Wall clock time and date at job start Sun Mar 7 2021 02:29:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.45199 * 109.47075 * 2 1 4 4 C 1.34230 * 116.99614 * 179.97438 * 3 2 1 5 5 O 1.20824 * 120.00179 * 0.02562 * 4 3 2 6 6 C 1.50706 * 119.99717 * 179.97438 * 4 3 2 7 7 H 1.09003 * 109.46535 * 60.00663 * 6 4 3 8 8 C 1.53003 * 109.47116 * 180.02562 * 6 4 3 9 9 C 1.52994 * 109.47081 * 180.02562 * 8 6 4 10 10 C 1.52997 * 109.47125 * 299.99933 * 9 8 6 11 11 H 1.09003 * 109.47546 * 299.99948 * 10 9 8 12 12 N 1.46500 * 109.47223 * 180.02562 * 10 9 8 13 13 C 1.34780 * 120.00050 * 155.00040 * 12 10 9 14 14 O 1.21583 * 119.99762 * 0.02562 * 13 12 10 15 15 C 1.47609 * 120.00133 * 179.97438 * 13 12 10 16 16 C 1.39710 * 120.08845 * 180.02562 * 15 13 12 17 17 C 1.37720 * 119.90858 * 179.97438 * 16 15 13 18 18 C 1.50700 * 119.95365 * 179.97438 * 17 16 15 19 19 O 1.42894 * 109.47157 * 105.00177 * 18 17 16 20 20 Si 1.86296 * 109.47327 * 344.99923 * 18 17 16 21 21 C 1.38978 * 120.09193 * 359.97438 * 17 16 15 22 22 O 1.35704 * 119.91113 * 180.02562 * 21 17 16 23 23 C 1.39017 * 120.17464 * 359.97438 * 21 17 16 24 24 C 1.50696 * 119.95689 * 180.02562 * 23 21 17 25 25 C 1.37687 * 120.08491 * 359.79425 * 23 21 17 26 26 C 1.53003 * 109.47087 * 60.00071 * 10 9 8 27 27 C 1.52994 * 109.47081 * 299.99956 * 26 10 9 28 28 H 1.08996 * 109.47853 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47153 * 300.00058 * 1 2 3 30 30 H 1.08998 * 109.47533 * 59.99688 * 1 2 3 31 31 H 1.09002 * 109.47153 * 239.99942 * 2 1 3 32 32 H 1.09001 * 109.46832 * 120.00132 * 2 1 3 33 33 H 1.09000 * 109.47151 * 300.00236 * 8 6 4 34 34 H 1.09003 * 109.46860 * 60.00013 * 8 6 4 35 35 H 1.09003 * 109.47577 * 60.00068 * 9 8 6 36 36 H 1.09005 * 109.47167 * 180.02562 * 9 8 6 37 37 H 0.96993 * 120.00057 * 334.99580 * 12 10 9 38 38 H 1.08001 * 120.04280 * 359.97438 * 16 15 13 39 39 H 1.09007 * 109.47244 * 225.00038 * 18 17 16 40 40 H 0.96706 * 114.00144 * 299.99912 * 19 18 17 41 41 H 1.48505 * 110.00339 * 179.97438 * 20 18 17 42 42 H 1.48501 * 110.00246 * 301.31893 * 20 18 17 43 43 H 0.96698 * 114.00193 * 89.99647 * 22 21 17 44 44 H 1.08992 * 109.47593 * 90.00266 * 24 23 21 45 45 H 1.09005 * 109.47107 * 210.00897 * 24 23 21 46 46 H 1.09006 * 109.46678 * 329.99895 * 24 23 21 47 47 H 1.08005 * 120.03833 * 180.22783 * 25 23 21 48 48 H 1.09003 * 109.46860 * 60.00328 * 26 10 9 49 49 H 1.09000 * 109.47151 * 180.02562 * 26 10 9 50 50 H 1.09003 * 109.47577 * 299.99932 * 27 26 10 51 51 H 1.09005 * 109.47167 * 179.97438 * 27 26 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5447 0.0005 5 8 4.0807 0.5865 0.0005 6 6 3.9207 2.9374 0.0000 7 1 3.5844 3.4699 0.8896 8 6 5.4487 2.8573 0.0001 9 6 6.0335 4.2711 0.0002 10 6 5.5620 5.0180 -1.2490 11 1 5.8981 4.4859 -2.1391 12 7 6.1225 6.3716 -1.2493 13 6 6.2861 7.0330 -2.4122 14 8 5.9682 6.5064 -3.4609 15 6 6.8503 8.3970 -2.4124 16 6 7.0202 9.0845 -3.6167 17 6 7.5464 10.3572 -3.6126 18 6 7.7307 11.0995 -4.9111 19 8 6.7200 12.1021 -5.0342 20 14 7.5967 9.9045 -6.3340 21 6 7.9078 10.9579 -2.4125 22 8 8.4254 12.2124 -2.4127 23 6 7.7392 10.2776 -1.2120 24 6 8.1321 10.9339 0.0864 25 6 7.2094 9.0068 -1.2073 26 6 4.0341 5.0981 -1.2492 27 6 3.4493 3.6843 -1.2493 28 1 -0.3635 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 5.7846 2.3255 0.8903 34 1 5.7846 2.3247 -0.8897 35 1 5.6975 4.8033 0.8902 36 1 7.1220 4.2140 -0.0002 37 1 6.3757 6.7918 -0.4126 38 1 6.7393 8.6185 -4.5496 39 1 8.7135 11.5708 -4.9239 40 1 5.8179 11.7537 -5.0302 41 1 7.7760 10.6242 -7.6205 42 1 8.6221 8.8387 -6.2006 43 1 7.7620 12.9117 -2.3359 44 1 7.2807 11.4830 0.4883 45 1 8.4419 10.1705 0.8002 46 1 8.9583 11.6228 -0.0901 47 1 7.0754 8.4803 -0.2738 48 1 3.6981 5.6303 -0.3592 49 1 3.6982 5.6299 -2.1394 50 1 3.7853 3.1521 -2.1392 51 1 2.3608 3.7414 -1.2489 There are 68 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 68 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14589458_13287732.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 02:29:37 Heat of formation + Delta-G solvation = -186.788866 kcal Electronic energy + Delta-G solvation = -32866.169122 eV Core-core repulsion = 28310.528964 eV Total energy + Delta-G solvation = -4555.640158 eV No. of doubly occupied orbitals = 68 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 364.181 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.92286 -41.63956 -40.62027 -39.07233 -37.84293 -37.69585 -37.43998 -35.43841 -33.96209 -32.81814 -32.15304 -31.81043 -30.46137 -27.97059 -26.90813 -25.85327 -24.51660 -23.81461 -23.46204 -22.15629 -21.82524 -21.47760 -20.77283 -19.54181 -18.84467 -18.63677 -18.06297 -17.70706 -17.64018 -17.39460 -16.78325 -16.44551 -16.19345 -16.10986 -15.76926 -15.54501 -15.24811 -15.10442 -14.88486 -14.65731 -14.53278 -14.36045 -14.18227 -14.09193 -13.85730 -13.79140 -13.47494 -13.28540 -13.24003 -12.93948 -12.92702 -12.77481 -12.72153 -12.51171 -12.39433 -12.31247 -12.23766 -12.16168 -11.61910 -11.59974 -11.52152 -11.44229 -11.33529 -10.99956 -10.49841 -10.16304 -9.94525 -9.63123 -5.07825 -0.38046 0.09085 1.10852 1.19731 1.52864 1.64028 1.65748 1.85408 2.05183 2.58815 3.15122 3.39804 3.46074 3.52878 3.57657 3.62917 3.67667 3.75012 3.93102 3.97784 4.04040 4.04978 4.10808 4.17834 4.21122 4.31400 4.32967 4.34225 4.38558 4.45755 4.46726 4.61750 4.67246 4.74120 4.78005 4.82766 4.84403 4.89342 4.95402 5.05938 5.06630 5.09253 5.11367 5.13604 5.16893 5.21827 5.28314 5.30915 5.34309 5.44236 5.49947 5.61713 6.49503 6.66858 6.69055 6.72687 7.16734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.053 3.947 3 O -0.360 6.360 4 C 0.462 3.538 5 O -0.542 6.542 6 C -0.074 4.074 7 H 0.139 0.861 8 C -0.099 4.099 9 C -0.114 4.114 10 C 0.141 3.859 11 H 0.066 0.934 12 N -0.706 5.706 13 C 0.560 3.440 14 O -0.573 6.573 15 C -0.150 4.150 16 C -0.057 4.057 17 C -0.160 4.160 18 C -0.050 4.050 19 O -0.546 6.546 20 Si 0.746 3.254 21 C 0.152 3.848 22 O -0.501 6.501 23 C -0.121 4.121 24 C -0.112 4.112 25 C -0.053 4.053 26 C -0.119 4.119 27 C -0.103 4.103 28 H 0.094 0.906 29 H 0.070 0.930 30 H 0.068 0.932 31 H 0.064 0.936 32 H 0.068 0.932 33 H 0.078 0.922 34 H 0.056 0.944 35 H 0.101 0.899 36 H 0.082 0.918 37 H 0.416 0.584 38 H 0.141 0.859 39 H 0.107 0.893 40 H 0.395 0.605 41 H -0.287 1.287 42 H -0.298 1.298 43 H 0.413 0.587 44 H 0.086 0.914 45 H 0.086 0.914 46 H 0.066 0.934 47 H 0.166 0.834 48 H 0.093 0.907 49 H 0.059 0.941 50 H 0.055 0.945 51 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.026 2.602 7.602 9.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.020 4.020 3 O -0.276 6.276 4 C 0.307 3.693 5 O -0.432 6.432 6 C -0.093 4.093 7 H 0.156 0.844 8 C -0.137 4.137 9 C -0.152 4.152 10 C 0.037 3.963 11 H 0.084 0.916 12 N -0.358 5.358 13 C 0.348 3.652 14 O -0.453 6.453 15 C -0.153 4.153 16 C -0.075 4.075 17 C -0.161 4.161 18 C -0.162 4.162 19 O -0.354 6.354 20 Si 0.653 3.347 21 C 0.107 3.893 22 O -0.315 6.315 23 C -0.122 4.122 24 C -0.169 4.169 25 C -0.072 4.072 26 C -0.158 4.158 27 C -0.141 4.141 28 H 0.113 0.887 29 H 0.089 0.911 30 H 0.087 0.913 31 H 0.082 0.918 32 H 0.086 0.914 33 H 0.097 0.903 34 H 0.075 0.925 35 H 0.120 0.880 36 H 0.101 0.899 37 H 0.254 0.746 38 H 0.158 0.842 39 H 0.124 0.876 40 H 0.245 0.755 41 H -0.214 1.214 42 H -0.226 1.226 43 H 0.273 0.727 44 H 0.105 0.895 45 H 0.104 0.896 46 H 0.085 0.915 47 H 0.183 0.817 48 H 0.111 0.889 49 H 0.078 0.922 50 H 0.074 0.926 51 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -3.634 1.657 6.123 7.311 hybrid contribution 0.343 0.151 0.201 0.425 sum -3.292 1.808 6.324 7.355 Atomic orbital electron populations 1.21819 0.90666 1.04213 1.03788 1.23229 0.96939 0.79510 1.02326 1.86516 1.24351 1.33278 1.83471 1.24395 0.80519 0.93431 0.70942 1.90671 1.61156 1.44563 1.46815 1.21271 0.96506 0.88155 1.03352 0.84355 1.21358 0.91600 0.97351 1.03438 1.21753 1.01728 0.94303 0.97436 1.21065 0.93557 0.81956 0.99722 0.91605 1.45815 1.64184 1.16837 1.08939 1.18325 0.77416 0.85517 0.83917 1.90796 1.52276 1.69479 1.32788 1.19837 1.06035 0.94712 0.94689 1.21000 0.95642 0.92686 0.98171 1.20601 1.03166 0.95852 0.96440 1.24747 0.94601 0.97111 0.99703 1.86472 1.18847 1.33966 1.96118 0.94031 0.89602 0.75905 0.75129 1.18498 0.92866 0.86766 0.91188 1.84623 1.37359 1.13694 1.95775 1.20451 1.00268 0.95622 0.95856 1.20766 1.02461 1.01342 0.92285 1.21390 0.94532 0.93662 0.97606 1.21844 0.94161 0.96162 1.03605 1.21434 1.02015 0.95312 0.95342 0.88694 0.91069 0.91295 0.91764 0.91389 0.90302 0.92483 0.88023 0.89916 0.74571 0.84219 0.87560 0.75473 1.21431 1.22553 0.72659 0.89503 0.89560 0.91501 0.81676 0.88858 0.92179 0.92567 0.89411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.54 10.29 71.98 0.74 1.28 16 2 C 0.05 0.06 6.19 71.98 0.45 0.50 16 3 O -0.36 -1.09 10.12 -51.42 -0.52 -1.61 16 4 C 0.46 1.82 7.26 71.24 0.52 2.34 16 5 O -0.54 -5.82 15.73 21.97 0.35 -5.47 16 6 C -0.07 0.24 2.63 -11.54 -0.03 0.21 16 7 H 0.14 -1.17 8.14 -2.39 -0.02 -1.19 16 8 C -0.10 0.31 4.49 30.59 0.14 0.45 16 9 C -0.11 0.89 5.39 30.59 0.16 1.06 16 10 C 0.14 -0.50 2.45 44.99 0.11 -0.39 16 11 H 0.07 0.17 7.58 -2.39 -0.02 0.16 16 12 N -0.71 3.32 5.03 -445.62 -2.24 1.08 16 13 C 0.56 1.35 7.73 86.72 0.67 2.02 16 14 O -0.57 -6.15 16.00 -3.98 -0.06 -6.21 16 15 C -0.15 -0.01 5.87 -20.08 -0.12 -0.13 16 16 C -0.06 -0.11 8.20 22.50 0.18 0.07 16 17 C -0.16 -0.21 5.27 -19.81 -0.10 -0.31 16 18 C -0.05 -0.08 2.37 71.24 0.17 0.09 16 19 O -0.55 0.21 12.88 -148.98 -1.92 -1.71 16 20 Si 0.75 1.91 29.91 68.60 2.05 3.96 16 21 C 0.15 0.04 6.66 22.63 0.15 0.19 16 22 O -0.50 0.08 11.84 -90.24 -1.07 -0.99 16 23 C -0.12 0.39 5.89 -19.81 -0.12 0.27 16 24 C -0.11 0.79 9.78 71.23 0.70 1.49 16 25 C -0.05 0.27 9.18 22.51 0.21 0.48 16 26 C -0.12 0.53 5.50 30.59 0.17 0.70 16 27 C -0.10 0.33 5.14 30.59 0.16 0.49 16 28 H 0.09 -0.60 8.14 -2.39 -0.02 -0.62 16 29 H 0.07 -0.29 8.14 -2.39 -0.02 -0.31 16 30 H 0.07 -0.24 8.14 -2.39 -0.02 -0.26 16 31 H 0.06 0.14 8.13 -2.39 -0.02 0.12 16 32 H 0.07 0.09 8.13 -2.39 -0.02 0.07 16 33 H 0.08 -0.19 8.10 -2.39 -0.02 -0.21 16 34 H 0.06 0.07 8.10 -2.39 -0.02 0.05 16 35 H 0.10 -1.29 8.14 -2.39 -0.02 -1.31 16 36 H 0.08 -0.64 8.14 -2.38 -0.02 -0.66 16 37 H 0.42 -4.80 6.62 -92.71 -0.61 -5.41 16 38 H 0.14 0.30 4.70 -2.91 -0.01 0.28 16 39 H 0.11 0.44 7.82 -2.38 -0.02 0.42 16 40 H 0.40 -3.27 8.70 -74.05 -0.64 -3.91 16 41 H -0.29 -2.45 7.11 99.48 0.71 -1.74 16 42 H -0.30 -2.88 7.11 99.48 0.71 -2.17 16 43 H 0.41 -3.02 9.06 -74.06 -0.67 -3.69 16 44 H 0.09 -0.81 8.14 -2.39 -0.02 -0.83 16 45 H 0.09 -0.85 8.08 -2.38 -0.02 -0.87 16 46 H 0.07 -0.29 7.52 -2.38 -0.02 -0.31 16 47 H 0.17 -2.08 6.40 -2.91 -0.02 -2.10 16 48 H 0.09 -0.80 8.14 -2.39 -0.02 -0.82 16 49 H 0.06 0.00 8.14 -2.39 -0.02 -0.02 16 50 H 0.06 0.02 8.14 -2.39 -0.02 0.00 16 51 H 0.09 -0.34 8.11 -2.38 -0.02 -0.36 16 Total: 0.00 -25.66 414.50 -0.18 -25.84 By element: Atomic # 1 Polarization: -24.79 SS G_CDS: -0.91 Total: -25.70 kcal Atomic # 6 Polarization: 6.66 SS G_CDS: 4.15 Total: 10.81 kcal Atomic # 7 Polarization: 3.32 SS G_CDS: -2.24 Total: 1.08 kcal Atomic # 8 Polarization: -12.76 SS G_CDS: -3.23 Total: -15.99 kcal Atomic # 14 Polarization: 1.91 SS G_CDS: 2.05 Total: 3.96 kcal Total: -25.66 -0.18 -25.84 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14589458_13287732.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -160.952 kcal (2) G-P(sol) polarization free energy of solvation -25.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -186.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -25.837 kcal (6) G-S(sol) free energy of system = (1) + (5) -186.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds