181 22 C -0.059 4.059 23 O -0.569 6.569 24 Si 0.789 3.211 25 C -0.130 4.130 26 C -0.017 4.017 27 C -0.113 4.113 28 C -0.099 4.099 29 H 0.067 0.933 30 H 0.070 0.930 31 H 0.095 0.905 32 H 0.069 0.931 33 H 0.064 0.936 34 H 0.087 0.913 35 H 0.055 0.945 36 H 0.053 0.947 37 H 0.092 0.908 38 H 0.416 0.584 39 H 0.168 0.832 40 H 0.163 0.837 41 H 0.438 0.562 42 H 0.187 0.813 43 H 0.070 0.930 44 H 0.399 0.601 45 H -0.287 1.287 46 H -0.281 1.281 47 H 0.115 0.885 48 H 0.102 0.898 49 H 0.084 0.916 50 H 0.081 0.919 51 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.676 5.204 -3.928 6.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.020 4.020 3 O -0.277 6.277 4 C 0.308 3.692 5 O -0.431 6.431 6 C -0.093 4.093 7 H 0.157 0.843 8 C -0.140 4.140 9 C -0.159 4.159 10 C 0.037 3.963 11 H 0.081 0.919 12 N -0.358 5.358 13 C 0.352 3.648 14 O -0.466 6.466 15 C -0.181 4.181 16 C -0.080 4.080 17 C -0.147 4.147 18 C 0.000 4.000 19 N -0.177 5.177 20 C -0.071 4.071 21 C -0.188 4.188 22 C -0.168 4.168 23 O -0.379 6.379 24 Si 0.692 3.308 25 C -0.135 4.135 26 C -0.036 4.036 27 C -0.151 4.151 28 C -0.137 4.137 29 H 0.086 0.914 30 H 0.089 0.911 31 H 0.114 0.886 32 H 0.087 0.913 33 H 0.083 0.917 34 H 0.105 0.895 35 H 0.074 0.926 36 H 0.071 0.929 37 H 0.111 0.889 38 H 0.255 0.745 39 H 0.185 0.815 40 H 0.181 0.819 41 H 0.279 0.721 42 H 0.204 0.796 43 H 0.088 0.912 44 H 0.249 0.751 45 H -0.214 1.214 46 H -0.207 1.207 47 H 0.133 0.867 48 H 0.120 0.880 49 H 0.103 0.897 50 H 0.100 0.900 51 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 1.184 5.383 -3.991 6.805 hybrid contribution 0.157 -0.394 -0.561 0.703 sum 1.341 4.989 -4.553 6.886 Atomic orbital electron populations 1.21822 0.90671 1.04241 1.03755 1.23241 0.96943 0.79461 1.02377 1.86520 1.24341 1.33356 1.83470 1.24346 0.80529 0.93358 0.70962 1.90668 1.61131 1.44494 1.46788 1.21259 0.96616 0.88224 1.03159 0.84335 1.21421 1.01947 0.95163 0.95503 1.21848 0.94494 0.96281 1.03276 1.21048 0.93344 0.82085 0.99778 0.91866 1.45778 1.64395 1.16777 1.08838 1.18377 0.77093 0.85563 0.83759 1.90765 1.52872 1.69765 1.33193 1.19629 1.08779 0.94944 0.94754 1.20953 0.95668 0.94346 0.97067 1.20089 1.03893 0.94908 0.95782 1.18739 0.99203 0.86543 0.95525 1.41682 1.54718 1.14137 1.07177 1.21871 1.02508 0.99360 0.83315 1.20109 1.09455 0.94944 0.94271 1.24411 0.88952 1.09583 0.93836 1.86476 1.22913 1.95869 1.32618 0.93764 0.74740 0.74190 0.88111 1.19172 1.05872 0.95173 0.93268 1.20611 0.93241 0.91880 0.97898 1.21748 1.01818 0.94313 0.97211 1.21361 0.91491 0.97292 1.03549 0.91372 0.91074 0.88605 0.91289 0.91741 0.89476 0.92609 0.92864 0.88903 0.74514 0.81500 0.81923 0.72141 0.79606 0.91238 0.75090 1.21370 1.20709 0.86728 0.87995 0.89731 0.90030 0.92462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.39 10.29 71.98 0.74 1.13 16 2 C 0.05 0.12 6.19 71.98 0.45 0.56 16 3 O -0.36 -1.61 10.12 -51.42 -0.52 -2.13 16 4 C 0.46 2.50 7.25 71.23 0.52 3.02 16 5 O -0.54 -6.44 15.73 21.96 0.35 -6.09 16 6 C -0.07 0.10 2.63 -11.54 -0.03 0.07 16 7 H 0.14 -0.91 8.14 -2.39 -0.02 -0.93 16 8 C -0.10 0.05 5.14 30.60 0.16 0.20 16 9 C -0.12 0.08 5.50 30.60 0.17 0.25 16 10 C 0.14 -0.02 2.45 44.99 0.11 0.09 16 11 H 0.06 0.40 7.58 -2.39 -0.02 0.38 16 12 N -0.71 0.44 5.03 -445.58 -2.24 -1.80 16 13 C 0.56 4.51 7.73 86.73 0.67 5.18 16 14 O -0.58 -10.07 15.99 -3.95 -0.06 -10.13 16 15 C -0.18 -1.10 5.87 -20.10 -0.12 -1.21 16 16 C -0.06 0.09 9.46 22.30 0.21 0.30 16 17 C -0.13 0.22 10.00 22.09 0.22 0.44 16 18 C 0.11 0.39 7.27 39.19 0.28 0.67 16 19 N -0.57 0.23 6.05 -187.48 -1.13 -0.90 16 20 C 0.06 0.15 10.43 82.98 0.87 1.02 16 21 C -0.18 -1.32 5.61 -18.61 -0.10 -1.43 16 22 C -0.06 -0.20 3.05 71.23 0.22 0.02 16 23 O -0.57 -2.55 12.86 -148.98 -1.92 -4.47 16 24 Si 0.79 -1.79 30.79 68.60 2.11 0.32 16 25 C -0.13 -1.19 6.34 -20.21 -0.13 -1.32 16 26 C -0.02 -0.18 9.64 22.74 0.22 0.04 16 27 C -0.11 0.63 5.39 30.59 0.16 0.79 16 28 C -0.10 0.14 4.49 30.59 0.14 0.28 16 29 H 0.07 -0.16 8.14 -2.38 -0.02 -0.18 16 30 H 0.07 -0.21 8.14 -2.39 -0.02 -0.23 16 31 H 0.10 -0.53 8.14 -2.39 -0.02 -0.55 16 32 H 0.07 0.16 8.13 -2.39 -0.02 0.14 16 33 H 0.06 0.20 8.13 -2.39 -0.02 0.19 16 34 H 0.09 -0.10 8.11 -2.39 -0.02 -0.12 16 35 H 0.06 0.17 8.14 -2.39 -0.02 0.15 16 36 H 0.05 0.26 8.14 -2.39 -0.02 0.24 16 37 H 0.09 -0.46 8.14 -2.39 -0.02 -0.48 16 38 H 0.42 -3.34 6.60 -92.71 -0.61 -3.95 16 39 H 0.17 -1.68 6.36 -2.91 -0.02 -1.70 16 40 H 0.16 -1.43 8.06 -2.91 -0.02 -1.45 16 41 H 0.44 -3.43 8.96 -92.71 -0.83 -4.26 16 42 H 0.19 -0.34 6.30 -2.91 -0.02 -0.35 16 43 H 0.07 0.17 7.96 -2.39 -0.02 0.15 16 44 H 0.40 -2.45 8.74 -74.06 -0.65 -3.10 16 45 H -0.29 -0.79 7.11 99.48 0.71 -0.08 16 46 H -0.28 -0.60 7.04 99.48 0.70 0.11 16 47 H 0.11 1.61 7.64 -2.91 -0.02 1.59 16 48 H 0.10 -1.08 8.14 -2.39 -0.02 -1.10 16 49 H 0.08 -0.50 8.14 -2.38 -0.02 -0.52 16 50 H 0.08 -0.10 8.10 -2.39 -0.02 -0.12 16 51 H 0.06 0.17 8.10 -2.39 -0.02 0.15 16 Total: 0.00 -31.40 417.53 0.26 -31.14 By element: Atomic # 1 Polarization: -14.96 SS G_CDS: -1.07 Total: -16.04 kcal Atomic # 6 Polarization: 5.35 SS G_CDS: 4.75 Total: 10.10 kcal Atomic # 7 Polarization: 0.67 SS G_CDS: -3.37 Total: -2.70 kcal Atomic # 8 Polarization: -20.67 SS G_CDS: -2.15 Total: -22.82 kcal Atomic # 14 Polarization: -1.79 SS G_CDS: 2.11 Total: 0.32 kcal Total: -31.40 0.26 -31.14 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14589458_13287722.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.902 kcal (2) G-P(sol) polarization free energy of solvation -31.396 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.136 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.038 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds