Wall clock time and date at job start Sun Mar 7 2021 02:29:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.45203 * 109.46837 * 2 1 4 4 C 1.34226 * 116.99798 * 180.02562 * 3 2 1 5 5 O 1.20824 * 119.99959 * 359.97438 * 4 3 2 6 6 C 1.50703 * 119.99900 * 180.02562 * 4 3 2 7 7 H 1.09001 * 109.46980 * 59.99650 * 6 4 3 8 8 C 1.53000 * 109.46912 * 179.97438 * 6 4 3 9 9 C 1.52997 * 109.47060 * 179.97438 * 8 6 4 10 10 C 1.53006 * 109.47127 * 300.00449 * 9 8 6 11 11 H 1.09001 * 109.47002 * 299.99574 * 10 9 8 12 12 N 1.46504 * 109.46883 * 180.02562 * 10 9 8 13 13 C 1.34773 * 120.00111 * 84.99828 * 12 10 9 14 14 O 1.21607 * 119.99961 * 359.97438 * 13 12 10 15 15 C 1.47373 * 119.99874 * 179.97438 * 13 12 10 16 16 C 1.36420 * 127.19701 * 180.02562 * 15 13 12 17 17 C 1.50707 * 125.79428 * 359.96506 * 16 15 13 18 18 O 1.33645 * 108.40252 * 179.97438 * 16 15 13 19 19 C 1.34213 * 110.90803 * 359.97438 * 18 16 15 20 20 C 1.50699 * 125.43923 * 179.97438 * 19 18 16 21 21 O 1.42903 * 109.47543 * 244.98077 * 20 19 18 22 22 Si 1.86300 * 109.47040 * 4.98136 * 20 19 18 23 23 C 1.34179 * 109.12729 * 359.74984 * 19 18 16 24 24 C 1.52997 * 109.47164 * 59.99836 * 10 9 8 25 25 C 1.52996 * 109.46946 * 299.99539 * 6 4 3 26 26 H 1.08998 * 109.46790 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47218 * 300.00037 * 1 2 3 28 28 H 1.08993 * 109.46973 * 59.99936 * 1 2 3 29 29 H 1.09000 * 109.47218 * 239.99963 * 2 1 3 30 30 H 1.09003 * 109.46958 * 120.00063 * 2 1 3 31 31 H 1.09002 * 109.47398 * 300.00078 * 8 6 4 32 32 H 1.09001 * 109.47194 * 60.00258 * 8 6 4 33 33 H 1.08998 * 109.47533 * 59.99948 * 9 8 6 34 34 H 1.08996 * 109.47853 * 180.02562 * 9 8 6 35 35 H 0.97003 * 119.99624 * 264.99510 * 12 10 9 36 36 H 1.09000 * 109.47023 * 90.00415 * 17 16 15 37 37 H 1.09002 * 109.46745 * 209.99938 * 17 16 15 38 38 H 1.09000 * 109.47241 * 330.00269 * 17 16 15 39 39 H 1.08998 * 109.47225 * 124.97669 * 20 19 18 40 40 H 0.96701 * 114.00080 * 179.97438 * 21 20 19 41 41 H 1.48505 * 109.99959 * 299.99896 * 22 20 19 42 42 H 1.48500 * 110.00059 * 61.31322 * 22 20 19 43 43 H 1.07996 * 127.02694 * 180.26029 * 23 19 18 44 44 H 1.09002 * 109.47045 * 180.02562 * 24 10 9 45 45 H 1.09001 * 109.47375 * 59.99966 * 24 10 9 46 46 H 1.08992 * 109.47554 * 299.99877 * 25 6 4 47 47 H 1.09004 * 109.47108 * 60.00127 * 25 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5449 -0.0005 5 8 4.0807 0.5867 -0.0005 6 6 3.9207 2.9375 0.0000 7 1 3.5851 3.4691 0.8905 8 6 5.4486 2.8574 -0.0001 9 6 6.0334 4.2712 -0.0002 10 6 5.5616 5.0182 -1.2494 11 1 5.8974 4.4861 -2.1395 12 7 6.1221 6.3718 -1.2498 13 6 7.3570 6.5897 -1.7435 14 8 8.0063 5.6627 -2.1882 15 6 7.9206 7.9514 -1.7443 16 6 9.1456 8.3368 -2.2045 17 6 10.1838 7.4296 -2.8133 18 8 9.2687 9.6552 -2.0236 19 6 8.1645 10.1660 -1.4570 20 6 7.9528 11.6166 -1.1077 21 8 7.8441 11.7542 0.3105 22 14 9.3981 12.6201 -1.7200 23 6 7.2772 9.1799 -1.2557 24 6 4.0337 5.0983 -1.2492 25 6 3.4486 3.6851 -1.2486 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8900 31 1 5.7846 2.3249 0.8896 32 1 5.7845 2.3257 -0.8904 33 1 5.6975 4.8035 0.8897 34 1 7.1218 4.2143 -0.0008 35 1 5.6042 7.1112 -0.8947 36 1 10.0323 7.3762 -3.8914 37 1 11.1782 7.8246 -2.6053 38 1 10.0917 6.4322 -2.3835 39 1 7.0370 11.9738 -1.5787 40 1 7.7067 12.6640 0.6080 41 1 10.6530 12.1429 -1.0853 42 1 9.5028 12.5109 -3.1973 43 1 6.2925 9.2697 -0.8214 44 1 3.6976 5.6300 -2.1394 45 1 3.6978 5.6304 -0.3592 46 1 3.7841 3.1536 -2.1390 47 1 2.3600 3.7421 -1.2481 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14589458_13308374.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 02:29:50 Heat of formation + Delta-G solvation = -152.023300 kcal Electronic energy + Delta-G solvation = -29332.111227 eV Core-core repulsion = 25061.742377 eV Total energy + Delta-G solvation = -4270.368851 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 338.165 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -43.90221 -41.88581 -40.87911 -39.06456 -37.88296 -37.69916 -35.46034 -34.28955 -33.31324 -32.74033 -31.86958 -31.02783 -29.42842 -26.28116 -25.31887 -24.35656 -23.80775 -23.49939 -22.35039 -21.73113 -21.21910 -20.46852 -18.76458 -18.73669 -18.46204 -17.72303 -17.65876 -17.41166 -17.21944 -17.07452 -16.08820 -15.96872 -15.81251 -15.44953 -15.25133 -14.98721 -14.85748 -14.57596 -14.37997 -14.26567 -14.18207 -14.05887 -13.97113 -13.78409 -13.52173 -13.27718 -13.16244 -12.94390 -12.80765 -12.61231 -12.54584 -12.40804 -12.21837 -12.21104 -11.67801 -11.56191 -11.43887 -11.39491 -11.11638 -11.03006 -10.45689 -10.16712 -9.67650 -5.09240 0.09808 0.73574 1.08180 1.16714 1.41580 1.60146 1.63296 2.01314 2.06932 2.17601 3.14963 3.39865 3.58461 3.60401 3.62239 3.66010 3.68070 3.89217 3.95725 4.02950 4.03895 4.06356 4.15617 4.24762 4.28114 4.28528 4.31589 4.38844 4.39703 4.43283 4.54910 4.57349 4.69939 4.73622 4.82157 4.88849 4.91167 4.99808 5.01417 5.07040 5.08101 5.13111 5.14211 5.22483 5.26173 5.41392 5.46486 5.78546 6.45205 6.64366 6.85456 7.11798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.053 3.947 3 O -0.356 6.356 4 C 0.464 3.536 5 O -0.544 6.544 6 C -0.074 4.074 7 H 0.138 0.862 8 C -0.097 4.097 9 C -0.120 4.120 10 C 0.144 3.856 11 H 0.068 0.932 12 N -0.703 5.703 13 C 0.590 3.410 14 O -0.574 6.574 15 C -0.262 4.262 16 C 0.072 3.928 17 C -0.084 4.084 18 O -0.194 6.194 19 C -0.039 4.039 20 C -0.033 4.033 21 O -0.559 6.559 22 Si 0.802 3.198 23 C -0.136 4.136 24 C -0.114 4.114 25 C -0.102 4.102 26 H 0.094 0.906 27 H 0.070 0.930 28 H 0.070 0.930 29 H 0.065 0.935 30 H 0.065 0.935 31 H 0.068 0.932 32 H 0.055 0.945 33 H 0.088 0.912 34 H 0.050 0.950 35 H 0.415 0.585 36 H 0.099 0.901 37 H 0.090 0.910 38 H 0.101 0.899 39 H 0.132 0.868 40 H 0.414 0.586 41 H -0.311 1.311 42 H -0.296 1.296 43 H 0.191 0.809 44 H 0.088 0.912 45 H 0.099 0.901 46 H 0.061 0.939 47 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.590 8.419 1.734 11.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.021 4.021 3 O -0.273 6.273 4 C 0.308 3.692 5 O -0.434 6.434 6 C -0.093 4.093 7 H 0.155 0.845 8 C -0.135 4.135 9 C -0.159 4.159 10 C 0.039 3.961 11 H 0.086 0.914 12 N -0.354 5.354 13 C 0.379 3.621 14 O -0.455 6.455 15 C -0.267 4.267 16 C 0.019 3.981 17 C -0.140 4.140 18 O -0.093 6.093 19 C -0.086 4.086 20 C -0.142 4.142 21 O -0.371 6.371 22 Si 0.709 3.291 23 C -0.155 4.155 24 C -0.151 4.151 25 C -0.140 4.140 26 H 0.113 0.887 27 H 0.089 0.911 28 H 0.089 0.911 29 H 0.083 0.917 30 H 0.084 0.916 31 H 0.087 0.913 32 H 0.074 0.926 33 H 0.106 0.894 34 H 0.069 0.931 35 H 0.253 0.747 36 H 0.118 0.882 37 H 0.109 0.891 38 H 0.120 0.880 39 H 0.150 0.850 40 H 0.268 0.732 41 H -0.240 1.240 42 H -0.224 1.224 43 H 0.208 0.792 44 H 0.107 0.893 45 H 0.118 0.882 46 H 0.079 0.921 47 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -5.915 7.002 0.920 9.212 hybrid contribution 0.043 -0.951 0.084 0.955 sum -5.872 6.052 1.004 8.492 Atomic orbital electron populations 1.21817 0.90475 1.04230 1.03874 1.23245 0.97041 0.79490 1.02289 1.86508 1.24061 1.33274 1.83459 1.24337 0.80594 0.93298 0.70950 1.90678 1.61267 1.44624 1.46837 1.21247 0.95625 0.88474 1.03942 0.84456 1.21317 0.92376 0.96934 1.02905 1.21844 1.00224 0.94897 0.98901 1.21076 0.94647 0.81951 0.98401 0.91415 1.45692 1.15939 1.11284 1.62517 1.17274 0.81778 0.86238 0.76796 1.90762 1.60758 1.45042 1.48930 1.21299 0.97117 0.94952 1.13317 1.23298 0.96929 0.80751 0.97123 1.20700 0.95027 0.96536 1.01739 1.83697 1.39716 1.22226 1.63652 1.21872 0.85577 0.97199 1.03938 1.23904 1.12412 0.90245 0.87665 1.86412 1.96348 1.36282 1.18057 0.94422 0.73710 0.84880 0.76069 1.22879 1.01961 0.88637 1.02036 1.21746 0.91203 0.96956 1.05235 1.21455 1.02534 0.94987 0.95064 0.88730 0.91076 0.91076 0.91697 0.91609 0.91346 0.92610 0.89351 0.93071 0.74730 0.88216 0.89079 0.88043 0.85025 0.73234 1.23988 1.22380 0.79199 0.89325 0.88209 0.92056 0.88194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.55 10.29 71.98 0.74 1.29 16 2 C 0.05 0.08 6.19 71.98 0.45 0.52 16 3 O -0.36 -1.15 10.12 -51.38 -0.52 -1.67 16 4 C 0.46 2.38 7.26 71.24 0.52 2.90 16 5 O -0.54 -6.90 15.73 21.97 0.35 -6.56 16 6 C -0.07 0.12 2.63 -11.54 -0.03 0.09 16 7 H 0.14 -0.89 8.14 -2.39 -0.02 -0.91 16 8 C -0.10 -0.19 4.49 30.59 0.14 -0.06 16 9 C -0.12 -0.05 5.49 30.60 0.17 0.11 16 10 C 0.14 -0.08 2.45 44.99 0.11 0.03 16 11 H 0.07 0.34 7.57 -2.39 -0.02 0.32 16 12 N -0.70 0.13 5.07 -445.85 -2.26 -2.13 16 13 C 0.59 4.44 7.78 86.65 0.67 5.11 16 14 O -0.57 -8.20 14.51 -4.05 -0.06 -8.26 16 15 C -0.26 -1.80 6.31 -18.99 -0.12 -1.92 16 16 C 0.07 0.62 7.37 25.26 0.19 0.80 16 17 C -0.08 -0.42 9.89 71.24 0.70 0.28 16 18 O -0.19 -1.79 8.90 4.55 0.04 -1.75 16 19 C -0.04 -0.17 6.22 24.76 0.15 -0.02 16 20 C -0.03 0.12 2.96 71.24 0.21 0.33 16 21 O -0.56 2.39 12.86 -148.98 -1.92 0.48 16 22 Si 0.80 -1.90 32.09 68.60 2.20 0.30 16 23 C -0.14 -0.29 10.48 23.65 0.25 -0.04 16 24 C -0.11 0.80 5.39 30.58 0.16 0.96 16 25 C -0.10 0.48 5.13 30.58 0.16 0.63 16 26 H 0.09 -0.59 8.14 -2.39 -0.02 -0.61 16 27 H 0.07 -0.29 8.14 -2.39 -0.02 -0.31 16 28 H 0.07 -0.29 8.14 -2.39 -0.02 -0.31 16 29 H 0.06 0.16 8.13 -2.39 -0.02 0.14 16 30 H 0.07 0.15 8.13 -2.39 -0.02 0.13 16 31 H 0.07 0.26 8.10 -2.39 -0.02 0.24 16 32 H 0.06 0.34 8.10 -2.39 -0.02 0.32 16 33 H 0.09 -0.29 8.14 -2.39 -0.02 -0.31 16 34 H 0.05 0.31 8.14 -2.39 -0.02 0.29 16 35 H 0.42 -2.61 7.77 -92.71 -0.72 -3.33 16 36 H 0.10 0.29 8.14 -2.39 -0.02 0.27 16 37 H 0.09 0.19 8.14 -2.39 -0.02 0.17 16 38 H 0.10 0.76 6.49 -2.39 -0.02 0.74 16 39 H 0.13 -1.39 7.96 -2.39 -0.02 -1.41 16 40 H 0.41 -6.49 8.74 -74.06 -0.65 -7.14 16 41 H -0.31 -2.46 7.11 99.48 0.71 -1.75 16 42 H -0.30 -1.38 7.11 99.48 0.71 -0.67 16 43 H 0.19 -1.00 7.74 -2.91 -0.02 -1.02 16 44 H 0.09 -0.71 8.14 -2.39 -0.02 -0.73 16 45 H 0.10 -1.11 8.14 -2.39 -0.02 -1.13 16 46 H 0.06 -0.11 8.14 -2.39 -0.02 -0.13 16 47 H 0.10 -0.68 8.11 -2.38 -0.02 -0.70 16 Total: 0.00 -28.36 390.26 1.96 -26.40 By element: Atomic # 1 Polarization: -17.49 SS G_CDS: -0.34 Total: -17.83 kcal Atomic # 6 Polarization: 6.55 SS G_CDS: 4.47 Total: 11.02 kcal Atomic # 7 Polarization: 0.13 SS G_CDS: -2.26 Total: -2.13 kcal Atomic # 8 Polarization: -15.65 SS G_CDS: -2.11 Total: -17.76 kcal Atomic # 14 Polarization: -1.90 SS G_CDS: 2.20 Total: 0.30 kcal Total: -28.36 1.96 -26.40 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14589458_13308374.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -125.624 kcal (2) G-P(sol) polarization free energy of solvation -28.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.959 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -26.400 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds