Wall clock time and date at job start Sun Mar 7 2021 02:29:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.45203 * 109.46837 * 2 1 4 4 C 1.34229 * 116.99579 * 180.02562 * 3 2 1 5 5 O 1.20824 * 120.00177 * 0.02562 * 4 3 2 6 6 C 1.50703 * 119.99682 * 179.97438 * 4 3 2 7 7 H 1.09001 * 109.46980 * 299.99944 * 6 4 3 8 8 C 1.53006 * 109.47126 * 59.99713 * 6 4 3 9 9 C 1.52997 * 109.47127 * 179.97438 * 8 6 4 10 10 C 1.53000 * 109.47060 * 300.00449 * 9 8 6 11 11 H 1.09001 * 109.47194 * 299.99650 * 10 9 8 12 12 N 1.46499 * 109.46840 * 180.02562 * 10 9 8 13 13 C 1.34782 * 120.00074 * 155.00031 * 12 10 9 14 14 O 1.21546 * 119.99820 * 359.97438 * 13 12 10 15 15 C 1.47837 * 119.99938 * 179.97438 * 13 12 10 16 16 C 1.39523 * 120.55995 * 359.71994 * 15 13 12 17 17 N 1.31695 * 120.56312 * 179.68097 * 16 15 13 18 18 C 1.31926 * 121.88310 * 0.63409 * 17 16 15 19 19 C 1.38352 * 121.07722 * 359.65287 * 18 17 16 20 20 C 1.50699 * 120.34811 * 180.02562 * 19 18 17 21 21 O 1.42904 * 109.46869 * 119.97972 * 20 19 18 22 22 Si 1.86298 * 109.47249 * 359.97438 * 20 19 18 23 23 C 1.38356 * 119.30335 * 0.02562 * 19 18 17 24 24 C 1.52996 * 109.47328 * 60.00126 * 10 9 8 25 25 C 1.52997 * 109.47084 * 179.97438 * 6 4 3 26 26 H 1.08998 * 109.46790 * 179.97438 * 1 2 3 27 27 H 1.08993 * 109.47437 * 299.99801 * 1 2 3 28 28 H 1.09000 * 109.47218 * 59.99963 * 1 2 3 29 29 H 1.09003 * 109.46711 * 240.00428 * 2 1 3 30 30 H 1.09000 * 109.47218 * 120.00037 * 2 1 3 31 31 H 1.08998 * 109.46505 * 59.99690 * 8 6 4 32 32 H 1.08996 * 109.46884 * 300.00571 * 8 6 4 33 33 H 1.09002 * 109.47153 * 180.02562 * 9 8 6 34 34 H 1.09001 * 109.46832 * 60.00321 * 9 8 6 35 35 H 0.97002 * 120.00427 * 334.99530 * 12 10 9 36 36 H 1.07995 * 119.71764 * 0.02562 * 16 15 13 37 37 H 1.07998 * 119.46296 * 179.67816 * 18 17 16 38 38 H 1.08997 * 109.47379 * 239.97939 * 20 19 18 39 39 H 0.96699 * 114.00479 * 299.99846 * 21 20 19 40 40 H 1.48499 * 109.99909 * 58.67892 * 22 20 19 41 41 H 1.48497 * 110.00118 * 179.97438 * 22 20 19 42 42 H 1.07998 * 120.85755 * 180.02562 * 23 19 18 43 43 H 1.08992 * 109.47554 * 59.99639 * 24 10 9 44 44 H 1.09004 * 109.47108 * 179.97438 * 24 10 9 45 45 H 1.09002 * 109.47045 * 60.00033 * 25 6 4 46 46 H 1.09001 * 109.47375 * 299.99958 * 25 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5449 -0.0005 5 8 4.0807 0.5867 -0.0015 6 6 3.9207 2.9375 -0.0012 7 1 3.5844 3.4693 -0.8912 8 6 3.4495 3.6848 1.2481 9 6 4.0348 5.0984 1.2477 10 6 5.5626 5.0178 1.2475 11 1 5.8986 4.4858 2.1375 12 7 6.1230 6.3714 1.2478 13 6 7.3583 6.5893 1.7410 14 8 8.0071 5.6628 2.1859 15 6 7.9239 7.9552 1.7408 16 6 7.1916 9.0262 1.2277 17 7 7.6929 10.2440 1.2332 18 6 8.8977 10.4994 1.7061 19 6 9.6891 9.4912 2.2270 20 6 11.0627 9.8016 2.7633 21 8 11.1281 9.4388 4.1440 22 14 11.4024 11.6245 2.5834 23 6 9.2060 8.1949 2.2502 24 6 6.0338 4.2706 -0.0017 25 6 5.4486 2.8574 -0.0010 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 -0.3634 0.5138 -0.8900 29 1 1.8933 -0.5138 -0.8901 30 1 1.8934 -0.5138 0.8900 31 1 3.7857 3.1529 2.1380 32 1 2.3610 3.7417 1.2484 33 1 3.6994 5.6307 2.1379 34 1 3.6988 5.6305 0.3577 35 1 5.6051 7.1109 0.8930 36 1 6.2030 8.8560 0.8276 37 1 9.2723 11.5122 1.6866 38 1 11.8077 9.2363 2.2035 39 1 10.4914 9.9041 4.7036 40 1 10.3749 12.4073 3.3160 41 1 12.7539 11.9437 3.1094 42 1 9.8022 7.3887 2.6515 43 1 5.6979 4.8026 -0.8917 44 1 7.1223 4.2136 -0.0021 45 1 5.7846 2.3249 -0.8908 46 1 5.7845 2.3257 0.8892 There are 62 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 62 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14589458_13287814.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 02:29:46 Heat of formation + Delta-G solvation = -126.828148 kcal Electronic energy + Delta-G solvation = -28366.934616 eV Core-core repulsion = 24222.688450 eV Total energy + Delta-G solvation = -4144.246166 eV No. of doubly occupied orbitals = 62 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.03509 -41.75670 -40.60744 -39.04177 -38.08402 -37.69492 -35.53437 -33.77465 -33.34851 -32.66995 -31.84644 -30.77560 -27.29799 -26.36189 -24.96216 -24.01277 -23.73147 -23.51518 -21.99987 -21.60823 -20.88820 -19.27200 -18.75211 -18.28082 -17.99796 -17.78664 -17.64187 -17.52966 -16.85018 -16.53647 -16.18046 -16.01576 -15.61893 -15.28015 -15.05539 -15.02891 -14.66390 -14.48198 -14.38661 -14.22564 -14.09948 -13.78522 -13.51990 -13.44004 -13.25645 -12.93738 -12.83186 -12.79656 -12.54021 -12.39127 -12.18838 -12.11655 -11.66867 -11.56389 -11.52393 -11.38192 -11.28145 -11.09318 -10.71837 -10.56123 -10.37546 -10.11520 -4.94853 -0.56615 -0.02709 1.09401 1.22060 1.58010 1.61169 1.66269 1.91221 1.98883 2.63613 3.11265 3.31660 3.38593 3.44447 3.60154 3.61646 3.66080 3.72455 3.76306 3.89540 3.96150 4.03607 4.06976 4.11241 4.17331 4.26980 4.29889 4.31771 4.33593 4.42110 4.53536 4.59905 4.75752 4.82977 4.84292 4.89098 4.89614 4.96501 5.03482 5.09170 5.10394 5.15379 5.24273 5.25069 5.32743 5.41346 5.46043 6.38734 6.40118 6.65433 6.66163 7.06433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.053 3.947 3 O -0.356 6.356 4 C 0.462 3.538 5 O -0.545 6.545 6 C -0.074 4.074 7 H 0.140 0.860 8 C -0.104 4.104 9 C -0.114 4.114 10 C 0.142 3.858 11 H 0.065 0.935 12 N -0.702 5.702 13 C 0.564 3.436 14 O -0.576 6.576 15 C -0.197 4.197 16 C 0.149 3.851 17 N -0.493 5.493 18 C 0.130 3.870 19 C -0.174 4.174 20 C -0.084 4.084 21 O -0.548 6.548 22 Si 0.776 3.224 23 C -0.004 4.004 24 C -0.120 4.120 25 C -0.098 4.098 26 H 0.094 0.906 27 H 0.070 0.930 28 H 0.071 0.929 29 H 0.065 0.935 30 H 0.064 0.936 31 H 0.058 0.942 32 H 0.099 0.901 33 H 0.089 0.911 34 H 0.104 0.896 35 H 0.418 0.582 36 H 0.196 0.804 37 H 0.184 0.816 38 H 0.128 0.872 39 H 0.387 0.613 40 H -0.272 1.272 41 H -0.299 1.299 42 H 0.134 0.866 43 H 0.094 0.906 44 H 0.051 0.949 45 H 0.068 0.932 46 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.503 5.861 -3.953 9.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.021 4.021 3 O -0.273 6.273 4 C 0.307 3.693 5 O -0.435 6.435 6 C -0.093 4.093 7 H 0.158 0.842 8 C -0.142 4.142 9 C -0.152 4.152 10 C 0.037 3.963 11 H 0.083 0.917 12 N -0.354 5.354 13 C 0.351 3.649 14 O -0.456 6.456 15 C -0.202 4.202 16 C -0.009 4.009 17 N -0.200 5.200 18 C -0.026 4.026 19 C -0.177 4.177 20 C -0.192 4.192 21 O -0.356 6.356 22 Si 0.680 3.320 23 C -0.030 4.030 24 C -0.159 4.159 25 C -0.137 4.137 26 H 0.112 0.888 27 H 0.089 0.911 28 H 0.090 0.910 29 H 0.084 0.916 30 H 0.082 0.918 31 H 0.077 0.923 32 H 0.118 0.882 33 H 0.108 0.892 34 H 0.123 0.877 35 H 0.257 0.743 36 H 0.212 0.788 37 H 0.200 0.800 38 H 0.146 0.854 39 H 0.237 0.763 40 H -0.198 1.198 41 H -0.227 1.227 42 H 0.152 0.848 43 H 0.112 0.888 44 H 0.070 0.930 45 H 0.087 0.913 46 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -5.762 5.922 -3.786 9.089 hybrid contribution 0.375 -1.615 1.489 2.228 sum -5.387 4.307 -2.297 7.270 Atomic orbital electron populations 1.21816 0.90493 1.04211 1.03882 1.23237 0.97028 0.79526 1.02258 1.86508 1.24109 1.33224 1.83465 1.24393 0.80572 0.93396 0.70928 1.90680 1.61275 1.44685 1.46860 1.21260 0.95614 0.88367 1.04009 0.84227 1.21474 1.02557 0.95165 0.94988 1.21773 0.91084 0.96840 1.05506 1.21089 0.94720 0.82004 0.98442 0.91661 1.45800 1.15900 1.11450 1.62252 1.18232 0.81928 0.87646 0.77081 1.90809 1.60974 1.45562 1.48258 1.21014 0.97397 0.94901 1.06919 1.23497 0.99833 0.86170 0.91423 1.67824 1.13283 1.22650 1.16284 1.23218 0.88963 0.99806 0.90598 1.21354 0.99253 0.93996 1.03063 1.25306 0.95017 1.15366 0.83551 1.86615 1.62832 1.68263 1.17902 0.94088 0.76965 0.70626 0.90340 1.21637 0.93493 0.97048 0.90858 1.21837 1.00255 0.94782 0.98989 1.21318 0.92379 0.97153 1.02822 0.88777 0.91090 0.91042 0.91608 0.91762 0.92268 0.88249 0.89226 0.87744 0.74309 0.78758 0.79990 0.85390 0.76310 1.19830 1.22693 0.84846 0.88792 0.93005 0.91337 0.92866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.61 10.29 71.98 0.74 1.35 16 2 C 0.05 0.05 6.19 71.98 0.45 0.50 16 3 O -0.36 -0.91 10.12 -51.41 -0.52 -1.43 16 4 C 0.46 1.99 7.26 71.24 0.52 2.51 16 5 O -0.55 -6.56 15.73 21.97 0.35 -6.22 16 6 C -0.07 0.22 2.63 -11.54 -0.03 0.19 16 7 H 0.14 -1.14 8.14 -2.39 -0.02 -1.16 16 8 C -0.10 0.63 5.14 30.60 0.16 0.78 16 9 C -0.11 1.07 5.39 30.59 0.16 1.23 16 10 C 0.14 -0.45 2.45 44.99 0.11 -0.34 16 11 H 0.07 0.21 7.58 -2.39 -0.02 0.19 16 12 N -0.70 3.15 5.03 -445.42 -2.24 0.91 16 13 C 0.56 1.90 7.75 86.78 0.67 2.58 16 14 O -0.58 -7.50 16.08 -3.86 -0.06 -7.56 16 15 C -0.20 -0.14 5.89 -19.99 -0.12 -0.26 16 16 C 0.15 -0.56 10.71 85.02 0.91 0.35 16 17 N -0.49 0.51 10.35 -194.76 -2.01 -1.50 16 18 C 0.13 -0.34 9.84 84.71 0.83 0.49 16 19 C -0.17 0.19 5.39 -19.81 -0.11 0.09 16 20 C -0.08 0.17 2.83 71.24 0.20 0.38 16 21 O -0.55 -1.08 12.78 -148.98 -1.90 -2.98 16 22 Si 0.78 -3.72 29.82 68.60 2.05 -1.68 16 23 C 0.00 -0.01 9.31 22.73 0.21 0.20 16 24 C -0.12 0.24 5.50 30.58 0.17 0.41 16 25 C -0.10 -0.05 4.49 30.58 0.14 0.09 16 26 H 0.09 -0.62 8.14 -2.39 -0.02 -0.64 16 27 H 0.07 -0.31 8.14 -2.39 -0.02 -0.33 16 28 H 0.07 -0.32 8.14 -2.39 -0.02 -0.34 16 29 H 0.07 0.12 8.13 -2.39 -0.02 0.10 16 30 H 0.06 0.13 8.13 -2.39 -0.02 0.11 16 31 H 0.06 -0.16 8.14 -2.39 -0.02 -0.18 16 32 H 0.10 -0.79 8.11 -2.39 -0.02 -0.81 16 33 H 0.09 -0.93 8.14 -2.39 -0.02 -0.95 16 34 H 0.10 -1.47 8.14 -2.39 -0.02 -1.49 16 35 H 0.42 -5.00 6.67 -92.71 -0.62 -5.62 16 36 H 0.20 -2.32 6.42 -2.91 -0.02 -2.34 16 37 H 0.18 -1.38 4.88 -2.91 -0.01 -1.40 16 38 H 0.13 -0.41 7.96 -2.39 -0.02 -0.43 16 39 H 0.39 -1.56 8.70 -74.06 -0.64 -2.20 16 40 H -0.27 0.52 7.11 99.48 0.71 1.23 16 41 H -0.30 -1.02 7.11 99.48 0.71 -0.31 16 42 H 0.13 0.81 7.74 -2.91 -0.02 0.79 16 43 H 0.09 -0.62 8.14 -2.39 -0.02 -0.64 16 44 H 0.05 0.19 8.14 -2.38 -0.02 0.17 16 45 H 0.07 0.17 8.10 -2.39 -0.02 0.15 16 46 H 0.05 0.28 8.10 -2.39 -0.02 0.26 16 Total: 0.00 -26.24 378.98 0.45 -25.78 By element: Atomic # 1 Polarization: -15.65 SS G_CDS: -0.21 Total: -15.86 kcal Atomic # 6 Polarization: 5.53 SS G_CDS: 5.02 Total: 10.54 kcal Atomic # 7 Polarization: 3.66 SS G_CDS: -4.26 Total: -0.60 kcal Atomic # 8 Polarization: -16.05 SS G_CDS: -2.14 Total: -18.19 kcal Atomic # 14 Polarization: -3.72 SS G_CDS: 2.05 Total: -1.68 kcal Total: -26.24 0.45 -25.78 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14589458_13287814.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.043 kcal (2) G-P(sol) polarization free energy of solvation -26.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -25.785 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds