Wall clock time and date at job start Sun Mar 7 2021 02:30:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.45199 * 109.47043 * 2 1 4 4 C 1.34233 * 116.99626 * 180.02562 * 3 2 1 5 5 O 1.20825 * 119.99989 * 359.97438 * 4 3 2 6 6 C 1.50701 * 119.99638 * 180.02562 * 4 3 2 7 7 H 1.09000 * 109.47353 * 59.99515 * 6 4 3 8 8 C 1.53002 * 109.47178 * 180.02562 * 6 4 3 9 9 C 1.52995 * 109.47440 * 179.97438 * 8 6 4 10 10 C 1.53002 * 109.47000 * 299.99879 * 9 8 6 11 11 H 1.09000 * 109.46880 * 299.99689 * 10 9 8 12 12 N 1.46497 * 109.47223 * 179.97438 * 10 9 8 13 13 C 1.34779 * 120.00430 * 154.99662 * 12 10 9 14 14 O 1.21593 * 119.99372 * 0.02562 * 13 12 10 15 15 C 1.47534 * 120.00006 * 180.02562 * 13 12 10 16 16 C 1.40142 * 120.18777 * 180.02562 * 15 13 12 17 17 O 1.35655 * 120.15066 * 359.97438 * 16 15 13 18 18 C 1.38705 * 119.69771 * 180.02562 * 16 15 13 19 19 C 1.38054 * 120.08635 * 359.97438 * 18 16 15 20 20 C 1.50693 * 119.80708 * 179.97438 * 19 18 16 21 21 O 1.42907 * 109.47661 * 300.00721 * 20 19 18 22 22 Si 1.86298 * 109.47618 * 180.02562 * 20 19 18 23 23 C 1.38548 * 120.38929 * 0.26014 * 19 18 16 24 24 C 1.37792 * 120.29832 * 359.48077 * 23 19 18 25 25 C 1.52998 * 109.47430 * 59.99799 * 10 9 8 26 26 C 1.52999 * 109.46963 * 300.00337 * 25 10 9 27 27 H 1.09002 * 109.47360 * 60.00102 * 1 2 3 28 28 H 1.08999 * 109.47284 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.47039 * 300.00100 * 1 2 3 30 30 H 1.08997 * 109.46704 * 239.99762 * 2 1 3 31 31 H 1.09004 * 109.46862 * 119.99737 * 2 1 3 32 32 H 1.08994 * 109.47098 * 59.99330 * 8 6 4 33 33 H 1.09007 * 109.46501 * 299.99966 * 8 6 4 34 34 H 1.08998 * 109.46990 * 179.97438 * 9 8 6 35 35 H 1.09000 * 109.47050 * 59.99463 * 9 8 6 36 36 H 0.97004 * 119.99899 * 335.00248 * 12 10 9 37 37 H 0.96696 * 114.00004 * 270.02118 * 17 16 15 38 38 H 1.08002 * 119.95676 * 179.97438 * 18 16 15 39 39 H 1.09000 * 109.46936 * 60.00344 * 20 19 18 40 40 H 0.96697 * 114.00527 * 179.97438 * 21 20 19 41 41 H 1.48506 * 109.99834 * 298.68714 * 22 20 19 42 42 H 1.48502 * 110.00011 * 59.99978 * 22 20 19 43 43 H 1.07994 * 119.84982 * 179.74159 * 23 19 18 44 44 H 1.07998 * 120.04661 * 180.27720 * 24 23 19 45 45 H 1.09001 * 109.46928 * 59.99585 * 25 10 9 46 46 H 1.08996 * 109.47452 * 179.97438 * 25 10 9 47 47 H 1.08994 * 109.47257 * 299.99640 * 26 25 10 48 48 H 1.09010 * 109.47175 * 180.02562 * 26 25 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3448 1.5448 -0.0005 5 8 4.0807 0.5865 -0.0005 6 6 3.9207 2.9374 0.0000 7 1 3.5852 3.4690 0.8904 8 6 5.4487 2.8573 -0.0014 9 6 6.0335 4.2711 -0.0015 10 6 5.5608 5.0184 -1.2501 11 1 5.8960 4.4865 -2.1405 12 7 6.1203 6.3723 -1.2499 13 6 6.2829 7.0346 -2.4125 14 8 5.9648 6.5083 -3.4615 15 6 6.8469 8.3978 -2.4123 16 6 7.0172 9.0902 -3.6188 17 8 6.6647 8.5097 -4.7931 18 6 7.5488 10.3713 -3.6068 19 6 7.9076 10.9605 -2.4110 20 6 8.4852 12.3523 -2.4053 21 8 9.6875 12.3724 -3.1775 22 14 8.8644 12.8604 -0.6535 23 6 7.7453 10.2774 -1.2165 24 6 7.2138 9.0062 -1.2094 25 6 4.0329 5.0985 -1.2488 26 6 3.4482 3.6847 -1.2486 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.8932 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 5.7838 2.3258 -0.8920 33 1 5.7853 2.3245 0.8880 34 1 7.1220 4.2140 -0.0021 35 1 5.6983 4.8030 0.8889 36 1 6.3738 6.7923 -0.4130 37 1 7.3756 8.0052 -5.2114 38 1 7.6823 10.9085 -4.5341 39 1 7.7644 13.0465 -2.8373 40 1 10.1146 13.2391 -3.2181 41 1 7.6173 12.8742 0.1526 42 1 9.8464 11.9216 -0.0537 43 1 8.0328 10.7451 -0.2865 44 1 7.0849 8.4792 -0.2756 45 1 3.6978 5.6303 -0.3583 46 1 3.6962 5.6313 -2.1381 47 1 3.7833 3.1528 -2.1390 48 1 2.3596 3.7417 -1.2482 There are 65 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 65 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14589458_13422076.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 02:30:00 Heat of formation + Delta-G solvation = -176.738750 kcal Electronic energy + Delta-G solvation = -30687.297482 eV Core-core repulsion = 26287.630748 eV Total energy + Delta-G solvation = -4399.666734 eV No. of doubly occupied orbitals = 65 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 350.165 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -41.98322 -41.66727 -40.35478 -39.01743 -38.37106 -37.69053 -37.22597 -35.42590 -33.25714 -32.67631 -31.88428 -31.24962 -30.78188 -27.56673 -25.55004 -24.05645 -23.90667 -23.83817 -23.15860 -22.04281 -21.56661 -20.95820 -19.40808 -18.84169 -18.69900 -18.43497 -17.84003 -17.68348 -17.60331 -16.81588 -16.65047 -16.39342 -16.13522 -15.59593 -15.56452 -15.32679 -15.24848 -14.96805 -14.71773 -14.53676 -14.16585 -14.15606 -13.99447 -13.84214 -13.53914 -13.42479 -13.29755 -12.98016 -12.97428 -12.80973 -12.55435 -12.52194 -12.43587 -12.24176 -12.10740 -11.85461 -11.66228 -11.57061 -11.49536 -11.37903 -10.93155 -10.48160 -10.22478 -10.06042 -9.87815 -4.89591 -0.52032 0.00796 1.06064 1.28540 1.59443 1.60026 1.70857 1.96787 1.97338 2.45346 3.04026 3.25182 3.40796 3.46923 3.52135 3.59304 3.65007 3.74162 3.87613 3.94212 4.00404 4.01773 4.03618 4.11442 4.16645 4.24272 4.26009 4.28669 4.29039 4.38137 4.55615 4.56276 4.65087 4.71387 4.79599 4.84849 4.85902 4.87428 4.99642 5.01068 5.05133 5.06084 5.11715 5.11846 5.20486 5.23801 5.39101 5.43592 5.46036 6.41305 6.62330 6.62821 6.87285 7.10648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.053 3.947 3 O -0.360 6.360 4 C 0.464 3.536 5 O -0.540 6.540 6 C -0.074 4.074 7 H 0.138 0.862 8 C -0.098 4.098 9 C -0.114 4.114 10 C 0.143 3.857 11 H 0.066 0.934 12 N -0.709 5.709 13 C 0.558 3.442 14 O -0.559 6.559 15 C -0.181 4.181 16 C 0.158 3.842 17 O -0.494 6.494 18 C -0.136 4.136 19 C -0.041 4.041 20 C -0.091 4.091 21 O -0.564 6.564 22 Si 0.779 3.221 23 C -0.154 4.154 24 C -0.052 4.052 25 C -0.120 4.120 26 C -0.102 4.102 27 H 0.067 0.933 28 H 0.096 0.904 29 H 0.070 0.930 30 H 0.064 0.936 31 H 0.069 0.931 32 H 0.058 0.942 33 H 0.081 0.919 34 H 0.084 0.916 35 H 0.100 0.900 36 H 0.414 0.586 37 H 0.408 0.592 38 H 0.144 0.856 39 H 0.097 0.903 40 H 0.406 0.594 41 H -0.280 1.280 42 H -0.289 1.289 43 H 0.137 0.863 44 H 0.168 0.832 45 H 0.091 0.909 46 H 0.053 0.947 47 H 0.056 0.944 48 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.951 6.758 5.891 9.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.020 4.020 3 O -0.277 6.277 4 C 0.308 3.692 5 O -0.430 6.430 6 C -0.093 4.093 7 H 0.156 0.844 8 C -0.137 4.137 9 C -0.152 4.152 10 C 0.039 3.961 11 H 0.084 0.916 12 N -0.361 5.361 13 C 0.346 3.654 14 O -0.438 6.438 15 C -0.185 4.185 16 C 0.111 3.889 17 O -0.307 6.307 18 C -0.155 4.155 19 C -0.042 4.042 20 C -0.200 4.200 21 O -0.374 6.374 22 Si 0.683 3.317 23 C -0.172 4.172 24 C -0.070 4.070 25 C -0.159 4.159 26 C -0.140 4.140 27 H 0.086 0.914 28 H 0.114 0.886 29 H 0.089 0.911 30 H 0.083 0.917 31 H 0.087 0.913 32 H 0.077 0.923 33 H 0.100 0.900 34 H 0.103 0.897 35 H 0.118 0.882 36 H 0.252 0.748 37 H 0.269 0.731 38 H 0.162 0.838 39 H 0.115 0.885 40 H 0.257 0.743 41 H -0.207 1.207 42 H -0.216 1.216 43 H 0.155 0.845 44 H 0.185 0.815 45 H 0.109 0.891 46 H 0.071 0.929 47 H 0.075 0.925 48 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 0.204 5.451 5.997 8.107 hybrid contribution 0.230 -0.936 -0.610 1.141 sum 0.434 4.515 5.386 7.042 Atomic orbital electron populations 1.21824 0.90666 1.04261 1.03747 1.23244 0.96947 0.79435 1.02396 1.86518 1.24325 1.33389 1.83464 1.24326 0.80545 0.93328 0.70990 1.90669 1.61127 1.44469 1.46760 1.21259 0.96620 0.88266 1.03143 0.84414 1.21356 0.91483 0.97198 1.03615 1.21750 1.01822 0.94385 0.97198 1.21050 0.93313 0.81862 0.99866 0.91572 1.45842 1.64585 1.16906 1.08815 1.18198 0.77850 0.85244 0.84095 1.90813 1.51339 1.69127 1.32559 1.20462 1.07726 0.95444 0.94858 1.18759 0.93023 0.91558 0.85521 1.84703 1.42152 1.70212 1.33617 1.21383 0.99553 0.94943 0.99596 1.19857 0.95700 0.95741 0.92854 1.25035 0.90065 0.94769 1.10142 1.86432 1.37998 1.39012 1.73948 0.94007 0.79087 0.87257 0.71363 1.21039 1.02791 0.95830 0.97496 1.21406 0.94005 0.94252 0.97363 1.21842 0.94507 0.96339 1.03195 1.21418 1.01953 0.95082 0.95555 0.91380 0.88580 0.91080 0.91717 0.91274 0.92335 0.90030 0.89720 0.88185 0.74790 0.73139 0.83846 0.88515 0.74254 1.20727 1.21633 0.84544 0.81491 0.89076 0.92865 0.92500 0.89490 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.39 10.29 71.98 0.74 1.13 16 2 C 0.05 0.11 6.19 71.98 0.45 0.56 16 3 O -0.36 -1.59 10.12 -51.45 -0.52 -2.11 16 4 C 0.46 2.45 7.25 71.24 0.52 2.96 16 5 O -0.54 -6.34 15.73 21.97 0.35 -5.99 16 6 C -0.07 0.11 2.63 -11.54 -0.03 0.08 16 7 H 0.14 -0.90 8.14 -2.39 -0.02 -0.92 16 8 C -0.10 0.16 4.49 30.59 0.14 0.30 16 9 C -0.11 0.65 5.39 30.59 0.16 0.81 16 10 C 0.14 -0.09 2.45 44.99 0.11 0.02 16 11 H 0.07 0.35 7.58 -2.39 -0.02 0.33 16 12 N -0.71 0.72 5.03 -445.70 -2.24 -1.52 16 13 C 0.56 3.79 7.73 86.69 0.67 4.46 16 14 O -0.56 -8.37 14.82 16.91 0.25 -8.11 16 15 C -0.18 -0.90 5.89 -20.01 -0.12 -1.01 16 16 C 0.16 1.15 6.72 22.84 0.15 1.30 16 17 O -0.49 -4.50 11.58 -68.78 -0.80 -5.30 16 18 C -0.14 -0.66 9.53 22.34 0.21 -0.44 16 19 C -0.04 -0.10 5.43 -19.84 -0.11 -0.21 16 20 C -0.09 0.28 2.80 71.23 0.20 0.48 16 21 O -0.56 1.39 12.74 -148.98 -1.90 -0.51 16 22 Si 0.78 -4.41 29.77 68.60 2.04 -2.36 16 23 C -0.15 -0.13 8.65 22.24 0.19 0.06 16 24 C -0.05 0.03 9.54 22.52 0.21 0.25 16 25 C -0.12 0.11 5.49 30.59 0.17 0.28 16 26 C -0.10 0.07 5.13 30.60 0.16 0.22 16 27 H 0.07 -0.16 8.14 -2.39 -0.02 -0.18 16 28 H 0.10 -0.53 8.14 -2.39 -0.02 -0.55 16 29 H 0.07 -0.21 8.14 -2.39 -0.02 -0.23 16 30 H 0.06 0.20 8.13 -2.39 -0.02 0.18 16 31 H 0.07 0.15 8.13 -2.39 -0.02 0.13 16 32 H 0.06 0.15 8.10 -2.39 -0.02 0.13 16 33 H 0.08 -0.11 8.10 -2.38 -0.02 -0.13 16 34 H 0.08 -0.52 8.14 -2.39 -0.02 -0.54 16 35 H 0.10 -1.04 8.14 -2.39 -0.02 -1.05 16 36 H 0.41 -3.22 6.63 -92.71 -0.61 -3.83 16 37 H 0.41 0.92 9.06 -74.06 -0.67 0.25 16 38 H 0.14 0.50 8.06 -2.91 -0.02 0.48 16 39 H 0.10 -0.63 7.96 -2.39 -0.02 -0.64 16 40 H 0.41 -5.22 8.74 -74.06 -0.65 -5.87 16 41 H -0.28 0.32 7.11 99.48 0.71 1.02 16 42 H -0.29 -0.30 7.11 99.48 0.71 0.41 16 43 H 0.14 -0.23 4.85 -2.91 -0.01 -0.24 16 44 H 0.17 -1.44 6.40 -2.91 -0.02 -1.46 16 45 H 0.09 -0.45 8.14 -2.39 -0.02 -0.47 16 46 H 0.05 0.25 8.14 -2.39 -0.02 0.23 16 47 H 0.06 0.15 8.14 -2.39 -0.02 0.13 16 48 H 0.09 -0.11 8.11 -2.38 -0.02 -0.13 16 Total: 0.00 -27.74 392.74 0.13 -27.62 By element: Atomic # 1 Polarization: -12.07 SS G_CDS: -0.88 Total: -12.95 kcal Atomic # 6 Polarization: 7.41 SS G_CDS: 3.83 Total: 11.24 kcal Atomic # 7 Polarization: 0.72 SS G_CDS: -2.24 Total: -1.52 kcal Atomic # 8 Polarization: -19.40 SS G_CDS: -2.62 Total: -22.02 kcal Atomic # 14 Polarization: -4.41 SS G_CDS: 2.04 Total: -2.36 kcal Total: -27.74 0.13 -27.62 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14589458_13422076.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -149.122 kcal (2) G-P(sol) polarization free energy of solvation -27.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -176.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -27.617 kcal (6) G-S(sol) free energy of system = (1) + (5) -176.739 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds