Wall clock time and date at job start Sun Mar 7 2021 02:29:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.45197 * 109.47561 * 2 1 4 4 C 1.34224 * 117.00569 * 179.97438 * 3 2 1 5 5 O 1.20831 * 119.99608 * 0.02562 * 4 3 2 6 6 C 1.50696 * 120.00364 * 179.97438 * 4 3 2 7 7 H 1.08999 * 109.47495 * 300.00277 * 6 4 3 8 8 C 1.53004 * 109.47127 * 60.00265 * 6 4 3 9 9 C 1.52996 * 109.47196 * 180.02562 * 8 6 4 10 10 C 1.53007 * 109.47029 * 300.00079 * 9 8 6 11 11 H 1.09004 * 109.46942 * 299.99518 * 10 9 8 12 12 N 1.46505 * 109.46769 * 180.02562 * 10 9 8 13 13 C 1.34780 * 119.99707 * 85.00288 * 12 10 9 14 14 O 1.21592 * 120.00375 * 359.97438 * 13 12 10 15 15 C 1.47565 * 119.99485 * 179.97438 * 13 12 10 16 16 C 1.39826 * 119.99887 * 179.97438 * 15 13 12 17 17 C 1.36565 * 119.99906 * 179.97438 * 16 15 13 18 18 C 1.39819 * 119.99749 * 359.97438 * 17 16 15 19 19 C 1.47565 * 119.99380 * 179.97438 * 18 17 16 20 20 C 1.34986 * 125.27260 * 179.97438 * 19 18 17 21 21 C 1.37802 * 114.69744 * 180.02562 * 20 19 18 22 22 C 1.33743 * 115.08149 * 359.97438 * 21 20 19 23 23 C 1.50699 * 125.11318 * 179.97438 * 22 21 20 24 24 O 1.42898 * 109.47115 * 299.99776 * 23 22 21 25 25 Si 1.86303 * 109.46531 * 179.97438 * 23 22 21 26 26 S 1.75859 * 109.76237 * 359.73883 * 22 21 20 27 27 C 1.39820 * 120.00696 * 0.02562 * 18 17 16 28 28 C 1.36565 * 119.99958 * 0.02562 * 27 18 17 29 29 C 1.52992 * 109.47453 * 60.00050 * 10 9 8 30 30 C 1.52998 * 109.47226 * 180.02562 * 6 4 3 31 31 H 1.08998 * 109.47395 * 300.00685 * 1 2 3 32 32 H 1.09006 * 109.46566 * 60.00151 * 1 2 3 33 33 H 1.08995 * 109.47546 * 180.02562 * 1 2 3 34 34 H 1.08998 * 109.47395 * 239.99314 * 2 1 3 35 35 H 1.09006 * 109.46566 * 119.99849 * 2 1 3 36 36 H 1.08999 * 109.47132 * 299.99967 * 8 6 4 37 37 H 1.08999 * 109.46923 * 59.99662 * 8 6 4 38 38 H 1.08999 * 109.46981 * 180.02562 * 9 8 6 39 39 H 1.08999 * 109.47500 * 59.99966 * 9 8 6 40 40 H 0.96998 * 119.99667 * 264.99734 * 12 10 9 41 41 H 1.08004 * 120.00449 * 0.25318 * 16 15 13 42 42 H 1.08000 * 119.99639 * 180.02562 * 17 16 15 43 43 H 1.07999 * 122.65169 * 359.97438 * 20 19 18 44 44 H 1.07999 * 122.45461 * 179.97438 * 21 20 19 45 45 H 1.08997 * 109.47459 * 60.00476 * 23 22 21 46 46 H 0.96704 * 114.00340 * 300.00405 * 24 23 22 47 47 H 1.48503 * 109.99743 * 179.97438 * 25 23 22 48 48 H 1.48498 * 110.00190 * 301.31723 * 25 23 22 49 49 H 1.07996 * 119.99848 * 180.02562 * 27 18 17 50 50 H 1.08000 * 120.00068 * 179.97438 * 28 27 18 51 51 H 1.09009 * 109.47156 * 59.99475 * 29 10 9 52 52 H 1.08999 * 109.47389 * 180.02562 * 29 10 9 53 53 H 1.08995 * 109.47586 * 59.99803 * 30 6 4 54 54 H 1.09009 * 109.47281 * 299.99716 * 30 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3689 0.0000 4 6 3.3447 1.5448 0.0005 5 8 4.0808 0.5865 0.0005 6 6 3.9208 2.9373 0.0000 7 1 3.5853 3.4690 -0.8904 8 6 3.4487 3.6850 1.2486 9 6 4.0330 5.0990 1.2478 10 6 5.5610 5.0194 1.2481 11 1 5.8969 4.4880 2.1386 12 7 6.1205 6.3734 1.2479 13 6 6.2836 7.0353 2.4106 14 8 5.9660 6.5089 3.4597 15 6 6.8476 8.3989 2.4104 16 6 7.0163 9.0859 3.6165 17 6 7.5388 10.3476 3.6164 18 6 7.9055 10.9522 2.4102 19 6 8.4695 12.3158 2.4101 20 6 8.8585 12.9984 1.3124 21 6 9.3559 14.2586 1.5642 22 6 9.3769 14.6126 2.8538 23 6 9.8733 15.9338 3.3820 24 8 11.2467 16.1036 3.0257 25 14 9.7040 15.9638 5.2371 26 16 8.7319 13.3067 3.8394 27 6 7.7368 10.2654 1.2041 28 6 7.2134 9.0040 1.2040 29 6 6.0331 4.2718 -0.0004 30 6 5.4487 2.8572 0.0001 31 1 -0.3634 0.5139 0.8899 32 1 -0.3633 0.5139 -0.8901 33 1 -0.3634 -1.0276 0.0005 34 1 1.8934 -0.5139 -0.8899 35 1 1.8932 -0.5139 0.8901 36 1 2.3602 3.7421 1.2481 37 1 3.7842 3.1533 2.1390 38 1 3.6971 5.6315 2.1375 39 1 3.6971 5.6305 0.3574 40 1 6.3736 6.7934 0.4110 41 1 6.7377 8.6170 4.5487 42 1 7.6695 10.8780 4.5480 43 1 8.7864 12.5889 0.3156 44 1 9.7032 14.9124 0.7779 45 1 9.2833 16.7424 2.9507 46 1 11.8317 15.4181 3.3764 47 1 10.1907 17.2614 5.7706 48 1 8.2845 15.7566 5.6210 49 1 8.0205 10.7323 0.2725 50 1 7.0827 8.4736 0.2724 51 1 5.6971 4.8032 -0.8909 52 1 7.1216 4.2147 0.0001 53 1 5.7847 2.3247 -0.8895 54 1 5.7846 2.3254 0.8904 There are 74 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 74 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14589458_13308390.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 02:29:54 Heat of formation + Delta-G solvation = -101.926278 kcal Electronic energy + Delta-G solvation = -35355.619483 eV Core-core repulsion = 30543.051500 eV Total energy + Delta-G solvation = -4812.567983 eV No. of doubly occupied orbitals = 74 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 416.154 amu Computer time = 1.38 seconds Orbital eigenvalues (eV) -41.90209 -41.39647 -40.12810 -39.23832 -38.76627 -37.68163 -37.34415 -35.47660 -33.57990 -32.75859 -32.29398 -31.83435 -31.09159 -30.13562 -27.27467 -25.64916 -24.61160 -23.97054 -23.86133 -23.61542 -23.21230 -22.00775 -21.55255 -20.88709 -20.23194 -19.21606 -18.75546 -18.54257 -17.76742 -17.65835 -17.57082 -17.24159 -16.62794 -16.27905 -16.21319 -16.15488 -16.01083 -15.61965 -15.43222 -15.23956 -15.00161 -14.91362 -14.58550 -14.50006 -14.44088 -14.31333 -14.07693 -13.87607 -13.81680 -13.59866 -13.50438 -13.31091 -13.20994 -13.07799 -12.94939 -12.76741 -12.58108 -12.52455 -12.38955 -12.27767 -12.19019 -12.04932 -11.62646 -11.56025 -11.53863 -11.46121 -11.36520 -11.02478 -10.79722 -10.52547 -10.16597 -10.11960 -9.54360 -9.01367 -5.15797 -0.86988 0.27272 0.36375 0.39510 0.77432 1.09204 1.22562 1.53519 1.60324 1.62614 1.85091 1.98741 2.06216 2.85543 3.40410 3.44639 3.47238 3.55202 3.62965 3.70009 3.75778 3.77984 3.86667 3.92284 3.96700 4.02803 4.08264 4.16665 4.22726 4.29476 4.31351 4.31808 4.34931 4.37813 4.43114 4.47967 4.57814 4.62323 4.64358 4.75869 4.82519 4.88002 4.92942 4.94538 5.03101 5.04624 5.08164 5.09835 5.12685 5.14793 5.23479 5.26952 5.27701 5.31595 5.34842 5.42722 5.48601 5.49942 5.75816 6.49419 6.65338 6.66898 7.16499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.054 3.946 3 O -0.360 6.360 4 C 0.463 3.537 5 O -0.541 6.541 6 C -0.074 4.074 7 H 0.139 0.861 8 C -0.103 4.103 9 C -0.120 4.120 10 C 0.141 3.859 11 H 0.064 0.936 12 N -0.705 5.705 13 C 0.557 3.443 14 O -0.581 6.581 15 C -0.150 4.150 16 C -0.065 4.065 17 C -0.129 4.129 18 C 0.005 3.995 19 C -0.159 4.159 20 C -0.116 4.116 21 C -0.110 4.110 22 C -0.221 4.221 23 C -0.024 4.024 24 O -0.546 6.546 25 Si 0.715 3.285 26 S 0.120 5.880 27 C -0.108 4.108 28 C -0.066 4.066 29 C -0.113 4.113 30 C -0.099 4.099 31 H 0.067 0.933 32 H 0.070 0.930 33 H 0.095 0.905 34 H 0.069 0.931 35 H 0.064 0.936 36 H 0.086 0.914 37 H 0.055 0.945 38 H 0.054 0.946 39 H 0.093 0.907 40 H 0.417 0.583 41 H 0.127 0.873 42 H 0.132 0.868 43 H 0.167 0.833 44 H 0.154 0.846 45 H 0.123 0.877 46 H 0.397 0.603 47 H -0.269 1.269 48 H -0.268 1.268 49 H 0.161 0.839 50 H 0.165 0.835 51 H 0.102 0.898 52 H 0.085 0.915 53 H 0.080 0.920 54 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.171 1.757 -6.018 6.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.020 4.020 3 O -0.277 6.277 4 C 0.307 3.693 5 O -0.431 6.431 6 C -0.093 4.093 7 H 0.157 0.843 8 C -0.141 4.141 9 C -0.159 4.159 10 C 0.037 3.963 11 H 0.082 0.918 12 N -0.357 5.357 13 C 0.346 3.654 14 O -0.462 6.462 15 C -0.154 4.154 16 C -0.084 4.084 17 C -0.148 4.148 18 C 0.003 3.997 19 C -0.276 4.276 20 C -0.146 4.146 21 C -0.140 4.140 22 C -0.339 4.339 23 C -0.137 4.137 24 O -0.355 6.355 25 Si 0.619 3.381 26 S 0.387 5.613 27 C -0.128 4.128 28 C -0.085 4.085 29 C -0.151 4.151 30 C -0.137 4.137 31 H 0.086 0.914 32 H 0.089 0.911 33 H 0.114 0.886 34 H 0.087 0.913 35 H 0.082 0.918 36 H 0.105 0.895 37 H 0.074 0.926 38 H 0.073 0.927 39 H 0.111 0.889 40 H 0.255 0.745 41 H 0.145 0.855 42 H 0.150 0.850 43 H 0.185 0.815 44 H 0.171 0.829 45 H 0.140 0.860 46 H 0.247 0.753 47 H -0.194 1.194 48 H -0.194 1.194 49 H 0.179 0.821 50 H 0.183 0.817 51 H 0.120 0.880 52 H 0.103 0.897 53 H 0.099 0.901 54 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -0.697 1.803 -3.313 3.835 hybrid contribution 0.049 0.068 -1.689 1.691 sum -0.648 1.871 -5.002 5.379 Atomic orbital electron populations 1.21821 0.90691 1.04224 1.03759 1.23232 0.96921 0.79475 1.02363 1.86514 1.24364 1.33336 1.83468 1.24369 0.80523 0.93400 0.70970 1.90672 1.61136 1.44511 1.46782 1.21263 0.96625 0.88174 1.03195 0.84348 1.21425 1.01954 0.95219 0.95487 1.21847 0.94442 0.96232 1.03345 1.21055 0.93374 0.82069 0.99803 0.91769 1.45821 1.64171 1.16759 1.08981 1.18479 0.77342 0.85806 0.83782 1.90789 1.52588 1.69736 1.33058 1.20039 1.05515 0.94420 0.95396 1.20939 0.95459 0.93896 0.98116 1.21020 1.00441 0.95406 0.97927 1.18465 0.96349 0.90508 0.94348 1.23172 1.09358 0.97971 0.97050 1.20639 0.99920 0.94128 0.99960 1.20187 1.00608 0.97004 0.96175 1.25152 1.09998 1.01076 0.97662 1.24383 0.85450 0.93316 1.10592 1.86491 1.15726 1.54321 1.78919 0.94187 0.82694 0.86486 0.74746 1.84212 1.60833 1.06776 1.09499 1.21204 0.99200 0.94557 0.97845 1.21280 0.94995 0.94882 0.97326 1.21760 1.01841 0.94256 0.97261 1.21375 0.91479 0.97345 1.03535 0.91370 0.91060 0.88649 0.91308 0.91759 0.89511 0.92605 0.92703 0.88873 0.74457 0.85491 0.84976 0.81530 0.82869 0.86027 0.75323 1.19422 1.19413 0.82149 0.81719 0.88004 0.89689 0.90090 0.92459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.47 10.29 71.98 0.74 1.21 16 2 C 0.05 0.08 6.19 71.98 0.45 0.53 16 3 O -0.36 -1.32 10.12 -51.36 -0.52 -1.84 16 4 C 0.46 2.09 7.26 71.23 0.52 2.60 16 5 O -0.54 -6.01 15.73 21.95 0.35 -5.66 16 6 C -0.07 0.19 2.63 -11.54 -0.03 0.16 16 7 H 0.14 -1.07 8.14 -2.39 -0.02 -1.08 16 8 C -0.10 0.19 5.14 30.59 0.16 0.35 16 9 C -0.12 0.32 5.49 30.60 0.17 0.49 16 10 C 0.14 -0.32 2.45 44.99 0.11 -0.21 16 11 H 0.06 0.26 7.57 -2.39 -0.02 0.25 16 12 N -0.71 2.40 5.03 -445.65 -2.24 0.16 16 13 C 0.56 2.36 7.73 86.70 0.67 3.03 16 14 O -0.58 -7.84 15.99 -4.01 -0.06 -7.90 16 15 C -0.15 -0.19 5.88 -20.05 -0.12 -0.31 16 16 C -0.07 -0.23 9.53 22.26 0.21 -0.02 16 17 C -0.13 -0.19 9.54 22.26 0.21 0.02 16 18 C 0.01 0.00 5.88 -20.05 -0.12 -0.12 16 19 C -0.16 0.09 6.37 23.98 0.15 0.24 16 20 C -0.12 0.33 9.64 21.42 0.21 0.54 16 21 C -0.11 0.20 10.00 21.15 0.21 0.41 16 22 C -0.22 0.23 5.73 24.66 0.14 0.38 16 23 C -0.02 0.04 2.96 71.24 0.21 0.25 16 24 O -0.55 0.76 12.86 -148.98 -1.92 -1.15 16 25 Si 0.72 -1.06 30.96 68.60 2.12 1.06 16 26 S 0.12 -0.05 19.46 -56.49 -1.10 -1.15 16 27 C -0.11 0.52 9.48 22.26 0.21 0.74 16 28 C -0.07 0.36 9.48 22.26 0.21 0.57 16 29 C -0.11 0.81 5.39 30.61 0.17 0.98 16 30 C -0.10 0.26 4.50 30.61 0.14 0.40 16 31 H 0.07 -0.20 8.14 -2.39 -0.02 -0.22 16 32 H 0.07 -0.25 8.14 -2.38 -0.02 -0.27 16 33 H 0.09 -0.57 8.14 -2.39 -0.02 -0.59 16 34 H 0.07 0.12 8.13 -2.39 -0.02 0.10 16 35 H 0.06 0.17 8.13 -2.38 -0.02 0.15 16 36 H 0.09 -0.22 8.11 -2.39 -0.02 -0.23 16 37 H 0.06 0.09 8.14 -2.39 -0.02 0.07 16 38 H 0.05 0.14 8.14 -2.39 -0.02 0.12 16 39 H 0.09 -0.64 8.14 -2.39 -0.02 -0.66 16 40 H 0.42 -4.44 6.61 -92.71 -0.61 -5.05 16 41 H 0.13 0.69 7.64 -2.91 -0.02 0.67 16 42 H 0.13 -0.01 7.26 -2.91 -0.02 -0.03 16 43 H 0.17 -1.34 6.88 -2.91 -0.02 -1.36 16 44 H 0.15 -0.55 8.06 -2.91 -0.02 -0.57 16 45 H 0.12 -0.17 7.96 -2.39 -0.02 -0.19 16 46 H 0.40 -3.53 8.70 -74.05 -0.64 -4.17 16 47 H -0.27 -1.19 7.11 99.48 0.71 -0.48 16 48 H -0.27 -0.93 7.11 99.48 0.71 -0.22 16 49 H 0.16 -1.67 6.74 -2.91 -0.02 -1.69 16 50 H 0.17 -2.17 6.38 -2.91 -0.02 -2.19 16 51 H 0.10 -1.23 8.14 -2.38 -0.02 -1.25 16 52 H 0.08 -0.64 8.14 -2.39 -0.02 -0.66 16 53 H 0.08 -0.18 8.10 -2.39 -0.02 -0.20 16 54 H 0.06 0.10 8.10 -2.38 -0.02 0.08 16 Total: 0.00 -24.94 453.58 0.97 -23.97 By element: Atomic # 1 Polarization: -19.44 SS G_CDS: -0.28 Total: -19.72 kcal Atomic # 6 Polarization: 7.62 SS G_CDS: 4.62 Total: 12.24 kcal Atomic # 7 Polarization: 2.40 SS G_CDS: -2.24 Total: 0.16 kcal Atomic # 8 Polarization: -14.41 SS G_CDS: -2.15 Total: -16.56 kcal Atomic # 14 Polarization: -1.06 SS G_CDS: 2.12 Total: 1.06 kcal Atomic # 16 Polarization: -0.05 SS G_CDS: -1.10 Total: -1.15 kcal Total: -24.94 0.97 -23.97 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14589458_13308390.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.953 kcal (2) G-P(sol) polarization free energy of solvation -24.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.974 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.39 seconds