Wall clock time and date at job start Sun Mar 7 2021 02:30:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 O 1.45199 * 109.47380 * 2 1 4 4 C 1.34227 * 117.00178 * 180.02562 * 3 2 1 5 5 O 1.20830 * 119.99754 * 359.97438 * 4 3 2 6 6 C 1.50703 * 120.00131 * 180.02562 * 4 3 2 7 7 H 1.08999 * 109.46676 * 59.99983 * 6 4 3 8 8 C 1.53003 * 109.46962 * 180.02562 * 6 4 3 9 9 C 1.52997 * 109.46792 * 180.02562 * 8 6 4 10 10 C 1.53004 * 109.47383 * 299.99861 * 9 8 6 11 11 H 1.09000 * 109.46526 * 300.00118 * 10 9 8 12 12 N 1.46496 * 109.47213 * 180.02562 * 10 9 8 13 13 C 1.34776 * 119.99846 * 154.99737 * 12 10 9 14 14 O 1.21282 * 119.99940 * 0.02562 * 13 12 10 15 15 C 1.50698 * 120.00035 * 179.97438 * 13 12 10 16 16 C 1.50706 * 109.47294 * 180.02562 * 15 13 12 17 17 C 1.34847 * 125.88682 * 85.02354 * 16 15 13 18 18 C 1.40893 * 107.41636 * 180.02562 * 17 16 15 19 19 C 1.34848 * 107.41713 * 0.02562 * 18 17 16 20 20 C 1.50699 * 125.89326 * 180.02562 * 19 18 17 21 21 O 1.42901 * 109.47057 * 244.97271 * 20 19 18 22 22 Si 1.86305 * 109.46996 * 4.96608 * 20 19 18 23 23 N 1.36342 * 125.89137 * 264.71978 * 16 15 13 24 24 C 1.53001 * 109.46974 * 59.99908 * 10 9 8 25 25 C 1.52997 * 109.47140 * 300.00241 * 24 10 9 26 26 H 1.09003 * 109.47443 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.46858 * 300.00106 * 1 2 3 28 28 H 1.08997 * 109.47508 * 59.99710 * 1 2 3 29 29 H 1.09004 * 109.46858 * 239.99894 * 2 1 3 30 30 H 1.08997 * 109.47508 * 120.00290 * 2 1 3 31 31 H 1.08991 * 109.47139 * 59.99907 * 8 6 4 32 32 H 1.08999 * 109.47062 * 299.99753 * 8 6 4 33 33 H 1.09003 * 109.47487 * 179.97438 * 9 8 6 34 34 H 1.09005 * 109.47389 * 60.00205 * 9 8 6 35 35 H 0.97002 * 120.00387 * 335.00282 * 12 10 9 36 36 H 1.09001 * 109.46665 * 60.00498 * 15 13 12 37 37 H 1.09000 * 109.47722 * 300.00830 * 15 13 12 38 38 H 1.07998 * 126.29257 * 0.03112 * 17 16 15 39 39 H 1.08001 * 126.29069 * 180.02562 * 18 17 16 40 40 H 1.08990 * 109.47442 * 124.97345 * 20 19 18 41 41 H 0.96703 * 113.99791 * 59.99170 * 21 20 19 42 42 H 1.48504 * 109.99311 * 58.68789 * 22 20 19 43 43 H 1.48496 * 109.99961 * 180.02562 * 22 20 19 44 44 H 0.97000 * 125.63933 * 0.02562 * 23 16 15 45 45 H 1.09005 * 109.46706 * 60.00324 * 24 10 9 46 46 H 1.08999 * 109.46994 * 180.02562 * 24 10 9 47 47 H 1.08998 * 109.47684 * 299.99972 * 25 24 10 48 48 H 1.09005 * 109.46998 * 179.97438 * 25 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3447 1.5448 -0.0005 5 8 4.0807 0.5865 -0.0005 6 6 3.9208 2.9374 0.0000 7 1 3.5852 3.4689 0.8905 8 6 5.4487 2.8572 -0.0014 9 6 6.0335 4.2710 -0.0002 10 6 5.5609 5.0195 -1.2482 11 1 5.8961 4.4884 -2.1390 12 7 6.1214 6.3730 -1.2473 13 6 6.2840 7.0358 -2.4095 14 8 5.9659 6.5118 -3.4560 15 6 6.8600 8.4283 -2.4086 16 6 6.9358 8.9415 -3.8236 17 6 5.9371 9.5436 -4.5007 18 6 6.4285 9.8621 -5.7821 19 6 7.7086 9.4421 -5.8394 20 6 8.6302 9.5760 -7.0242 21 8 8.9625 8.2770 -7.5184 22 14 7.7805 10.5517 -8.3647 23 7 8.0278 8.8825 -4.6378 24 6 4.0330 5.0996 -1.2468 25 6 3.4482 3.6858 -1.2480 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 1.8932 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8899 31 1 5.7838 2.3257 -0.8920 32 1 5.7854 2.3244 0.8879 33 1 7.1220 4.2140 -0.0008 34 1 5.6984 4.8021 0.8907 35 1 6.3755 6.7923 -0.4103 36 1 7.8599 8.4076 -1.9752 37 1 6.2216 9.0853 -1.8179 38 1 4.9432 9.7446 -4.1290 39 1 5.8806 10.3526 -6.5731 40 1 9.5404 10.0927 -6.7200 41 1 8.1988 7.7591 -7.8079 42 1 7.4014 11.8934 -7.8535 43 1 8.6788 10.6903 -9.5391 44 1 8.8883 8.5016 -4.4025 45 1 3.6979 5.6307 -0.3558 46 1 3.6963 5.6324 -2.1360 47 1 3.7833 3.1546 -2.1388 48 1 2.3596 3.7429 -1.2465 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14589458_14644196.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 02:30:32 Heat of formation + Delta-G solvation = -126.330568 kcal Electronic energy + Delta-G solvation = -28911.365136 eV Core-core repulsion = 24739.829068 eV Total energy + Delta-G solvation = -4171.536068 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 337.177 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.31839 -41.85755 -40.77433 -39.02199 -37.73408 -37.64259 -35.28218 -33.23952 -32.69820 -31.91439 -31.82919 -30.94859 -29.13566 -25.79325 -24.91232 -23.83359 -23.64393 -22.16939 -21.60320 -21.34161 -21.14947 -20.69481 -18.95826 -18.75304 -18.08314 -17.70770 -17.62981 -17.36676 -16.73149 -16.37924 -16.16716 -15.69154 -15.34346 -15.21596 -15.03620 -14.86770 -14.62185 -14.54409 -14.27230 -14.10710 -14.01505 -13.92763 -13.81130 -13.57560 -13.36318 -13.24211 -12.95499 -12.78561 -12.68099 -12.52365 -12.37180 -12.18657 -12.10027 -11.99093 -11.62235 -11.53778 -11.45578 -11.32793 -10.87669 -10.63429 -10.02655 -9.78245 -8.94656 -4.93479 1.08350 1.12541 1.29123 1.62273 1.67764 1.68826 1.90654 1.91816 2.33357 2.53029 3.46104 3.50793 3.56451 3.63528 3.72081 3.82175 3.92449 3.96731 4.02553 4.06214 4.09264 4.19632 4.23580 4.30025 4.31938 4.35179 4.37211 4.43483 4.50982 4.62569 4.67536 4.76077 4.81575 4.82839 4.88152 4.95110 5.04342 5.09127 5.10523 5.15080 5.25984 5.27353 5.30776 5.31906 5.43210 5.56035 6.01846 6.15348 6.58593 6.64544 6.64834 6.69305 7.33234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.053 3.947 3 O -0.360 6.360 4 C 0.462 3.538 5 O -0.542 6.542 6 C -0.074 4.074 7 H 0.138 0.862 8 C -0.100 4.100 9 C -0.113 4.113 10 C 0.144 3.856 11 H 0.058 0.942 12 N -0.713 5.713 13 C 0.511 3.489 14 O -0.574 6.574 15 C -0.068 4.068 16 C 0.033 3.967 17 C -0.200 4.200 18 C -0.201 4.201 19 C -0.023 4.023 20 C -0.055 4.055 21 O -0.561 6.561 22 Si 0.801 3.199 23 N -0.539 5.539 24 C -0.118 4.118 25 C -0.103 4.103 26 H 0.095 0.905 27 H 0.070 0.930 28 H 0.068 0.932 29 H 0.064 0.936 30 H 0.068 0.932 31 H 0.055 0.945 32 H 0.078 0.922 33 H 0.082 0.918 34 H 0.100 0.900 35 H 0.419 0.581 36 H 0.126 0.874 37 H 0.144 0.856 38 H 0.142 0.858 39 H 0.153 0.847 40 H 0.106 0.894 41 H 0.395 0.605 42 H -0.284 1.284 43 H -0.294 1.294 44 H 0.417 0.583 45 H 0.092 0.908 46 H 0.055 0.945 47 H 0.053 0.947 48 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.822 2.519 5.967 7.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.020 4.020 3 O -0.276 6.276 4 C 0.307 3.693 5 O -0.432 6.432 6 C -0.092 4.092 7 H 0.156 0.844 8 C -0.138 4.138 9 C -0.151 4.151 10 C 0.039 3.961 11 H 0.077 0.923 12 N -0.366 5.366 13 C 0.298 3.702 14 O -0.453 6.453 15 C -0.108 4.108 16 C -0.081 4.081 17 C -0.224 4.224 18 C -0.226 4.226 19 C -0.137 4.137 20 C -0.164 4.164 21 O -0.369 6.369 22 Si 0.705 3.295 23 N -0.134 5.134 24 C -0.157 4.157 25 C -0.141 4.141 26 H 0.114 0.886 27 H 0.089 0.911 28 H 0.087 0.913 29 H 0.082 0.918 30 H 0.087 0.913 31 H 0.074 0.926 32 H 0.097 0.903 33 H 0.100 0.900 34 H 0.119 0.881 35 H 0.256 0.744 36 H 0.144 0.856 37 H 0.162 0.838 38 H 0.160 0.840 39 H 0.171 0.829 40 H 0.124 0.876 41 H 0.245 0.755 42 H -0.210 1.210 43 H -0.221 1.221 44 H 0.255 0.745 45 H 0.111 0.889 46 H 0.074 0.926 47 H 0.072 0.928 48 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -2.097 2.675 4.913 5.974 hybrid contribution 0.949 -0.615 0.721 1.341 sum -1.148 2.060 5.634 6.108 Atomic orbital electron populations 1.21821 0.90626 1.04248 1.03785 1.23238 0.96973 0.79465 1.02349 1.86515 1.24328 1.33347 1.83456 1.24386 0.80537 0.93416 0.70946 1.90670 1.61159 1.44539 1.46826 1.21263 0.96545 0.88167 1.03269 0.84393 1.21364 0.91583 0.97524 1.03327 1.21736 1.01611 0.94177 0.97556 1.20940 0.93283 0.82728 0.99180 0.92333 1.45908 1.64730 1.16549 1.09416 1.20978 0.77615 0.88177 0.83454 1.90757 1.51488 1.69839 1.33181 1.20259 1.05563 0.92925 0.92035 1.19962 0.88101 1.05789 0.94296 1.20850 0.99392 1.06901 0.95272 1.20927 0.94238 1.08119 0.99314 1.20990 0.97048 1.06762 0.88881 1.24979 1.01512 0.91698 0.98241 1.86431 1.38474 1.27767 1.84244 0.92915 0.84175 0.77736 0.74639 1.41914 1.13042 1.47315 1.11133 1.21829 0.94573 0.95970 1.03322 1.21432 1.01951 0.95445 0.95306 0.88626 0.91056 0.91320 0.91762 0.91341 0.92634 0.90325 0.89973 0.88142 0.74362 0.85619 0.83826 0.84031 0.82927 0.87631 0.75529 1.21042 1.22120 0.74523 0.88933 0.92574 0.92799 0.89539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.48 10.29 71.98 0.74 1.22 16 2 C 0.05 0.09 6.19 71.98 0.45 0.53 16 3 O -0.36 -1.34 10.12 -51.38 -0.52 -1.86 16 4 C 0.46 2.16 7.26 71.24 0.52 2.68 16 5 O -0.54 -6.16 15.73 21.95 0.35 -5.81 16 6 C -0.07 0.18 2.63 -11.54 -0.03 0.15 16 7 H 0.14 -1.04 8.14 -2.39 -0.02 -1.06 16 8 C -0.10 0.24 4.49 30.59 0.14 0.38 16 9 C -0.11 0.83 5.39 30.59 0.16 0.99 16 10 C 0.14 -0.46 2.45 44.99 0.11 -0.35 16 11 H 0.06 0.22 7.58 -2.39 -0.02 0.20 16 12 N -0.71 4.33 5.08 -442.53 -2.25 2.08 16 13 C 0.51 0.04 7.79 87.66 0.68 0.73 16 14 O -0.57 -6.27 15.70 -3.04 -0.05 -6.32 16 15 C -0.07 0.37 6.24 29.10 0.18 0.55 16 16 C 0.03 0.07 5.66 41.08 0.23 0.31 16 17 C -0.20 -0.93 10.76 22.14 0.24 -0.69 16 18 C -0.20 -0.88 9.37 22.14 0.21 -0.67 16 19 C -0.02 -0.09 6.50 41.08 0.27 0.17 16 20 C -0.05 -0.11 3.08 71.24 0.22 0.11 16 21 O -0.56 -1.86 12.88 -148.98 -1.92 -3.77 16 22 Si 0.80 -0.09 30.60 68.60 2.10 2.01 16 23 N -0.54 -1.49 6.08 -171.11 -1.04 -2.53 16 24 C -0.12 0.41 5.50 30.59 0.17 0.57 16 25 C -0.10 0.21 5.14 30.59 0.16 0.37 16 26 H 0.10 -0.58 8.14 -2.39 -0.02 -0.60 16 27 H 0.07 -0.26 8.14 -2.39 -0.02 -0.28 16 28 H 0.07 -0.21 8.14 -2.39 -0.02 -0.23 16 29 H 0.06 0.17 8.13 -2.39 -0.02 0.15 16 30 H 0.07 0.12 8.13 -2.39 -0.02 0.10 16 31 H 0.05 0.12 8.10 -2.39 -0.02 0.10 16 32 H 0.08 -0.14 8.10 -2.39 -0.02 -0.16 16 33 H 0.08 -0.62 8.14 -2.39 -0.02 -0.64 16 34 H 0.10 -1.21 8.14 -2.38 -0.02 -1.22 16 35 H 0.42 -5.56 8.60 -92.71 -0.80 -6.35 16 36 H 0.13 -1.35 8.14 -2.39 -0.02 -1.37 16 37 H 0.14 -1.55 8.14 -2.39 -0.02 -1.57 16 38 H 0.14 0.33 8.06 -2.91 -0.02 0.31 16 39 H 0.15 0.08 6.24 -2.91 -0.02 0.06 16 40 H 0.11 0.21 7.96 -2.39 -0.02 0.19 16 41 H 0.39 -1.16 8.70 -74.06 -0.64 -1.80 16 42 H -0.28 -1.33 7.11 99.48 0.71 -0.63 16 43 H -0.29 -1.80 7.11 99.48 0.71 -1.09 16 44 H 0.42 -0.18 8.96 -92.71 -0.83 -1.01 16 45 H 0.09 -0.71 8.14 -2.38 -0.02 -0.72 16 46 H 0.06 0.09 8.14 -2.39 -0.02 0.07 16 47 H 0.05 0.09 8.14 -2.39 -0.02 0.07 16 48 H 0.09 -0.23 8.11 -2.38 -0.02 -0.25 16 Total: 0.00 -26.77 395.37 -0.14 -26.91 By element: Atomic # 1 Polarization: -16.49 SS G_CDS: -1.25 Total: -17.74 kcal Atomic # 6 Polarization: 2.60 SS G_CDS: 4.44 Total: 7.04 kcal Atomic # 7 Polarization: 2.83 SS G_CDS: -3.29 Total: -0.45 kcal Atomic # 8 Polarization: -15.63 SS G_CDS: -2.14 Total: -17.77 kcal Atomic # 14 Polarization: -0.09 SS G_CDS: 2.10 Total: 2.01 kcal Total: -26.77 -0.14 -26.91 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14589458_14644196.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.421 kcal (2) G-P(sol) polarization free energy of solvation -26.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -26.909 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds