Wall clock time and date at job start Sun Mar 7 2021 02:30:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.45201 * 109.46884 * 2 1 4 4 C 1.34222 * 117.00137 * 179.97438 * 3 2 1 5 5 O 1.20833 * 119.99852 * 0.02562 * 4 3 2 6 6 C 1.50696 * 120.00432 * 179.71953 * 4 3 2 7 7 H 1.09000 * 109.47190 * 300.28287 * 6 4 3 8 8 C 1.53010 * 109.46632 * 60.27590 * 6 4 3 9 9 C 1.53000 * 109.46731 * 179.97438 * 8 6 4 10 10 C 1.52996 * 109.47274 * 300.00204 * 9 8 6 11 11 H 1.09002 * 109.47033 * 299.99632 * 10 9 8 12 12 N 1.46507 * 109.47155 * 180.02562 * 10 9 8 13 13 C 1.34770 * 120.00510 * 84.99699 * 12 10 9 14 14 O 1.21290 * 119.99706 * 0.02562 * 13 12 10 15 15 C 1.50700 * 120.00245 * 180.02562 * 13 12 10 16 16 C 1.53541 * 109.82082 * 80.86291 * 15 13 12 17 17 C 1.53039 * 108.56234 * 180.48637 * 16 15 13 18 18 C 1.50205 * 110.31673 * 310.43345 * 17 16 15 19 19 C 1.50702 * 118.54477 * 200.02515 * 18 17 16 20 20 O 1.42895 * 109.47066 * 69.99742 * 19 18 17 21 21 Si 1.86292 * 109.47253 * 189.99815 * 19 18 17 22 22 C 1.31111 * 122.90665 * 20.04880 * 18 17 16 23 23 N 1.38963 * 121.87356 * 359.65980 * 22 18 17 24 24 C 1.52996 * 109.47334 * 60.00276 * 10 9 8 25 25 C 1.52996 * 109.47298 * 180.27351 * 6 4 3 26 26 H 1.08997 * 109.47194 * 60.00322 * 1 2 3 27 27 H 1.08999 * 109.47003 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47361 * 299.99753 * 1 2 3 29 29 H 1.08997 * 109.46911 * 239.99959 * 2 1 3 30 30 H 1.08997 * 109.46745 * 119.99968 * 2 1 3 31 31 H 1.08990 * 109.47121 * 300.00016 * 8 6 4 32 32 H 1.09000 * 109.46764 * 60.00436 * 8 6 4 33 33 H 1.09006 * 109.46567 * 180.02562 * 9 8 6 34 34 H 1.09000 * 109.47116 * 60.00682 * 9 8 6 35 35 H 0.97003 * 119.99310 * 265.00194 * 12 10 9 36 36 H 1.09000 * 109.81180 * 320.00140 * 15 13 12 37 37 H 1.09002 * 109.62465 * 300.21475 * 16 15 13 38 38 H 1.09005 * 109.62290 * 60.77042 * 16 15 13 39 39 H 1.09005 * 109.32429 * 70.68961 * 17 16 15 40 40 H 1.08996 * 109.33036 * 190.16563 * 17 16 15 41 41 H 1.09002 * 109.47122 * 309.99885 * 19 18 17 42 42 H 0.96705 * 114.00223 * 59.99656 * 20 19 18 43 43 H 1.48507 * 109.99987 * 58.68171 * 21 19 18 44 44 H 1.48500 * 110.00167 * 180.02562 * 21 19 18 45 45 H 1.08003 * 119.07305 * 179.57434 * 22 18 17 46 46 H 0.96998 * 120.58643 * 193.28631 * 23 22 18 47 47 H 1.09004 * 109.47074 * 180.02562 * 24 10 9 48 48 H 1.09000 * 109.46855 * 59.99645 * 24 10 9 49 49 H 1.08994 * 109.47515 * 300.00215 * 25 6 4 50 50 H 1.09006 * 109.46938 * 60.00806 * 25 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3446 1.5449 0.0005 5 8 4.0807 0.5867 0.0005 6 6 3.9206 2.9375 -0.0058 7 1 3.5816 3.4668 -0.8963 8 6 3.4532 3.6883 1.2428 9 6 4.0386 5.1019 1.2367 10 6 5.5664 5.0213 1.2320 11 1 5.9050 4.4917 2.1226 12 7 6.1269 6.3749 1.2268 13 6 6.2943 7.0395 2.3872 14 8 5.9815 6.5168 3.4360 15 6 6.8703 8.4321 2.3817 16 6 5.7737 9.4476 2.0300 17 6 6.3913 10.8478 2.0206 18 6 7.1814 11.0778 3.2772 19 6 7.4828 12.4958 3.6890 20 8 6.2781 13.1334 4.1180 21 14 8.7133 12.4881 5.0877 22 6 7.6209 10.0994 4.0313 23 7 7.3774 8.7671 3.7205 24 6 6.0337 4.2705 -0.0165 25 6 5.4485 2.8574 -0.0107 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 2.3648 3.7453 1.2462 32 1 3.7923 3.1589 2.1332 33 1 3.7059 5.6366 2.1264 34 1 3.6999 5.6315 0.3462 35 1 6.3773 6.7928 0.3880 36 1 7.6791 8.4945 1.6537 37 1 5.3667 9.2204 1.0447 38 1 4.9802 9.4027 2.7760 39 1 7.0497 10.9459 1.1574 40 1 5.5977 11.5918 1.9521 41 1 7.8997 13.0395 2.8413 42 1 5.8513 12.7021 4.8710 43 1 9.9590 11.7994 4.6644 44 1 9.0184 13.8806 5.5035 45 1 8.1894 10.3355 4.9188 46 1 7.5379 8.0701 4.3757 47 1 7.1222 4.2127 -0.0195 48 1 5.6951 4.8002 -0.9069 49 1 5.7875 2.3281 0.8798 50 1 5.7815 2.3225 -0.9002 There are 64 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 64 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14589458_15413834.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 02:30:36 Heat of formation + Delta-G solvation = -149.016035 kcal Electronic energy + Delta-G solvation = -29852.446097 eV Core-core repulsion = 25652.614834 eV Total energy + Delta-G solvation = -4199.831262 eV No. of doubly occupied orbitals = 64 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 339.192 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.90896 -41.39446 -39.87916 -38.89886 -37.70601 -37.28365 -35.41709 -33.16609 -33.14546 -32.67505 -31.84200 -30.85107 -27.52463 -25.65021 -25.15697 -23.92178 -23.77505 -23.37461 -22.04759 -21.56450 -20.88057 -19.33398 -19.07813 -18.73610 -18.00274 -17.69322 -17.63376 -17.31416 -16.77670 -16.33893 -15.87365 -15.79853 -15.64534 -15.32095 -15.22254 -14.99545 -14.91576 -14.56505 -14.43620 -14.20951 -14.01020 -13.89707 -13.77953 -13.47879 -13.26063 -13.08198 -12.96137 -12.91300 -12.76899 -12.53107 -12.39049 -12.20433 -12.19077 -11.88026 -11.83765 -11.63080 -11.54467 -11.46544 -11.34495 -11.24195 -10.81160 -10.16399 -10.11210 -8.42624 -4.97930 1.08449 1.38441 1.41766 1.50030 1.61727 1.63957 1.92477 2.00941 2.67279 3.43383 3.51016 3.60133 3.65724 3.76026 3.80949 3.90532 3.92099 3.96233 4.02294 4.06457 4.10754 4.16905 4.29074 4.30974 4.32177 4.36771 4.42799 4.48899 4.59579 4.62839 4.65603 4.75286 4.81972 4.82217 4.87764 4.93157 5.04347 5.06967 5.08083 5.09771 5.14552 5.23354 5.25234 5.28333 5.33307 5.42423 5.48505 5.61326 6.28001 6.50325 6.64490 6.84867 6.93265 7.15798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.053 3.947 3 O -0.360 6.360 4 C 0.462 3.538 5 O -0.542 6.542 6 C -0.074 4.074 7 H 0.138 0.862 8 C -0.103 4.103 9 C -0.119 4.119 10 C 0.143 3.857 11 H 0.065 0.935 12 N -0.707 5.707 13 C 0.514 3.486 14 O -0.571 6.571 15 C 0.137 3.863 16 C -0.117 4.117 17 C -0.054 4.054 18 C -0.292 4.292 19 C -0.047 4.047 20 O -0.564 6.564 21 Si 0.752 3.248 22 C 0.145 3.855 23 N -0.738 5.738 24 C -0.114 4.114 25 C -0.099 4.099 26 H 0.070 0.930 27 H 0.095 0.905 28 H 0.068 0.932 29 H 0.068 0.932 30 H 0.064 0.936 31 H 0.086 0.914 32 H 0.055 0.945 33 H 0.056 0.944 34 H 0.092 0.908 35 H 0.419 0.581 36 H 0.108 0.892 37 H 0.100 0.900 38 H 0.060 0.940 39 H 0.070 0.930 40 H 0.070 0.930 41 H 0.094 0.906 42 H 0.391 0.609 43 H -0.290 1.290 44 H -0.307 1.307 45 H 0.146 0.854 46 H 0.408 0.592 47 H 0.083 0.917 48 H 0.100 0.900 49 H 0.057 0.943 50 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.060 -0.337 -3.714 4.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.020 4.020 3 O -0.277 6.277 4 C 0.307 3.693 5 O -0.432 6.432 6 C -0.093 4.093 7 H 0.155 0.845 8 C -0.141 4.141 9 C -0.158 4.158 10 C 0.039 3.961 11 H 0.083 0.917 12 N -0.359 5.359 13 C 0.300 3.700 14 O -0.450 6.450 15 C 0.028 3.972 16 C -0.156 4.156 17 C -0.091 4.091 18 C -0.302 4.302 19 C -0.158 4.158 20 O -0.372 6.372 21 Si 0.660 3.340 22 C 0.024 3.976 23 N -0.370 5.370 24 C -0.152 4.152 25 C -0.138 4.138 26 H 0.089 0.911 27 H 0.114 0.886 28 H 0.087 0.913 29 H 0.086 0.914 30 H 0.083 0.917 31 H 0.104 0.896 32 H 0.074 0.926 33 H 0.075 0.925 34 H 0.110 0.890 35 H 0.257 0.743 36 H 0.125 0.875 37 H 0.118 0.882 38 H 0.078 0.922 39 H 0.088 0.912 40 H 0.088 0.912 41 H 0.111 0.889 42 H 0.240 0.760 43 H -0.217 1.217 44 H -0.236 1.236 45 H 0.163 0.837 46 H 0.245 0.755 47 H 0.102 0.898 48 H 0.118 0.882 49 H 0.076 0.924 50 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -1.199 -0.419 -3.320 3.555 hybrid contribution 0.250 -0.420 -0.403 0.634 sum -0.949 -0.839 -3.723 3.933 Atomic orbital electron populations 1.21822 0.90664 1.04239 1.03771 1.23237 0.96944 0.79467 1.02358 1.86514 1.24362 1.33338 1.83460 1.24385 0.80525 0.93426 0.70960 1.90673 1.61141 1.44546 1.46806 1.21267 0.96608 0.88146 1.03267 0.84457 1.21429 1.01969 0.95345 0.95369 1.21836 0.94458 0.96083 1.03383 1.21012 0.93317 0.82228 0.99567 0.91714 1.45873 1.64154 1.16587 1.09245 1.20825 0.77643 0.87620 0.83886 1.90731 1.51766 1.69740 1.32763 1.21108 0.97840 0.90768 0.87493 1.21801 0.96356 0.94230 1.03205 1.19950 0.98404 0.95684 0.95104 1.20961 1.11363 0.94049 1.03827 1.24732 0.94119 0.91989 1.04976 1.86429 1.39964 1.56119 1.54669 0.94269 0.77363 0.78826 0.83497 1.20483 0.95774 0.83463 0.97867 1.44396 1.72544 1.05797 1.14310 1.21734 1.01763 0.94201 0.97457 1.21354 0.91510 0.97455 1.03444 0.91078 0.88645 0.91326 0.91353 0.91725 0.89567 0.92590 0.92489 0.88960 0.74346 0.87466 0.88184 0.92165 0.91180 0.91176 0.88850 0.75991 1.21695 1.23621 0.83695 0.75544 0.89818 0.88194 0.92439 0.90330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.53 10.29 71.98 0.74 1.27 16 2 C 0.05 0.06 6.19 71.98 0.45 0.51 16 3 O -0.36 -1.15 10.13 -51.34 -0.52 -1.67 16 4 C 0.46 1.85 7.25 71.23 0.52 2.36 16 5 O -0.54 -5.78 15.73 21.94 0.35 -5.44 16 6 C -0.07 0.24 2.63 -11.54 -0.03 0.21 16 7 H 0.14 -1.12 8.14 -2.39 -0.02 -1.14 16 8 C -0.10 0.32 5.14 30.60 0.16 0.48 16 9 C -0.12 0.55 5.49 30.59 0.17 0.72 16 10 C 0.14 -0.65 2.45 44.99 0.11 -0.54 16 11 H 0.06 0.11 7.58 -2.39 -0.02 0.09 16 12 N -0.71 4.68 5.08 -442.53 -2.25 2.43 16 13 C 0.51 -0.37 7.05 87.66 0.62 0.25 16 14 O -0.57 -4.62 15.74 -3.06 -0.05 -4.67 16 15 C 0.14 -0.49 3.36 44.33 0.15 -0.34 16 16 C -0.12 0.48 5.47 30.79 0.17 0.65 16 17 C -0.05 0.11 5.85 29.71 0.17 0.28 16 18 C -0.29 0.21 5.37 -16.75 -0.09 0.12 16 19 C -0.05 -0.02 2.81 71.24 0.20 0.18 16 20 O -0.56 -1.12 12.88 -148.98 -1.92 -3.03 16 21 Si 0.75 -0.48 29.72 68.60 2.04 1.55 16 22 C 0.14 -0.27 9.62 83.41 0.80 0.54 16 23 N -0.74 0.83 5.47 -328.97 -1.80 -0.97 16 24 C -0.11 0.94 5.39 30.58 0.16 1.10 16 25 C -0.10 0.33 4.49 30.58 0.14 0.47 16 26 H 0.07 -0.28 8.14 -2.39 -0.02 -0.30 16 27 H 0.09 -0.60 8.14 -2.39 -0.02 -0.62 16 28 H 0.07 -0.23 8.14 -2.39 -0.02 -0.25 16 29 H 0.07 0.10 8.13 -2.39 -0.02 0.08 16 30 H 0.06 0.14 8.13 -2.39 -0.02 0.12 16 31 H 0.09 -0.30 8.12 -2.39 -0.02 -0.32 16 32 H 0.06 0.02 8.14 -2.39 -0.02 0.00 16 33 H 0.06 0.01 8.14 -2.38 -0.02 -0.01 16 34 H 0.09 -0.78 8.14 -2.39 -0.02 -0.80 16 35 H 0.42 -5.45 8.60 -92.71 -0.80 -6.25 16 36 H 0.11 -0.77 8.14 -2.39 -0.02 -0.78 16 37 H 0.10 -0.86 8.14 -2.39 -0.02 -0.88 16 38 H 0.06 0.00 8.14 -2.38 -0.02 -0.02 16 39 H 0.07 -0.23 8.14 -2.38 -0.02 -0.25 16 40 H 0.07 0.01 8.14 -2.39 -0.02 -0.01 16 41 H 0.09 0.21 7.96 -2.39 -0.02 0.19 16 42 H 0.39 -2.18 8.70 -74.05 -0.64 -2.82 16 43 H -0.29 -1.20 7.11 99.48 0.71 -0.49 16 44 H -0.31 -2.37 7.11 99.48 0.71 -1.67 16 45 H 0.15 -0.79 4.48 -2.91 -0.01 -0.81 16 46 H 0.41 -0.13 8.10 -92.71 -0.75 -0.88 16 47 H 0.08 -0.71 8.14 -2.38 -0.02 -0.73 16 48 H 0.10 -1.26 8.14 -2.39 -0.02 -1.28 16 49 H 0.06 0.05 8.10 -2.39 -0.02 0.03 16 50 H 0.08 -0.20 8.10 -2.38 -0.02 -0.22 16 Total: 0.00 -22.69 397.83 -0.91 -23.61 By element: Atomic # 1 Polarization: -18.86 SS G_CDS: -1.20 Total: -20.05 kcal Atomic # 6 Polarization: 3.81 SS G_CDS: 4.43 Total: 8.24 kcal Atomic # 7 Polarization: 5.50 SS G_CDS: -4.05 Total: 1.46 kcal Atomic # 8 Polarization: -12.67 SS G_CDS: -2.14 Total: -14.81 kcal Atomic # 14 Polarization: -0.48 SS G_CDS: 2.04 Total: 1.55 kcal Total: -22.69 -0.91 -23.61 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14589458_15413834.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -125.407 kcal (2) G-P(sol) polarization free energy of solvation -22.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.609 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds