Wall clock time and date at job start Sun Mar 7 2021 02:30:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.45193 * 109.47428 * 2 1 4 4 C 1.34222 * 117.00495 * 179.97438 * 3 2 1 5 5 O 1.20826 * 119.99719 * 0.02562 * 4 3 2 6 6 C 1.50702 * 120.00388 * 179.97438 * 4 3 2 7 7 H 1.08993 * 109.46847 * 60.00256 * 6 4 3 8 8 C 1.52999 * 109.47228 * 179.97438 * 6 4 3 9 9 C 1.52999 * 109.47031 * 179.97438 * 8 6 4 10 10 C 1.52996 * 109.47703 * 300.00331 * 9 8 6 11 11 H 1.08999 * 109.47237 * 300.00281 * 10 9 8 12 12 N 1.46493 * 109.47222 * 179.97438 * 10 9 8 13 13 C 1.34784 * 119.99864 * 155.00033 * 12 10 9 14 14 O 1.21610 * 119.99776 * 359.72391 * 13 12 10 15 15 C 1.47372 * 120.00059 * 179.72884 * 13 12 10 16 16 C 1.36418 * 127.19210 * 359.68227 * 15 13 12 17 17 O 1.33655 * 108.39522 * 179.89841 * 16 15 13 18 18 C 1.34215 * 110.90792 * 0.38669 * 17 16 15 19 19 C 1.50700 * 125.43302 * 179.76565 * 18 17 16 20 20 O 1.42905 * 109.46947 * 244.99613 * 19 18 17 21 21 Si 1.86292 * 109.47422 * 4.99783 * 19 18 17 22 22 C 1.34178 * 109.12642 * 359.76372 * 18 17 16 23 23 C 1.53000 * 109.46775 * 59.99747 * 10 9 8 24 24 C 1.52997 * 109.46936 * 300.00032 * 6 4 3 25 25 H 1.09001 * 109.47024 * 299.99892 * 1 2 3 26 26 H 1.08995 * 109.47437 * 60.00210 * 1 2 3 27 27 H 1.09002 * 109.47381 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47024 * 240.00107 * 2 1 3 29 29 H 1.09002 * 109.47021 * 120.00294 * 2 1 3 30 30 H 1.09010 * 109.46991 * 60.00477 * 8 6 4 31 31 H 1.08994 * 109.47214 * 300.00495 * 8 6 4 32 32 H 1.09003 * 109.46971 * 179.97438 * 9 8 6 33 33 H 1.08999 * 109.47003 * 60.00755 * 9 8 6 34 34 H 0.97000 * 120.00740 * 334.72725 * 12 10 9 35 35 H 1.07995 * 125.80423 * 0.02562 * 16 15 13 36 36 H 1.09002 * 109.47328 * 125.00336 * 19 18 17 37 37 H 0.96697 * 113.99747 * 60.00516 * 20 19 18 38 38 H 1.48503 * 109.99993 * 180.02562 * 21 19 18 39 39 H 1.48500 * 110.00197 * 301.31786 * 21 19 18 40 40 H 1.07997 * 127.02192 * 179.97438 * 22 18 17 41 41 H 1.09005 * 109.47224 * 60.00408 * 23 10 9 42 42 H 1.09008 * 109.47230 * 180.02562 * 23 10 9 43 43 H 1.08993 * 109.47536 * 299.99802 * 24 6 4 44 44 H 1.09000 * 109.46884 * 60.00411 * 24 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3447 1.5448 0.0005 5 8 4.0807 0.5866 0.0005 6 6 3.9207 2.9373 0.0000 7 1 3.5844 3.4699 0.8895 8 6 5.4486 2.8573 0.0014 9 6 6.0334 4.2711 0.0002 10 6 5.5630 5.0166 -1.2502 11 1 5.8996 4.4835 -2.1393 12 7 6.1225 6.3705 -1.2510 13 6 6.2870 7.0311 -2.4143 14 8 5.9757 6.5011 -3.4637 15 6 6.8443 8.3953 -2.4146 16 6 7.2346 9.1269 -1.3313 17 8 7.6840 10.3100 -1.7611 18 6 7.5995 10.3977 -3.0977 19 6 8.0113 11.5895 -3.9228 20 8 6.8600 12.1510 -4.5564 21 14 8.7978 12.8674 -2.8188 22 6 7.0897 9.2548 -3.5819 23 6 4.0351 5.0967 -1.2516 24 6 3.4498 3.6835 -1.2499 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3634 -1.0277 -0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 5.7854 2.3244 -0.8880 31 1 5.7837 2.3257 0.8920 32 1 7.1219 4.2140 0.0017 33 1 5.6968 4.8042 0.8893 34 1 6.3708 6.7932 -0.4140 35 1 7.1901 8.8042 -0.3017 36 1 8.7272 11.2756 -4.6826 37 1 6.1794 12.4527 -3.9393 38 1 9.2079 14.0482 -3.6206 39 1 7.8427 13.2804 -1.7594 40 1 6.8985 9.0155 -4.6174 41 1 3.6984 5.6299 -0.3624 42 1 3.6998 5.6275 -2.1427 43 1 3.7861 3.1509 -2.1394 44 1 2.3613 3.7406 -1.2504 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14589458_13456056.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 02:30:23 Heat of formation + Delta-G solvation = -148.314040 kcal Electronic energy + Delta-G solvation = -27061.456769 eV Core-core repulsion = 22946.786383 eV Total energy + Delta-G solvation = -4114.670386 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 324.150 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -43.70011 -41.87179 -40.83559 -39.01424 -38.15007 -37.68541 -35.43238 -33.97165 -32.78057 -32.03391 -31.84416 -30.62636 -26.78519 -25.90318 -24.55734 -23.84524 -23.43444 -22.29679 -21.91882 -21.26648 -20.55306 -19.36413 -18.74586 -17.97277 -17.68621 -17.63605 -17.52526 -17.33505 -17.05447 -16.22783 -16.10228 -15.74882 -15.51323 -15.20868 -14.96026 -14.87007 -14.54768 -14.23319 -14.10305 -13.96590 -13.83987 -13.58250 -13.46476 -13.27395 -12.95885 -12.94517 -12.76686 -12.53417 -12.40146 -12.19635 -12.13071 -11.63162 -11.54465 -11.47683 -11.39231 -11.13264 -10.96004 -10.74820 -10.15481 -9.77435 -4.90540 0.29097 0.82855 1.08605 1.18980 1.54817 1.62211 1.76973 1.96862 2.05647 2.27254 3.22568 3.43910 3.49081 3.56393 3.59352 3.64043 3.90848 3.95927 3.99501 4.02220 4.07801 4.16020 4.28838 4.29721 4.30942 4.37533 4.42554 4.45588 4.52558 4.63951 4.75555 4.81915 4.87363 4.91126 4.94725 5.04240 5.07475 5.09487 5.14075 5.14284 5.25240 5.28257 5.42160 5.48154 5.85016 6.35385 6.51559 6.64743 7.18795 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.053 3.947 3 O -0.360 6.360 4 C 0.462 3.538 5 O -0.541 6.541 6 C -0.073 4.073 7 H 0.140 0.860 8 C -0.100 4.100 9 C -0.112 4.112 10 C 0.143 3.857 11 H 0.062 0.938 12 N -0.704 5.704 13 C 0.586 3.414 14 O -0.587 6.587 15 C -0.270 4.270 16 C 0.069 3.931 17 O -0.165 6.165 18 C -0.051 4.051 19 C -0.047 4.047 20 O -0.540 6.540 21 Si 0.793 3.207 22 C -0.152 4.152 23 C -0.120 4.120 24 C -0.103 4.103 25 H 0.071 0.929 26 H 0.067 0.933 27 H 0.095 0.905 28 H 0.064 0.936 29 H 0.069 0.931 30 H 0.055 0.945 31 H 0.081 0.919 32 H 0.086 0.914 33 H 0.104 0.896 34 H 0.418 0.582 35 H 0.266 0.734 36 H 0.147 0.853 37 H 0.391 0.609 38 H -0.289 1.289 39 H -0.284 1.284 40 H 0.142 0.858 41 H 0.095 0.905 42 H 0.051 0.949 43 H 0.054 0.946 44 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.687 2.781 8.297 8.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.020 4.020 3 O -0.277 6.277 4 C 0.307 3.693 5 O -0.431 6.431 6 C -0.092 4.092 7 H 0.158 0.842 8 C -0.138 4.138 9 C -0.150 4.150 10 C 0.038 3.962 11 H 0.080 0.920 12 N -0.356 5.356 13 C 0.375 3.625 14 O -0.468 6.468 15 C -0.274 4.274 16 C -0.002 4.002 17 O -0.061 6.061 18 C -0.099 4.099 19 C -0.155 4.155 20 O -0.349 6.349 21 Si 0.695 3.305 22 C -0.172 4.172 23 C -0.159 4.159 24 C -0.141 4.141 25 H 0.090 0.910 26 H 0.086 0.914 27 H 0.114 0.886 28 H 0.082 0.918 29 H 0.087 0.913 30 H 0.074 0.926 31 H 0.100 0.900 32 H 0.105 0.895 33 H 0.122 0.878 34 H 0.256 0.744 35 H 0.281 0.719 36 H 0.164 0.836 37 H 0.241 0.759 38 H -0.216 1.216 39 H -0.211 1.211 40 H 0.160 0.840 41 H 0.113 0.887 42 H 0.070 0.930 43 H 0.072 0.928 44 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 1.057 2.984 7.495 8.136 hybrid contribution -1.335 -0.561 -0.566 1.555 sum -0.278 2.422 6.929 7.345 Atomic orbital electron populations 1.21821 0.90690 1.04239 1.03748 1.23234 0.96927 0.79480 1.02372 1.86512 1.24388 1.33338 1.83472 1.24380 0.80515 0.93425 0.70971 1.90670 1.61131 1.44521 1.46775 1.21264 0.96673 0.88149 1.03137 0.84230 1.21373 0.91435 0.97468 1.03529 1.21743 1.01920 0.94164 0.97147 1.21032 0.93265 0.82042 0.99829 0.92022 1.45681 1.64617 1.16724 1.08536 1.17529 0.76743 0.84397 0.83791 1.90796 1.52998 1.69605 1.33427 1.21481 1.14089 0.96858 0.94988 1.25356 0.93057 0.81413 1.00358 1.83724 1.65011 1.35122 1.22216 1.22657 1.06988 0.99187 0.81061 1.24726 0.92332 0.96608 1.01815 1.86653 1.30491 1.80383 1.37364 0.93441 0.85632 0.75739 0.75645 1.22569 1.02333 0.92763 0.99550 1.21843 0.94547 0.96212 1.03274 1.21416 1.01939 0.95281 0.95499 0.91040 0.91409 0.88628 0.91785 0.91265 0.92581 0.89999 0.89545 0.87772 0.74379 0.71872 0.83574 0.75940 1.21638 1.21056 0.84032 0.88685 0.92998 0.92761 0.89550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.46 10.29 71.98 0.74 1.20 16 2 C 0.05 0.09 6.19 71.98 0.45 0.53 16 3 O -0.36 -1.34 10.12 -51.34 -0.52 -1.86 16 4 C 0.46 2.08 7.26 71.24 0.52 2.60 16 5 O -0.54 -6.01 15.73 21.96 0.35 -5.66 16 6 C -0.07 0.20 2.63 -11.54 -0.03 0.17 16 7 H 0.14 -1.13 8.14 -2.39 -0.02 -1.15 16 8 C -0.10 0.29 4.49 30.59 0.14 0.43 16 9 C -0.11 0.88 5.39 30.59 0.16 1.05 16 10 C 0.14 -0.36 2.46 44.99 0.11 -0.25 16 11 H 0.06 0.28 7.57 -2.39 -0.02 0.26 16 12 N -0.70 2.95 5.07 -445.86 -2.26 0.70 16 13 C 0.59 2.83 7.78 86.65 0.67 3.51 16 14 O -0.59 -9.17 16.64 -4.06 -0.07 -9.23 16 15 C -0.27 -0.38 6.31 -18.99 -0.12 -0.50 16 16 C 0.07 -0.48 11.61 67.39 0.78 0.30 16 17 O -0.17 0.56 8.90 4.45 0.04 0.60 16 18 C -0.05 0.00 6.18 24.76 0.15 0.15 16 19 C -0.05 0.08 2.97 71.24 0.21 0.29 16 20 O -0.54 -0.90 12.88 -148.98 -1.92 -2.82 16 21 Si 0.79 -3.02 32.09 68.60 2.20 -0.82 16 22 C -0.15 -0.72 10.90 23.65 0.26 -0.46 16 23 C -0.12 0.32 5.49 30.58 0.17 0.49 16 24 C -0.10 0.18 5.13 30.58 0.16 0.34 16 25 H 0.07 -0.25 8.14 -2.39 -0.02 -0.27 16 26 H 0.07 -0.19 8.14 -2.39 -0.02 -0.21 16 27 H 0.10 -0.56 8.14 -2.39 -0.02 -0.58 16 28 H 0.06 0.17 8.13 -2.39 -0.02 0.15 16 29 H 0.07 0.12 8.13 -2.39 -0.02 0.10 16 30 H 0.06 0.09 8.10 -2.38 -0.02 0.07 16 31 H 0.08 -0.22 8.10 -2.39 -0.02 -0.24 16 32 H 0.09 -0.73 8.14 -2.39 -0.02 -0.75 16 33 H 0.10 -1.38 8.14 -2.39 -0.02 -1.40 16 34 H 0.42 -5.41 7.58 -92.71 -0.70 -6.11 16 35 H 0.27 -5.00 7.47 -2.91 -0.02 -5.02 16 36 H 0.15 -0.59 7.96 -2.39 -0.02 -0.61 16 37 H 0.39 -1.66 8.70 -74.06 -0.64 -2.30 16 38 H -0.29 -0.81 7.11 99.48 0.71 -0.10 16 39 H -0.28 -0.26 7.11 99.48 0.71 0.45 16 40 H 0.14 1.12 8.06 -2.91 -0.02 1.09 16 41 H 0.09 -0.70 8.14 -2.38 -0.02 -0.72 16 42 H 0.05 0.16 8.14 -2.38 -0.02 0.14 16 43 H 0.05 0.11 8.14 -2.39 -0.02 0.09 16 44 H 0.09 -0.20 8.11 -2.39 -0.02 -0.22 16 Total: 0.00 -28.49 371.93 1.90 -26.59 By element: Atomic # 1 Polarization: -17.04 SS G_CDS: -0.29 Total: -17.33 kcal Atomic # 6 Polarization: 5.47 SS G_CDS: 4.37 Total: 9.84 kcal Atomic # 7 Polarization: 2.95 SS G_CDS: -2.26 Total: 0.70 kcal Atomic # 8 Polarization: -16.86 SS G_CDS: -2.12 Total: -18.98 kcal Atomic # 14 Polarization: -3.02 SS G_CDS: 2.20 Total: -0.82 kcal Total: -28.49 1.90 -26.59 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14589458_13456056.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -121.727 kcal (2) G-P(sol) polarization free energy of solvation -28.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -26.587 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds