Wall clock time and date at job start Sun Mar 7 2021 02:29:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.45201 * 109.46517 * 2 1 4 4 C 1.34234 * 116.99715 * 180.02562 * 3 2 1 5 5 O 1.20827 * 120.00190 * 359.97438 * 4 3 2 6 6 C 1.50699 * 120.00012 * 180.02562 * 4 3 2 7 7 H 1.09000 * 109.47437 * 300.00285 * 6 4 3 8 8 C 1.53001 * 109.47160 * 59.99864 * 6 4 3 9 9 C 1.52997 * 109.47442 * 180.02562 * 8 6 4 10 10 C 1.53005 * 109.46931 * 300.00318 * 9 8 6 11 11 H 1.09001 * 109.47204 * 299.99614 * 10 9 8 12 12 N 1.46499 * 109.46985 * 179.97438 * 10 9 8 13 13 C 1.34780 * 119.99854 * 85.00065 * 12 10 9 14 14 O 1.21513 * 120.00064 * 359.97438 * 13 12 10 15 15 C 1.48171 * 119.99878 * 179.97438 * 13 12 10 16 16 N 1.32717 * 119.72535 * 359.97299 * 15 13 12 17 17 C 1.31519 * 121.64555 * 179.97438 * 16 15 13 18 18 C 1.38558 * 120.90062 * 0.05129 * 17 16 15 19 19 C 1.50699 * 120.32113 * 180.24772 * 18 17 16 20 20 O 1.42898 * 109.47005 * 119.72272 * 19 18 17 21 21 Si 1.86305 * 109.47198 * 359.72462 * 19 18 17 22 22 C 1.38625 * 119.35464 * 359.97438 * 18 17 16 23 23 C 1.38592 * 118.48828 * 359.97438 * 22 18 17 24 24 C 1.53001 * 109.47317 * 59.99606 * 10 9 8 25 25 C 1.52993 * 109.47112 * 179.97438 * 6 4 3 26 26 H 1.08997 * 109.46960 * 299.99367 * 1 2 3 27 27 H 1.08997 * 109.47651 * 60.00112 * 1 2 3 28 28 H 1.08999 * 109.46340 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.46960 * 240.00633 * 2 1 3 30 30 H 1.08997 * 109.47651 * 119.99888 * 2 1 3 31 31 H 1.09000 * 109.47127 * 300.00251 * 8 6 4 32 32 H 1.09001 * 109.46977 * 60.00300 * 8 6 4 33 33 H 1.08998 * 109.47221 * 180.02562 * 9 8 6 34 34 H 1.08996 * 109.46967 * 59.99685 * 9 8 6 35 35 H 0.97001 * 120.00251 * 264.99576 * 12 10 9 36 36 H 1.07997 * 119.54582 * 180.02562 * 17 16 15 37 37 H 1.09001 * 109.47771 * 239.72511 * 19 18 17 38 38 H 0.96695 * 114.00173 * 299.99712 * 20 19 18 39 39 H 1.48493 * 110.00220 * 58.67969 * 21 19 18 40 40 H 1.48501 * 109.99832 * 180.02562 * 21 19 18 41 41 H 1.07998 * 120.75259 * 180.02562 * 22 18 17 42 42 H 1.07997 * 120.46600 * 180.02562 * 23 22 18 43 43 H 1.09000 * 109.46602 * 60.00259 * 24 10 9 44 44 H 1.09000 * 109.47127 * 179.97438 * 24 10 9 45 45 H 1.09002 * 109.47521 * 60.00083 * 25 6 4 46 46 H 1.09001 * 109.47479 * 299.99979 * 25 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3447 1.5450 -0.0005 5 8 4.0808 0.5868 -0.0005 6 6 3.9206 2.9376 0.0000 7 1 3.5842 3.4703 -0.8895 8 6 3.4496 3.6838 1.2499 9 6 4.0337 5.0978 1.2502 10 6 5.5617 5.0184 1.2491 11 1 5.8985 4.4860 2.1386 12 7 6.1211 6.3724 1.2487 13 6 6.2852 7.0340 2.4115 14 8 5.9688 6.5076 3.4600 15 6 6.8515 8.4032 2.4112 16 7 7.1957 8.9727 1.2629 17 6 7.7011 10.1861 1.2187 18 6 7.8949 10.9189 2.3786 19 6 8.4699 12.3103 2.3123 20 8 7.5317 13.2399 2.8579 21 14 8.8219 12.7529 0.5372 22 6 7.5495 10.3618 3.6001 23 6 7.0181 9.0819 3.6163 24 6 6.0327 4.2722 -0.0008 25 6 5.4484 2.8576 -0.0001 26 1 -0.3633 0.5137 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3632 -1.0277 0.0005 29 1 1.8933 -0.5137 -0.8900 30 1 1.8935 -0.5138 0.8899 31 1 2.3611 3.7407 1.2505 32 1 3.7860 3.1511 2.1394 33 1 3.6985 5.6293 2.1409 34 1 3.6970 5.6302 0.3607 35 1 6.3734 6.7927 0.4118 36 1 7.9691 10.6170 0.2654 37 1 9.3955 12.3489 2.8867 38 1 6.6829 13.2596 2.3950 39 1 7.5738 12.6733 -0.2633 40 1 9.3899 14.1227 0.4583 41 1 7.6905 10.9130 4.5181 42 1 6.7375 8.6173 4.5500 43 1 5.6959 4.8047 -0.8903 44 1 7.1213 4.2160 -0.0018 45 1 5.7844 2.3258 -0.8903 46 1 5.7845 2.3251 0.8896 There are 62 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 62 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14589458_13287726.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 02:29:28 Heat of formation + Delta-G solvation = -126.145752 kcal Electronic energy + Delta-G solvation = -28287.308103 eV Core-core repulsion = 24143.091527 eV Total energy + Delta-G solvation = -4144.216575 eV No. of doubly occupied orbitals = 62 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.00370 -41.74549 -40.58310 -39.05539 -38.00167 -37.67673 -35.47352 -33.83216 -33.01347 -32.71854 -31.84398 -30.92973 -27.82493 -25.59455 -24.99134 -24.07098 -23.82716 -23.35201 -22.09300 -21.64057 -20.96186 -19.25230 -18.72984 -18.67077 -17.91422 -17.66062 -17.58945 -16.90307 -16.65382 -16.53691 -16.19218 -16.13534 -15.64689 -15.30630 -15.17798 -14.91077 -14.59891 -14.45042 -14.37942 -14.30184 -14.07349 -13.79743 -13.48964 -13.47152 -13.26528 -12.94985 -12.79403 -12.62943 -12.53029 -12.40515 -12.20480 -12.12260 -11.63282 -11.54199 -11.51920 -11.44288 -11.24587 -11.08608 -10.69405 -10.64783 -10.36619 -10.06884 -4.91368 -0.59033 0.08872 1.09366 1.25294 1.55776 1.61125 1.62270 1.95022 1.98493 2.67129 2.94856 3.33396 3.45500 3.50810 3.54375 3.61863 3.71435 3.79704 3.90986 3.94285 3.96784 4.02898 4.06926 4.13521 4.17157 4.28726 4.30956 4.31883 4.42328 4.49026 4.60747 4.61205 4.74646 4.82353 4.85883 4.88306 4.94439 4.99817 5.04112 5.07344 5.09242 5.14408 5.23971 5.26833 5.38465 5.42183 5.46806 6.29306 6.42986 6.63319 6.65549 7.06676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.053 3.947 3 O -0.360 6.360 4 C 0.464 3.536 5 O -0.540 6.540 6 C -0.075 4.075 7 H 0.137 0.863 8 C -0.101 4.101 9 C -0.120 4.120 10 C 0.140 3.860 11 H 0.070 0.930 12 N -0.694 5.694 13 C 0.569 3.431 14 O -0.567 6.567 15 C 0.064 3.936 16 N -0.457 5.457 17 C 0.102 3.898 18 C -0.140 4.140 19 C -0.079 4.079 20 O -0.544 6.544 21 Si 0.767 3.233 22 C -0.054 4.054 23 C -0.117 4.117 24 C -0.114 4.114 25 C -0.098 4.098 26 H 0.067 0.933 27 H 0.070 0.930 28 H 0.095 0.905 29 H 0.068 0.932 30 H 0.065 0.935 31 H 0.087 0.913 32 H 0.059 0.941 33 H 0.057 0.943 34 H 0.089 0.911 35 H 0.421 0.579 36 H 0.188 0.812 37 H 0.137 0.863 38 H 0.388 0.612 39 H -0.274 1.274 40 H -0.301 1.301 41 H 0.159 0.841 42 H 0.147 0.853 43 H 0.097 0.903 44 H 0.084 0.916 45 H 0.080 0.920 46 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.222 2.862 -4.591 5.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.020 4.020 3 O -0.277 6.277 4 C 0.308 3.692 5 O -0.430 6.430 6 C -0.094 4.094 7 H 0.155 0.845 8 C -0.140 4.140 9 C -0.159 4.159 10 C 0.035 3.965 11 H 0.088 0.912 12 N -0.344 5.344 13 C 0.354 3.646 14 O -0.445 6.445 15 C -0.073 4.073 16 N -0.168 5.168 17 C -0.058 4.058 18 C -0.143 4.143 19 C -0.188 4.188 20 O -0.353 6.353 21 Si 0.671 3.329 22 C -0.079 4.079 23 C -0.138 4.138 24 C -0.152 4.152 25 C -0.136 4.136 26 H 0.087 0.913 27 H 0.089 0.911 28 H 0.114 0.886 29 H 0.087 0.913 30 H 0.083 0.917 31 H 0.106 0.894 32 H 0.078 0.922 33 H 0.076 0.924 34 H 0.107 0.893 35 H 0.259 0.741 36 H 0.204 0.796 37 H 0.154 0.846 38 H 0.238 0.762 39 H -0.200 1.200 40 H -0.228 1.228 41 H 0.177 0.823 42 H 0.165 0.835 43 H 0.116 0.884 44 H 0.102 0.898 45 H 0.099 0.901 46 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 0.346 2.276 -4.869 5.386 hybrid contribution -0.850 0.570 1.193 1.572 sum -0.504 2.846 -3.677 4.677 Atomic orbital electron populations 1.21822 0.90697 1.04234 1.03744 1.23239 0.96921 0.79463 1.02392 1.86518 1.24341 1.33350 1.83479 1.24324 0.80528 0.93321 0.70983 1.90670 1.61113 1.44480 1.46754 1.21262 0.96624 0.88276 1.03209 0.84539 1.21422 1.01985 0.95011 0.95551 1.21844 0.94259 0.96447 1.03308 1.21145 0.93525 0.81765 1.00031 0.91153 1.45831 1.62772 1.16569 1.09240 1.18095 0.77697 0.84651 0.84114 1.90795 1.52340 1.68659 1.32741 1.21097 1.00658 0.95044 0.90510 1.67515 1.09550 1.11943 1.27817 1.23026 0.94521 0.89461 0.98796 1.21687 0.99643 0.98493 0.94441 1.25228 0.95244 0.84704 1.13662 1.86612 1.28673 1.60998 1.58968 0.94101 0.83752 0.82574 0.72425 1.21719 0.93490 0.93344 0.99370 1.22275 0.97038 0.95189 0.99329 1.21751 1.01844 0.94389 0.97177 1.21363 0.91478 0.97079 1.03667 0.91348 0.91112 0.88623 0.91329 0.91676 0.89408 0.92247 0.92425 0.89269 0.74095 0.79585 0.84579 0.76229 1.20048 1.22849 0.82298 0.83527 0.88443 0.89780 0.90106 0.92143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.45 10.29 71.98 0.74 1.19 16 2 C 0.05 0.09 6.19 71.98 0.45 0.54 16 3 O -0.36 -1.42 10.12 -51.46 -0.52 -1.94 16 4 C 0.46 2.25 7.26 71.24 0.52 2.77 16 5 O -0.54 -6.13 15.73 21.96 0.35 -5.78 16 6 C -0.07 0.13 2.63 -11.54 -0.03 0.10 16 7 H 0.14 -0.89 8.14 -2.39 -0.02 -0.91 16 8 C -0.10 0.15 5.13 30.59 0.16 0.31 16 9 C -0.12 0.19 5.50 30.59 0.17 0.36 16 10 C 0.14 -0.10 2.45 44.99 0.11 0.01 16 11 H 0.07 0.30 7.58 -2.39 -0.02 0.29 16 12 N -0.69 -0.03 5.07 -445.08 -2.26 -2.28 16 13 C 0.57 3.34 7.78 86.88 0.68 4.02 16 14 O -0.57 -7.20 15.99 -3.76 -0.06 -7.27 16 15 C 0.06 0.21 6.75 41.91 0.28 0.49 16 16 N -0.46 -0.10 9.54 -184.92 -1.76 -1.86 16 17 C 0.10 -0.37 9.84 84.82 0.83 0.46 16 18 C -0.14 0.55 5.40 -19.70 -0.11 0.45 16 19 C -0.08 0.45 2.83 71.24 0.20 0.65 16 20 O -0.54 1.15 12.78 -148.98 -1.90 -0.75 16 21 Si 0.77 -5.17 29.82 68.60 2.05 -3.13 16 22 C -0.05 0.11 9.76 22.45 0.22 0.32 16 23 C -0.12 -0.21 9.63 22.61 0.22 0.00 16 24 C -0.11 0.59 5.39 30.61 0.17 0.75 16 25 C -0.10 0.17 4.50 30.61 0.14 0.31 16 26 H 0.07 -0.19 8.14 -2.39 -0.02 -0.21 16 27 H 0.07 -0.23 8.14 -2.39 -0.02 -0.25 16 28 H 0.10 -0.56 8.14 -2.39 -0.02 -0.58 16 29 H 0.07 0.13 8.13 -2.39 -0.02 0.11 16 30 H 0.06 0.17 8.13 -2.39 -0.02 0.15 16 31 H 0.09 -0.20 8.11 -2.39 -0.02 -0.22 16 32 H 0.06 0.08 8.14 -2.39 -0.02 0.06 16 33 H 0.06 0.16 8.14 -2.39 -0.02 0.14 16 34 H 0.09 -0.44 8.14 -2.39 -0.02 -0.46 16 35 H 0.42 -1.60 7.93 -92.71 -0.74 -2.34 16 36 H 0.19 -1.70 4.89 -2.91 -0.01 -1.71 16 37 H 0.14 -1.04 7.96 -2.39 -0.02 -1.06 16 38 H 0.39 -2.91 8.70 -74.06 -0.64 -3.55 16 39 H -0.27 0.93 7.11 99.48 0.71 1.64 16 40 H -0.30 -0.53 7.11 99.48 0.71 0.18 16 41 H 0.16 -0.75 8.06 -2.91 -0.02 -0.77 16 42 H 0.15 0.34 7.64 -2.91 -0.02 0.32 16 43 H 0.10 -0.88 8.14 -2.39 -0.02 -0.90 16 44 H 0.08 -0.45 8.14 -2.39 -0.02 -0.47 16 45 H 0.08 -0.10 8.10 -2.39 -0.02 -0.12 16 46 H 0.06 0.12 8.10 -2.39 -0.02 0.10 16 Total: 0.00 -21.13 381.21 0.29 -20.84 By element: Atomic # 1 Polarization: -10.23 SS G_CDS: -0.33 Total: -10.56 kcal Atomic # 6 Polarization: 8.00 SS G_CDS: 4.74 Total: 12.73 kcal Atomic # 7 Polarization: -0.13 SS G_CDS: -4.02 Total: -4.15 kcal Atomic # 8 Polarization: -13.60 SS G_CDS: -2.14 Total: -15.74 kcal Atomic # 14 Polarization: -5.17 SS G_CDS: 2.05 Total: -3.13 kcal Total: -21.13 0.29 -20.84 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14589458_13287726.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.305 kcal (2) G-P(sol) polarization free energy of solvation -21.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.841 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds