Wall clock time and date at job start Sun Mar 7 2021 02:30:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.45206 * 109.46720 * 2 1 4 4 C 1.34236 * 116.99523 * 179.97438 * 3 2 1 5 5 O 1.20824 * 120.00100 * 0.02562 * 4 3 2 6 6 C 1.50694 * 119.99808 * 180.02562 * 4 3 2 7 7 H 1.08998 * 109.47333 * 300.00202 * 6 4 3 8 8 C 1.52999 * 109.47245 * 59.99825 * 6 4 3 9 9 C 1.53009 * 109.47168 * 179.97438 * 8 6 4 10 10 C 1.52995 * 109.46932 * 300.00325 * 9 8 6 11 11 H 1.08999 * 109.47409 * 299.99585 * 10 9 8 12 12 N 1.46504 * 109.47009 * 179.97438 * 10 9 8 13 13 C 1.34777 * 119.99854 * 84.99752 * 12 10 9 14 14 O 1.21593 * 119.99953 * 0.02562 * 13 12 10 15 15 C 1.47537 * 120.00133 * 180.27865 * 13 12 10 16 16 C 1.40135 * 120.19429 * 179.45067 * 15 13 12 17 17 O 1.35650 * 120.14877 * 359.97438 * 16 15 13 18 18 C 1.38709 * 119.70347 * 179.77112 * 16 15 13 19 19 C 1.50691 * 119.96235 * 180.22864 * 18 16 15 20 20 O 1.42900 * 109.47335 * 285.30004 * 19 18 16 21 21 Si 1.86304 * 109.47196 * 165.29562 * 19 18 16 22 22 C 1.38055 * 120.07970 * 0.52689 * 18 16 15 23 23 C 1.38556 * 120.39303 * 359.69924 * 22 18 16 24 24 C 1.50691 * 119.84976 * 180.02562 * 23 22 18 25 25 C 1.37787 * 120.29780 * 0.04829 * 23 22 18 26 26 C 1.53001 * 109.47151 * 60.00304 * 10 9 8 27 27 C 1.53000 * 109.46945 * 299.99244 * 26 10 9 28 28 H 1.08999 * 109.47037 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.47382 * 300.00254 * 1 2 3 30 30 H 1.09007 * 109.47020 * 59.99946 * 1 2 3 31 31 H 1.08992 * 109.47230 * 240.00213 * 2 1 3 32 32 H 1.09002 * 109.46608 * 119.99899 * 2 1 3 33 33 H 1.08991 * 109.47570 * 299.99943 * 8 6 4 34 34 H 1.08999 * 109.47029 * 60.00337 * 8 6 4 35 35 H 1.09001 * 109.46963 * 180.02562 * 9 8 6 36 36 H 1.08999 * 109.46735 * 60.00323 * 9 8 6 37 37 H 0.97000 * 120.00410 * 265.00478 * 12 10 9 38 38 H 0.96699 * 114.00678 * 89.99941 * 17 16 15 39 39 H 1.09007 * 109.47176 * 45.30231 * 19 18 16 40 40 H 0.96693 * 114.00047 * 179.97438 * 20 19 18 41 41 H 1.48501 * 109.99868 * 60.00352 * 21 19 18 42 42 H 1.48498 * 109.99813 * 181.31880 * 21 19 18 43 43 H 1.08006 * 119.80735 * 179.72887 * 22 18 16 44 44 H 1.08998 * 109.47322 * 270.02180 * 24 23 22 45 45 H 1.09002 * 109.47691 * 30.02469 * 24 23 22 46 46 H 1.09007 * 109.47085 * 150.02879 * 24 23 22 47 47 H 1.08001 * 120.04524 * 179.97438 * 25 23 22 48 48 H 1.08998 * 109.47169 * 59.99749 * 26 10 9 49 49 H 1.09002 * 109.46865 * 179.97438 * 26 10 9 50 50 H 1.08995 * 109.47334 * 180.02562 * 27 26 10 51 51 H 1.08999 * 109.47097 * 300.00402 * 27 26 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3447 1.5449 0.0005 5 8 4.0808 0.5867 0.0005 6 6 3.9207 2.9374 0.0012 7 1 3.5851 3.4699 -0.8887 8 6 3.4487 3.6841 1.2504 9 6 4.0340 5.0978 1.2513 10 6 5.5618 5.0171 1.2521 11 1 5.8971 4.4845 2.1421 12 7 6.1223 6.3707 1.2524 13 6 6.2854 7.0322 2.4153 14 8 5.9678 6.5055 3.4641 15 6 6.8441 8.3977 2.4151 16 6 7.0047 9.0937 3.6208 17 8 6.6467 8.5151 4.7943 18 6 7.5354 10.3752 3.6092 19 6 7.7155 11.1269 4.9028 20 8 6.4441 11.5817 5.3704 21 14 8.8333 12.5903 4.6202 22 6 7.8931 10.9652 2.4135 23 6 7.7315 10.2823 1.2188 24 6 8.1265 10.9378 -0.0793 25 6 7.2107 9.0067 1.2123 26 6 6.0338 4.2706 0.0028 27 6 5.4486 2.8569 0.0019 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 1.8934 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 2.3602 3.7411 1.2501 34 1 3.7843 3.1517 2.1404 35 1 3.6980 5.6295 2.1416 36 1 3.6987 5.6303 0.3614 37 1 6.3758 6.7909 0.4157 38 1 7.3566 8.0140 5.2186 39 1 8.1618 10.4673 5.6472 40 1 6.4840 12.0745 6.2014 41 1 8.2362 13.4973 3.6073 42 1 9.0444 13.3217 5.8952 43 1 8.3019 11.9649 2.4092 44 1 7.2745 11.4831 -0.4851 45 1 8.9495 11.6301 0.0989 46 1 8.4415 10.1744 -0.7908 47 1 7.0860 8.4782 0.2786 48 1 5.6985 4.8032 -0.8871 49 1 7.1223 4.2135 0.0032 50 1 5.7851 2.3249 -0.8878 51 1 5.7839 2.3243 0.8919 There are 68 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 68 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14589458_13422088.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 02:30:04 Heat of formation + Delta-G solvation = -181.263385 kcal Electronic energy + Delta-G solvation = -33058.398718 eV Core-core repulsion = 28502.998162 eV Total energy + Delta-G solvation = -4555.400555 eV No. of doubly occupied orbitals = 68 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 364.181 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.95406 -41.65822 -40.38123 -38.95407 -38.05560 -37.77757 -37.62754 -35.38108 -33.30697 -33.02688 -32.63179 -31.85048 -30.65839 -27.52021 -26.77736 -26.03203 -24.67062 -23.85427 -23.51170 -22.04318 -21.76320 -21.44752 -20.77626 -19.56163 -18.77222 -18.61992 -18.29508 -17.87205 -17.66585 -17.54010 -16.76393 -16.69659 -16.12422 -15.99321 -15.60701 -15.42372 -15.24809 -15.09094 -14.92579 -14.80503 -14.52215 -14.41932 -14.11718 -14.06886 -13.81677 -13.75222 -13.48784 -13.28107 -13.08892 -12.98454 -12.96025 -12.75767 -12.64161 -12.53337 -12.40377 -12.37529 -12.20714 -11.85896 -11.72271 -11.63146 -11.54683 -11.46175 -11.34502 -10.87489 -10.47319 -10.24493 -9.99194 -9.48756 -4.96724 -0.33100 0.08818 1.08073 1.23797 1.56702 1.61773 1.72673 1.90078 2.05371 2.56506 3.15960 3.33746 3.43831 3.50435 3.59978 3.66619 3.66722 3.83565 3.90577 3.95758 4.01862 4.07004 4.10000 4.14594 4.19407 4.27983 4.28930 4.30594 4.35673 4.41335 4.52075 4.61151 4.64461 4.74508 4.81211 4.83501 4.87074 4.90961 4.92118 5.00307 5.03285 5.06483 5.08456 5.13651 5.19590 5.24499 5.25862 5.28830 5.41959 5.43913 5.48678 5.69696 6.49820 6.54909 6.64304 6.75056 7.19406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.053 3.947 3 O -0.361 6.361 4 C 0.463 3.537 5 O -0.540 6.540 6 C -0.074 4.074 7 H 0.138 0.862 8 C -0.102 4.102 9 C -0.121 4.121 10 C 0.144 3.856 11 H 0.065 0.935 12 N -0.708 5.708 13 C 0.557 3.443 14 O -0.564 6.564 15 C -0.181 4.181 16 C 0.164 3.836 17 O -0.491 6.491 18 C -0.121 4.121 19 C -0.087 4.087 20 O -0.557 6.557 21 Si 0.780 3.220 22 C -0.081 4.081 23 C -0.096 4.096 24 C -0.117 4.117 25 C -0.059 4.059 26 C -0.113 4.113 27 C -0.098 4.098 28 H 0.096 0.904 29 H 0.067 0.933 30 H 0.070 0.930 31 H 0.069 0.931 32 H 0.064 0.936 33 H 0.085 0.915 34 H 0.055 0.945 35 H 0.049 0.951 36 H 0.091 0.909 37 H 0.415 0.585 38 H 0.402 0.598 39 H 0.084 0.916 40 H 0.392 0.608 41 H -0.285 1.285 42 H -0.288 1.288 43 H 0.148 0.852 44 H 0.078 0.922 45 H 0.081 0.919 46 H 0.090 0.910 47 H 0.165 0.835 48 H 0.100 0.900 49 H 0.087 0.913 50 H 0.082 0.918 51 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.131 3.159 -6.740 8.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.020 4.020 3 O -0.278 6.278 4 C 0.308 3.692 5 O -0.430 6.430 6 C -0.093 4.093 7 H 0.156 0.844 8 C -0.140 4.140 9 C -0.159 4.159 10 C 0.040 3.960 11 H 0.083 0.917 12 N -0.361 5.361 13 C 0.346 3.654 14 O -0.443 6.443 15 C -0.185 4.185 16 C 0.117 3.883 17 O -0.303 6.303 18 C -0.122 4.122 19 C -0.195 4.195 20 O -0.367 6.367 21 Si 0.684 3.316 22 C -0.099 4.099 23 C -0.096 4.096 24 C -0.173 4.173 25 C -0.077 4.077 26 C -0.150 4.150 27 C -0.137 4.137 28 H 0.114 0.886 29 H 0.086 0.914 30 H 0.089 0.911 31 H 0.088 0.912 32 H 0.083 0.917 33 H 0.103 0.897 34 H 0.074 0.926 35 H 0.068 0.932 36 H 0.109 0.891 37 H 0.253 0.747 38 H 0.261 0.739 39 H 0.102 0.898 40 H 0.242 0.758 41 H -0.213 1.213 42 H -0.215 1.215 43 H 0.165 0.835 44 H 0.096 0.904 45 H 0.100 0.900 46 H 0.108 0.892 47 H 0.182 0.818 48 H 0.119 0.881 49 H 0.105 0.895 50 H 0.100 0.900 51 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 3.433 3.244 -6.603 8.119 hybrid contribution -0.649 -0.385 1.362 1.557 sum 2.783 2.858 -5.241 6.587 Atomic orbital electron populations 1.21825 0.90716 1.04247 1.03726 1.23240 0.96915 0.79450 1.02404 1.86522 1.24385 1.33376 1.83476 1.24340 0.80521 0.93360 0.70985 1.90667 1.61103 1.44466 1.46751 1.21260 0.96751 0.88208 1.03051 0.84403 1.21413 1.01860 0.95143 0.95599 1.21847 0.94810 0.96259 1.03032 1.21023 0.93073 0.82050 0.99880 0.91698 1.45815 1.64565 1.16844 1.08837 1.18272 0.77759 0.85393 0.84016 1.90810 1.51442 1.69295 1.32744 1.20431 1.07837 0.95198 0.95017 1.18543 0.93072 0.91162 0.85505 1.84759 1.41385 1.70264 1.33867 1.19792 1.02380 0.94521 0.95484 1.25067 0.91814 1.07032 0.95559 1.86596 1.29116 1.75772 1.45226 0.94157 0.84112 0.74790 0.78560 1.21372 0.97415 1.00057 0.91046 1.20116 0.98950 0.94185 0.96311 1.20920 1.02536 1.01560 0.92312 1.21453 0.94765 0.94727 0.96756 1.21748 1.01933 0.94241 0.97120 1.21362 0.91342 0.97338 1.03623 0.88581 0.91434 0.91078 0.91230 0.91731 0.89666 0.92573 0.93189 0.89085 0.74677 0.73900 0.89796 0.75802 1.21261 1.21471 0.83451 0.90377 0.90002 0.89166 0.81777 0.88114 0.89472 0.89953 0.92379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.38 10.29 71.98 0.74 1.12 16 2 C 0.05 0.11 6.19 71.98 0.45 0.56 16 3 O -0.36 -1.60 10.12 -51.47 -0.52 -2.12 16 4 C 0.46 2.39 7.25 71.23 0.52 2.91 16 5 O -0.54 -6.21 15.73 21.97 0.35 -5.86 16 6 C -0.07 0.12 2.63 -11.54 -0.03 0.09 16 7 H 0.14 -0.92 8.14 -2.39 -0.02 -0.94 16 8 C -0.10 0.05 5.14 30.60 0.16 0.20 16 9 C -0.12 0.08 5.49 30.60 0.17 0.25 16 10 C 0.14 -0.14 2.45 44.99 0.11 -0.03 16 11 H 0.06 0.33 7.58 -2.39 -0.02 0.31 16 12 N -0.71 1.17 5.03 -445.70 -2.24 -1.07 16 13 C 0.56 3.63 7.73 86.70 0.67 4.30 16 14 O -0.56 -8.62 14.82 16.91 0.25 -8.37 16 15 C -0.18 -0.75 5.89 -20.01 -0.12 -0.87 16 16 C 0.16 1.19 6.69 22.84 0.15 1.35 16 17 O -0.49 -4.99 10.91 -68.73 -0.75 -5.74 16 18 C -0.12 -0.47 5.30 -19.80 -0.10 -0.57 16 19 C -0.09 -0.16 2.36 71.23 0.17 0.01 16 20 O -0.56 -3.61 12.86 -148.98 -1.92 -5.52 16 21 Si 0.78 -1.98 30.19 68.60 2.07 0.09 16 22 C -0.08 0.02 8.30 22.30 0.19 0.21 16 23 C -0.10 0.31 5.87 -19.90 -0.12 0.20 16 24 C -0.12 1.04 10.00 71.23 0.71 1.76 16 25 C -0.06 0.18 9.18 22.52 0.21 0.39 16 26 C -0.11 0.73 5.39 30.59 0.16 0.89 16 27 C -0.10 0.21 4.49 30.59 0.14 0.35 16 28 H 0.10 -0.53 8.14 -2.39 -0.02 -0.55 16 29 H 0.07 -0.15 8.14 -2.39 -0.02 -0.17 16 30 H 0.07 -0.21 8.14 -2.38 -0.02 -0.23 16 31 H 0.07 0.15 8.13 -2.39 -0.02 0.13 16 32 H 0.06 0.20 8.13 -2.39 -0.02 0.18 16 33 H 0.08 -0.07 8.11 -2.39 -0.02 -0.09 16 34 H 0.06 0.16 8.14 -2.39 -0.02 0.14 16 35 H 0.05 0.28 8.14 -2.39 -0.02 0.26 16 36 H 0.09 -0.43 8.14 -2.39 -0.02 -0.45 16 37 H 0.41 -3.65 6.63 -92.71 -0.61 -4.27 16 38 H 0.40 1.10 9.06 -74.06 -0.67 0.43 16 39 H 0.08 -0.09 7.84 -2.38 -0.02 -0.11 16 40 H 0.39 -0.70 8.74 -74.06 -0.65 -1.34 16 41 H -0.29 -0.74 6.74 99.48 0.67 -0.07 16 42 H -0.29 -0.58 7.11 99.48 0.71 0.13 16 43 H 0.15 -0.51 4.87 -2.91 -0.01 -0.52 16 44 H 0.08 -0.69 8.14 -2.39 -0.02 -0.71 16 45 H 0.08 -0.84 8.08 -2.39 -0.02 -0.86 16 46 H 0.09 -1.10 8.08 -2.38 -0.02 -1.11 16 47 H 0.16 -1.77 6.40 -2.91 -0.02 -1.79 16 48 H 0.10 -1.13 8.14 -2.39 -0.02 -1.15 16 49 H 0.09 -0.64 8.14 -2.39 -0.02 -0.66 16 50 H 0.08 -0.16 8.10 -2.39 -0.02 -0.18 16 51 H 0.06 0.12 8.10 -2.39 -0.02 0.10 16 Total: 0.00 -29.48 413.46 0.45 -29.02 By element: Atomic # 1 Polarization: -12.57 SS G_CDS: -0.95 Total: -13.52 kcal Atomic # 6 Polarization: 8.93 SS G_CDS: 4.17 Total: 13.10 kcal Atomic # 7 Polarization: 1.17 SS G_CDS: -2.24 Total: -1.07 kcal Atomic # 8 Polarization: -25.02 SS G_CDS: -2.59 Total: -27.61 kcal Atomic # 14 Polarization: -1.98 SS G_CDS: 2.07 Total: 0.09 kcal Total: -29.48 0.45 -29.02 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14589458_13422088.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -152.239 kcal (2) G-P(sol) polarization free energy of solvation -29.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -181.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.024 kcal (6) G-S(sol) free energy of system = (1) + (5) -181.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds