Wall clock time and date at job start Sun Mar 7 2021 02:30:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.45203 * 109.46837 * 2 1 4 4 C 1.34226 * 116.99798 * 180.02562 * 3 2 1 5 5 O 1.20824 * 119.99959 * 359.97438 * 4 3 2 6 6 C 1.50703 * 119.99900 * 180.02562 * 4 3 2 7 7 H 1.09001 * 109.46980 * 59.99650 * 6 4 3 8 8 C 1.53000 * 109.46912 * 179.97438 * 6 4 3 9 9 C 1.52997 * 109.47060 * 179.97438 * 8 6 4 10 10 C 1.53006 * 109.47127 * 300.00449 * 9 8 6 11 11 H 1.09001 * 109.47002 * 299.99574 * 10 9 8 12 12 N 1.46504 * 109.46883 * 180.02562 * 10 9 8 13 13 C 1.34773 * 120.00111 * 84.99828 * 12 10 9 14 14 O 1.21626 * 119.99981 * 0.02562 * 13 12 10 15 15 C 1.47266 * 119.99819 * 179.97438 * 13 12 10 16 16 C 1.36331 * 126.96643 * 179.97438 * 15 13 12 17 17 C 1.50998 * 126.79803 * 0.04943 * 16 15 13 18 18 C 1.53384 * 108.26024 * 164.30504 * 17 16 15 19 19 C 1.53162 * 109.04443 * 48.45495 * 18 17 16 20 20 C 1.53130 * 109.52780 * 290.42889 * 19 18 17 21 21 N 1.35219 * 108.66023 * 180.02562 * 16 15 13 22 22 C 1.36422 * 109.89547 * 359.97231 * 21 16 15 23 23 C 1.50706 * 125.49136 * 180.02562 * 22 21 16 24 24 O 1.42901 * 109.47096 * 329.99805 * 23 22 21 25 25 Si 1.86294 * 109.47234 * 210.00069 * 23 22 21 26 26 C 1.34498 * 109.01389 * 359.73341 * 22 21 16 27 27 C 1.52997 * 109.47164 * 59.99836 * 10 9 8 28 28 C 1.52996 * 109.46946 * 299.99539 * 6 4 3 29 29 H 1.08993 * 109.46973 * 59.99936 * 1 2 3 30 30 H 1.08998 * 109.46790 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47218 * 300.00037 * 1 2 3 32 32 H 1.09000 * 109.47218 * 239.99963 * 2 1 3 33 33 H 1.09003 * 109.46958 * 120.00063 * 2 1 3 34 34 H 1.09002 * 109.47398 * 300.00078 * 8 6 4 35 35 H 1.09001 * 109.47194 * 60.00258 * 8 6 4 36 36 H 1.08998 * 109.47533 * 59.99948 * 9 8 6 37 37 H 1.08996 * 109.47853 * 180.02562 * 9 8 6 38 38 H 0.97003 * 119.99624 * 264.99510 * 12 10 9 39 39 H 1.09002 * 109.70371 * 283.99785 * 17 16 15 40 40 H 1.09000 * 109.70258 * 44.56643 * 17 16 15 41 41 H 1.08999 * 109.54524 * 168.33091 * 18 17 16 42 42 H 1.09006 * 109.54184 * 288.49930 * 18 17 16 43 43 H 1.08998 * 109.46498 * 50.45188 * 19 18 17 44 44 H 1.09011 * 109.45746 * 170.42493 * 19 18 17 45 45 H 1.08995 * 109.56509 * 170.83841 * 20 19 18 46 46 H 1.09001 * 109.56541 * 291.06821 * 20 19 18 47 47 H 1.09001 * 109.47033 * 89.99819 * 23 22 21 48 48 H 0.96696 * 114.00025 * 300.00671 * 24 23 22 49 49 H 1.48509 * 110.00122 * 58.67694 * 25 23 22 50 50 H 1.48494 * 110.00235 * 180.02562 * 25 23 22 51 51 H 1.08002 * 126.81537 * 180.25896 * 26 22 21 52 52 H 1.09002 * 109.47045 * 180.02562 * 27 10 9 53 53 H 1.09001 * 109.47375 * 59.99966 * 27 10 9 54 54 H 1.08992 * 109.47554 * 299.99877 * 28 6 4 55 55 H 1.09004 * 109.47108 * 60.00127 * 28 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5449 -0.0005 5 8 4.0807 0.5867 -0.0005 6 6 3.9207 2.9375 0.0000 7 1 3.5851 3.4691 0.8905 8 6 5.4486 2.8574 -0.0001 9 6 6.0334 4.2712 -0.0002 10 6 5.5616 5.0182 -1.2494 11 1 5.8974 4.4861 -2.1395 12 7 6.1221 6.3718 -1.2498 13 6 7.3570 6.5897 -1.7435 14 8 8.0061 5.6627 -2.1892 15 6 7.9201 7.9505 -1.7443 16 6 9.1459 8.3302 -2.2047 17 6 10.1982 7.4374 -2.8176 18 6 11.2227 8.3250 -3.5354 19 6 11.6472 9.4581 -2.5964 20 6 10.4784 10.4285 -2.4042 21 7 9.2813 9.6636 -2.0256 22 6 8.1536 10.1716 -1.4500 23 6 7.9278 11.6189 -1.0958 24 8 9.1793 12.2333 -0.7822 25 14 6.7956 11.7279 0.3796 26 6 7.2732 9.1735 -1.2554 27 6 4.0337 5.0983 -1.2492 28 6 3.4486 3.6851 -1.2486 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8900 34 1 5.7846 2.3249 0.8896 35 1 5.7845 2.3257 -0.8904 36 1 5.6975 4.8035 0.8897 37 1 7.1218 4.2143 -0.0008 38 1 5.6042 7.1112 -0.8947 39 1 10.6939 6.8629 -2.0350 40 1 9.7334 6.7590 -3.5330 41 1 12.0948 7.7297 -3.8061 42 1 10.7741 8.7447 -4.4359 43 1 11.9357 9.0413 -1.6315 44 1 12.4939 9.9908 -3.0297 45 1 10.7211 11.1406 -1.6155 46 1 10.2919 10.9643 -3.3349 47 1 7.4724 12.1333 -1.9421 48 1 9.6417 11.8259 -0.0371 49 1 7.3906 11.0030 1.5311 50 1 6.5646 13.1502 0.7386 51 1 6.2871 9.2555 -0.8226 52 1 3.6976 5.6300 -2.1394 53 1 3.6978 5.6304 -0.3592 54 1 3.7841 3.1536 -2.1390 55 1 2.3600 3.7421 -1.2481 There are 71 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 71 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14589458_16915396.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 02:30:45 Heat of formation + Delta-G solvation = -126.927356 kcal Electronic energy + Delta-G solvation = -35387.727171 eV Core-core repulsion = 30776.863846 eV Total energy + Delta-G solvation = -4610.863325 eV No. of doubly occupied orbitals = 71 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 377.208 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -42.77216 -41.82252 -40.58099 -38.89322 -38.07638 -37.63938 -36.89832 -35.17854 -33.50079 -32.71761 -31.78256 -31.24483 -30.98180 -29.22828 -26.61542 -25.54495 -24.66672 -24.20669 -23.63746 -23.22151 -21.87274 -21.74009 -21.13518 -20.70675 -19.59223 -18.88601 -18.71440 -17.65086 -17.64100 -17.40188 -17.09967 -16.66867 -16.56308 -16.16077 -15.85374 -15.50843 -15.32062 -15.29222 -15.18081 -15.08842 -14.94612 -14.69261 -14.55520 -14.39648 -14.33967 -14.00323 -13.84464 -13.72131 -13.43918 -13.20981 -13.15455 -12.90860 -12.81523 -12.72391 -12.50790 -12.37042 -12.31743 -12.15325 -12.12662 -12.01206 -11.82843 -11.75206 -11.59828 -11.51369 -11.33808 -11.29386 -10.85016 -10.79595 -10.01285 -9.52325 -9.02174 -4.87908 0.75197 1.09043 1.12449 1.46765 1.64499 1.71398 1.81449 2.06620 2.45206 2.59771 3.20035 3.47620 3.48582 3.57965 3.66993 3.68706 3.69041 3.78143 3.81241 3.96539 3.98962 4.06238 4.11639 4.22041 4.25152 4.30569 4.33735 4.36813 4.38453 4.39219 4.40929 4.48130 4.54085 4.64673 4.68925 4.75462 4.77391 4.81026 4.83622 4.87310 4.91673 4.93664 4.99997 5.01271 5.08353 5.13467 5.16191 5.17522 5.18635 5.20040 5.33168 5.38554 5.46486 5.65469 5.77018 6.04883 6.23435 6.35391 6.68501 6.77266 7.44817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.053 3.947 3 O -0.356 6.356 4 C 0.463 3.537 5 O -0.545 6.545 6 C -0.073 4.073 7 H 0.139 0.861 8 C -0.097 4.097 9 C -0.119 4.119 10 C 0.145 3.855 11 H 0.061 0.939 12 N -0.708 5.708 13 C 0.589 3.411 14 O -0.592 6.592 15 C -0.255 4.255 16 C 0.099 3.901 17 C -0.053 4.053 18 C -0.125 4.125 19 C -0.134 4.134 20 C 0.096 3.904 21 N -0.429 5.429 22 C -0.020 4.020 23 C -0.057 4.057 24 O -0.545 6.545 25 Si 0.806 3.194 26 C -0.157 4.157 27 C -0.113 4.113 28 C -0.103 4.103 29 H 0.070 0.930 30 H 0.094 0.906 31 H 0.070 0.930 32 H 0.064 0.936 33 H 0.065 0.935 34 H 0.066 0.934 35 H 0.052 0.948 36 H 0.089 0.911 37 H 0.048 0.952 38 H 0.416 0.584 39 H 0.077 0.923 40 H 0.079 0.921 41 H 0.087 0.913 42 H 0.066 0.934 43 H 0.070 0.930 44 H 0.106 0.894 45 H 0.112 0.888 46 H 0.084 0.916 47 H 0.130 0.870 48 H 0.385 0.615 49 H -0.291 1.291 50 H -0.298 1.298 51 H 0.188 0.812 52 H 0.088 0.912 53 H 0.102 0.898 54 H 0.058 0.942 55 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.169 5.834 1.264 7.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.021 4.021 3 O -0.273 6.273 4 C 0.308 3.692 5 O -0.435 6.435 6 C -0.092 4.092 7 H 0.157 0.843 8 C -0.136 4.136 9 C -0.157 4.157 10 C 0.040 3.960 11 H 0.079 0.921 12 N -0.359 5.359 13 C 0.379 3.621 14 O -0.474 6.474 15 C -0.264 4.264 16 C -0.019 4.019 17 C -0.091 4.091 18 C -0.162 4.162 19 C -0.171 4.171 20 C -0.024 4.024 21 N -0.105 5.105 22 C -0.128 4.128 23 C -0.165 4.165 24 O -0.353 6.353 25 Si 0.710 3.290 26 C -0.181 4.181 27 C -0.151 4.151 28 C -0.141 4.141 29 H 0.089 0.911 30 H 0.112 0.888 31 H 0.090 0.910 32 H 0.082 0.918 33 H 0.084 0.916 34 H 0.085 0.915 35 H 0.071 0.929 36 H 0.108 0.892 37 H 0.066 0.934 38 H 0.253 0.747 39 H 0.096 0.904 40 H 0.098 0.902 41 H 0.106 0.894 42 H 0.085 0.915 43 H 0.089 0.911 44 H 0.125 0.875 45 H 0.130 0.870 46 H 0.102 0.898 47 H 0.147 0.853 48 H 0.235 0.765 49 H -0.217 1.217 50 H -0.226 1.226 51 H 0.205 0.795 52 H 0.107 0.893 53 H 0.121 0.879 54 H 0.076 0.924 55 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -4.519 5.767 1.179 7.421 hybrid contribution 1.494 -0.465 0.221 1.580 sum -3.025 5.301 1.400 6.262 Atomic orbital electron populations 1.21815 0.90473 1.04199 1.03893 1.23237 0.97042 0.79553 1.02240 1.86509 1.24084 1.33199 1.83468 1.24390 0.80568 0.93371 0.70893 1.90675 1.61286 1.44675 1.46899 1.21251 0.95566 0.88362 1.04023 0.84334 1.21320 0.92435 0.97168 1.02641 1.21834 1.00020 0.94710 0.99166 1.20970 0.94527 0.82551 0.97907 0.92115 1.45647 1.16348 1.10764 1.63167 1.17573 0.81340 0.87026 0.76177 1.90749 1.61350 1.45779 1.49517 1.20006 0.96914 0.93406 1.16122 1.20553 0.96437 0.84345 1.00611 1.20406 0.93402 0.95693 0.99602 1.21695 0.99241 0.97049 0.98242 1.21923 0.97593 0.96592 1.01008 1.22411 0.82479 0.94415 1.03104 1.44031 1.14445 1.06099 1.45950 1.20988 0.88759 0.96748 1.06320 1.25090 0.92447 0.87401 1.11568 1.86566 1.33524 1.60295 1.54936 0.93461 0.84806 0.77990 0.72788 1.22027 1.00711 0.88989 1.06349 1.21745 0.91323 0.96664 1.05347 1.21462 1.02491 0.95250 0.94889 0.91064 0.88778 0.91049 0.91763 0.91645 0.91531 0.92918 0.89204 0.93363 0.74651 0.90427 0.90228 0.89426 0.91525 0.91106 0.87535 0.86973 0.89786 0.85276 0.76530 1.21743 1.22577 0.79543 0.89317 0.87935 0.92354 0.88244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.54 10.29 71.98 0.74 1.28 16 2 C 0.05 0.08 6.19 71.98 0.45 0.53 16 3 O -0.36 -1.19 10.12 -51.38 -0.52 -1.71 16 4 C 0.46 2.48 7.26 71.24 0.52 3.00 16 5 O -0.55 -7.09 15.73 21.97 0.35 -6.74 16 6 C -0.07 0.10 2.63 -11.54 -0.03 0.07 16 7 H 0.14 -0.92 8.14 -2.39 -0.02 -0.94 16 8 C -0.10 -0.23 4.49 30.59 0.14 -0.10 16 9 C -0.12 -0.08 5.49 30.60 0.17 0.09 16 10 C 0.15 -0.05 2.45 44.99 0.11 0.06 16 11 H 0.06 0.37 7.57 -2.39 -0.02 0.35 16 12 N -0.71 0.37 5.07 -445.94 -2.26 -1.89 16 13 C 0.59 4.41 7.77 86.62 0.67 5.08 16 14 O -0.59 -9.24 15.00 -4.11 -0.06 -9.31 16 15 C -0.25 -1.31 6.28 -19.12 -0.12 -1.43 16 16 C 0.10 0.55 6.57 41.69 0.27 0.82 16 17 C -0.05 -0.27 5.32 30.07 0.16 -0.11 16 18 C -0.12 0.07 5.98 30.78 0.18 0.26 16 19 C -0.13 0.47 5.92 30.69 0.18 0.65 16 20 C 0.10 -0.22 6.22 86.32 0.54 0.31 16 21 N -0.43 -0.69 3.11 -493.61 -1.54 -2.22 16 22 C -0.02 0.01 6.14 40.99 0.25 0.27 16 23 C -0.06 0.23 3.00 71.24 0.21 0.45 16 24 O -0.55 1.27 10.28 -148.98 -1.53 -0.26 16 25 Si 0.81 -4.69 31.12 68.60 2.13 -2.55 16 26 C -0.16 0.26 9.09 23.64 0.21 0.47 16 27 C -0.11 0.81 5.39 30.58 0.16 0.98 16 28 C -0.10 0.46 5.13 30.58 0.16 0.62 16 29 H 0.07 -0.28 8.14 -2.39 -0.02 -0.30 16 30 H 0.09 -0.58 8.14 -2.39 -0.02 -0.60 16 31 H 0.07 -0.29 8.14 -2.39 -0.02 -0.31 16 32 H 0.06 0.17 8.13 -2.39 -0.02 0.15 16 33 H 0.07 0.15 8.13 -2.39 -0.02 0.13 16 34 H 0.07 0.28 8.10 -2.39 -0.02 0.26 16 35 H 0.05 0.37 8.10 -2.39 -0.02 0.35 16 36 H 0.09 -0.32 8.14 -2.39 -0.02 -0.34 16 37 H 0.05 0.32 8.14 -2.39 -0.02 0.30 16 38 H 0.42 -3.12 7.73 -92.71 -0.72 -3.83 16 39 H 0.08 0.48 8.14 -2.39 -0.02 0.46 16 40 H 0.08 0.70 7.40 -2.39 -0.02 0.68 16 41 H 0.09 -0.21 8.14 -2.39 -0.02 -0.23 16 42 H 0.07 0.00 8.12 -2.38 -0.02 -0.02 16 43 H 0.07 -0.17 8.11 -2.39 -0.02 -0.19 16 44 H 0.11 -0.74 8.14 -2.38 -0.02 -0.76 16 45 H 0.11 -0.49 5.68 -2.39 -0.01 -0.51 16 46 H 0.08 -0.21 8.14 -2.39 -0.02 -0.23 16 47 H 0.13 -0.73 7.96 -2.39 -0.02 -0.75 16 48 H 0.39 -2.56 8.27 -74.06 -0.61 -3.17 16 49 H -0.29 -0.01 7.11 99.48 0.71 0.70 16 50 H -0.30 -0.45 7.11 99.48 0.71 0.26 16 51 H 0.19 -1.89 6.54 -2.91 -0.02 -1.91 16 52 H 0.09 -0.72 8.14 -2.39 -0.02 -0.74 16 53 H 0.10 -1.22 8.14 -2.39 -0.02 -1.24 16 54 H 0.06 -0.07 8.14 -2.39 -0.02 -0.09 16 55 H 0.10 -0.67 8.11 -2.38 -0.02 -0.69 16 Total: 0.00 -25.76 430.08 1.16 -24.60 By element: Atomic # 1 Polarization: -12.82 SS G_CDS: -0.39 Total: -13.21 kcal Atomic # 6 Polarization: 8.32 SS G_CDS: 4.98 Total: 13.30 kcal Atomic # 7 Polarization: -0.31 SS G_CDS: -3.80 Total: -4.11 kcal Atomic # 8 Polarization: -16.25 SS G_CDS: -1.77 Total: -18.02 kcal Atomic # 14 Polarization: -4.69 SS G_CDS: 2.13 Total: -2.55 kcal Total: -25.76 1.16 -24.60 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14589458_16915396.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.330 kcal (2) G-P(sol) polarization free energy of solvation -25.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.597 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds