Wall clock time and date at job start Sun Mar 7 2021 02:30:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.45192 * 109.47109 * 2 1 4 4 C 1.34230 * 117.00018 * 179.97438 * 3 2 1 5 5 O 1.20826 * 120.00015 * 0.02562 * 4 3 2 6 6 C 1.50701 * 120.00046 * 179.97438 * 4 3 2 7 7 H 1.09002 * 109.46793 * 60.00715 * 6 4 3 8 8 C 1.53002 * 109.46958 * 180.02562 * 6 4 3 9 9 C 1.52997 * 109.46978 * 179.97438 * 8 6 4 10 10 C 1.53002 * 109.47415 * 300.00098 * 9 8 6 11 11 H 1.09002 * 109.47070 * 300.00053 * 10 9 8 12 12 N 1.46505 * 109.47411 * 179.97438 * 10 9 8 13 13 C 1.34769 * 119.99798 * 155.00053 * 12 10 9 14 14 O 1.21280 * 120.00742 * 0.02562 * 13 12 10 15 15 C 1.50705 * 119.99510 * 179.97438 * 13 12 10 16 16 O 1.42904 * 109.47077 * 180.02562 * 15 13 12 17 17 C 1.35896 * 117.00192 * 180.02562 * 16 15 13 18 18 C 1.38711 * 120.05705 * 179.72611 * 17 16 15 19 19 C 1.50704 * 120.02764 * 0.02562 * 18 17 16 20 20 O 1.42893 * 109.47367 * 74.99726 * 19 18 17 21 21 Si 1.86296 * 109.46914 * 195.00001 * 19 18 17 22 22 C 1.38163 * 119.94424 * 179.67603 * 18 17 16 23 23 C 1.38248 * 120.05354 * 0.62217 * 22 18 17 24 24 C 1.38279 * 120.11400 * 359.67572 * 23 22 18 25 25 C 1.38125 * 120.05283 * 0.02562 * 24 23 22 26 26 C 1.52997 * 109.46817 * 59.99873 * 10 9 8 27 27 C 1.52992 * 109.47482 * 300.00014 * 26 10 9 28 28 H 1.09003 * 109.46881 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.46992 * 299.99805 * 1 2 3 30 30 H 1.09005 * 109.47066 * 60.00281 * 1 2 3 31 31 H 1.08998 * 109.47230 * 239.99698 * 2 1 3 32 32 H 1.09001 * 109.46829 * 120.00434 * 2 1 3 33 33 H 1.09002 * 109.47097 * 60.00192 * 8 6 4 34 34 H 1.08998 * 109.47844 * 300.00407 * 8 6 4 35 35 H 1.09000 * 109.47140 * 180.02562 * 9 8 6 36 36 H 1.09002 * 109.47497 * 60.00450 * 9 8 6 37 37 H 0.97005 * 119.99239 * 335.00029 * 12 10 9 38 38 H 1.08995 * 109.47765 * 299.99977 * 15 13 12 39 39 H 1.09000 * 109.47068 * 60.00791 * 15 13 12 40 40 H 1.09003 * 109.46945 * 314.99304 * 19 18 17 41 41 H 0.96693 * 114.00425 * 59.99927 * 20 19 18 42 42 H 1.48504 * 109.99682 * 179.97438 * 21 19 18 43 43 H 1.48500 * 110.00135 * 301.31036 * 21 19 18 44 44 H 1.07998 * 119.97714 * 180.31940 * 22 18 17 45 45 H 1.08001 * 119.93898 * 179.70056 * 23 22 18 46 46 H 1.07997 * 119.97834 * 180.02562 * 24 23 22 47 47 H 1.08001 * 120.03019 * 180.02562 * 25 24 23 48 48 H 1.09002 * 109.47153 * 60.00231 * 26 10 9 49 49 H 1.08998 * 109.47533 * 179.97438 * 26 10 9 50 50 H 1.09002 * 109.47103 * 300.00247 * 27 26 10 51 51 H 1.08996 * 109.47747 * 179.97438 * 27 26 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3447 1.5448 0.0005 5 8 4.0807 0.5866 0.0005 6 6 3.9207 2.9373 0.0000 7 1 3.5844 3.4699 0.8896 8 6 5.4486 2.8572 0.0001 9 6 6.0334 4.2710 -0.0011 10 6 5.5619 5.0170 -1.2510 11 1 5.8979 4.4841 -2.1405 12 7 6.1214 6.3710 -1.2518 13 6 6.2850 7.0317 -2.4150 14 8 5.9687 6.5058 -3.4610 15 6 6.8600 8.4248 -2.4157 16 8 6.9333 8.9091 -3.7582 17 6 7.4335 10.1601 -3.9363 18 6 7.5384 10.6910 -5.2135 19 6 7.0971 9.8812 -6.4054 20 8 5.6696 9.8578 -6.4634 21 14 7.7694 10.6515 -7.9627 22 6 8.0410 11.9656 -5.3914 23 6 8.4512 12.7068 -4.2988 24 6 8.3534 12.1775 -3.0251 25 6 7.8458 10.9061 -2.8415 26 6 4.0341 5.0970 -1.2511 27 6 3.4492 3.6833 -1.2499 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5139 0.8900 33 1 5.7846 2.3247 -0.8896 34 1 5.7846 2.3254 0.8903 35 1 7.1219 4.2140 -0.0014 36 1 5.6975 4.8040 0.8885 37 1 6.3741 6.7918 -0.4151 38 1 6.2203 9.0823 -1.8271 39 1 7.8594 8.4056 -1.9810 40 1 7.4738 8.8625 -6.3121 41 1 5.2649 10.7320 -6.5469 42 1 7.3418 9.8618 -9.1455 43 1 7.2889 12.0512 -8.0854 44 1 8.1181 12.3814 -6.3851 45 1 8.8483 13.7011 -4.4405 46 1 8.6741 12.7586 -2.1732 47 1 7.7692 10.4932 -1.8465 48 1 3.6981 5.6299 -0.3615 49 1 3.6981 5.6288 -2.1412 50 1 3.7852 3.1504 -2.1394 51 1 2.3608 3.7403 -1.2495 There are 68 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 68 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14589458_2989392.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 02:30:50 Heat of formation + Delta-G solvation = -169.067301 kcal Electronic energy + Delta-G solvation = -32489.634905 eV Core-core repulsion = 27934.763212 eV Total energy + Delta-G solvation = -4554.871694 eV No. of doubly occupied orbitals = 68 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 364.181 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.92381 -41.58585 -40.80456 -39.24017 -38.41861 -37.70206 -37.59031 -35.43307 -32.86157 -32.72243 -31.86964 -31.68067 -30.91787 -28.98438 -26.68881 -25.52372 -23.95423 -23.83964 -23.31692 -22.60928 -22.01185 -21.60331 -20.84292 -19.50749 -18.79886 -18.43471 -18.06885 -17.70929 -17.62276 -17.44748 -17.19221 -16.90856 -16.50927 -16.13016 -15.76626 -15.61030 -15.45069 -15.18855 -15.02455 -14.95889 -14.89753 -14.55965 -14.20616 -14.13648 -13.85829 -13.71955 -13.54639 -13.42717 -13.28025 -13.04107 -12.97310 -12.80953 -12.55495 -12.51142 -12.42871 -12.22400 -12.10228 -11.87374 -11.68313 -11.65310 -11.56494 -11.49034 -11.37527 -10.95050 -10.53400 -10.17489 -9.96012 -9.19801 -4.96050 0.25223 0.43910 1.06573 1.28464 1.44845 1.48415 1.53461 1.62593 1.92880 2.60270 2.71841 3.41448 3.45616 3.48499 3.57581 3.63870 3.73487 3.88474 3.91304 3.94340 3.99141 4.00423 4.02789 4.10235 4.13961 4.15171 4.26533 4.28974 4.29630 4.33875 4.38643 4.39838 4.55163 4.58809 4.69067 4.73150 4.80113 4.86079 4.90222 4.99671 5.01621 5.04991 5.07059 5.12389 5.21978 5.25025 5.30326 5.39364 5.39858 5.44728 5.55038 5.78066 6.30258 6.49301 6.52970 6.62810 7.14980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.053 3.947 3 O -0.360 6.360 4 C 0.463 3.537 5 O -0.541 6.541 6 C -0.073 4.073 7 H 0.140 0.860 8 C -0.100 4.100 9 C -0.112 4.112 10 C 0.143 3.857 11 H 0.060 0.940 12 N -0.704 5.704 13 C 0.512 3.488 14 O -0.571 6.571 15 C 0.036 3.964 16 O -0.314 6.314 17 C 0.129 3.871 18 C -0.165 4.165 19 C -0.082 4.082 20 O -0.549 6.549 21 Si 0.781 3.219 22 C -0.089 4.089 23 C -0.155 4.155 24 C -0.074 4.074 25 C -0.211 4.211 26 C -0.121 4.121 27 C -0.103 4.103 28 H 0.095 0.905 29 H 0.071 0.929 30 H 0.067 0.933 31 H 0.064 0.936 32 H 0.069 0.931 33 H 0.055 0.945 34 H 0.082 0.918 35 H 0.086 0.914 36 H 0.104 0.896 37 H 0.422 0.578 38 H 0.121 0.879 39 H 0.125 0.875 40 H 0.095 0.905 41 H 0.381 0.619 42 H -0.309 1.309 43 H -0.264 1.264 44 H 0.145 0.855 45 H 0.150 0.850 46 H 0.154 0.846 47 H 0.156 0.844 48 H 0.095 0.905 49 H 0.050 0.950 50 H 0.053 0.947 51 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.312 6.259 8.377 10.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.020 4.020 3 O -0.277 6.277 4 C 0.307 3.693 5 O -0.431 6.431 6 C -0.092 4.092 7 H 0.158 0.842 8 C -0.138 4.138 9 C -0.149 4.149 10 C 0.039 3.961 11 H 0.078 0.922 12 N -0.358 5.358 13 C 0.298 3.702 14 O -0.449 6.449 15 C -0.041 4.041 16 O -0.226 6.226 17 C 0.084 3.916 18 C -0.166 4.166 19 C -0.190 4.190 20 O -0.357 6.357 21 Si 0.685 3.315 22 C -0.106 4.106 23 C -0.173 4.173 24 C -0.092 4.092 25 C -0.230 4.230 26 C -0.159 4.159 27 C -0.142 4.142 28 H 0.114 0.886 29 H 0.090 0.910 30 H 0.086 0.914 31 H 0.082 0.918 32 H 0.088 0.912 33 H 0.074 0.926 34 H 0.100 0.900 35 H 0.105 0.895 36 H 0.122 0.878 37 H 0.261 0.739 38 H 0.139 0.861 39 H 0.142 0.858 40 H 0.113 0.887 41 H 0.230 0.770 42 H -0.237 1.237 43 H -0.190 1.190 44 H 0.163 0.837 45 H 0.168 0.832 46 H 0.172 0.828 47 H 0.173 0.827 48 H 0.114 0.886 49 H 0.069 0.931 50 H 0.072 0.928 51 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 2.116 5.149 6.799 8.788 hybrid contribution -1.160 -0.269 0.444 1.271 sum 0.956 4.881 7.243 8.786 Atomic orbital electron populations 1.21824 0.90669 1.04256 1.03745 1.23239 0.96946 0.79458 1.02381 1.86515 1.24366 1.33366 1.83468 1.24370 0.80531 0.93408 0.70979 1.90670 1.61125 1.44510 1.46768 1.21266 0.96672 0.88181 1.03097 0.84204 1.21375 0.91442 0.97472 1.03532 1.21740 1.01895 0.94143 0.97138 1.21026 0.93251 0.82094 0.99766 0.92153 1.45697 1.64632 1.16704 1.08760 1.20562 0.77972 0.87672 0.84020 1.90784 1.51067 1.69554 1.33484 1.22722 1.04668 0.92839 0.83913 1.86192 1.78838 1.29046 1.28570 1.19069 0.94215 0.83930 0.94403 1.19702 1.07086 0.96706 0.93101 1.25199 0.83774 1.04937 1.05086 1.86648 1.18934 1.34710 1.95363 0.94054 0.89771 0.75916 0.71727 1.21186 0.96638 0.92028 1.00776 1.21400 1.02176 1.01500 0.92185 1.21401 0.95264 0.94194 0.98346 1.21598 1.05914 0.97044 0.98409 1.21846 0.94590 0.96214 1.03259 1.21424 1.01952 0.95293 0.95500 0.88594 0.91023 0.91431 0.91801 0.91227 0.92606 0.89959 0.89543 0.87792 0.73924 0.86143 0.85755 0.88654 0.77027 1.23731 1.19007 0.83740 0.83248 0.82821 0.82674 0.88604 0.93092 0.92842 0.89558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.39 10.29 71.98 0.74 1.13 16 2 C 0.05 0.11 6.19 71.98 0.45 0.56 16 3 O -0.36 -1.56 10.12 -51.41 -0.52 -2.08 16 4 C 0.46 2.37 7.25 71.24 0.52 2.88 16 5 O -0.54 -6.31 15.73 21.97 0.35 -5.96 16 6 C -0.07 0.15 2.63 -11.54 -0.03 0.12 16 7 H 0.14 -1.04 8.14 -2.39 -0.02 -1.06 16 8 C -0.10 0.23 4.49 30.59 0.14 0.37 16 9 C -0.11 0.81 5.39 30.59 0.16 0.98 16 10 C 0.14 -0.29 2.45 44.99 0.11 -0.18 16 11 H 0.06 0.31 7.58 -2.39 -0.02 0.29 16 12 N -0.70 3.24 5.08 -442.53 -2.25 1.00 16 13 C 0.51 1.88 7.87 87.66 0.69 2.57 16 14 O -0.57 -9.32 16.16 16.01 0.26 -9.06 16 15 C 0.04 -0.07 5.22 71.24 0.37 0.30 16 16 O -0.31 -2.47 9.00 -73.35 -0.66 -3.13 16 17 C 0.13 0.57 6.66 22.51 0.15 0.72 16 18 C -0.16 -0.73 5.27 -19.77 -0.10 -0.84 16 19 C -0.08 -0.58 2.38 71.24 0.17 -0.41 16 20 O -0.55 -5.98 12.88 -148.98 -1.92 -7.90 16 21 Si 0.78 1.44 30.26 68.60 2.08 3.51 16 22 C -0.09 0.01 8.66 22.25 0.19 0.21 16 23 C -0.15 0.45 10.04 22.28 0.22 0.68 16 24 C -0.07 0.29 10.04 22.25 0.22 0.52 16 25 C -0.21 0.45 9.04 22.37 0.20 0.65 16 26 C -0.12 0.23 5.49 30.59 0.17 0.40 16 27 C -0.10 0.09 5.13 30.59 0.16 0.25 16 28 H 0.10 -0.53 8.14 -2.39 -0.02 -0.55 16 29 H 0.07 -0.22 8.14 -2.39 -0.02 -0.24 16 30 H 0.07 -0.15 8.14 -2.38 -0.02 -0.17 16 31 H 0.06 0.21 8.13 -2.39 -0.02 0.19 16 32 H 0.07 0.15 8.13 -2.39 -0.02 0.13 16 33 H 0.06 0.13 8.10 -2.39 -0.02 0.11 16 34 H 0.08 -0.17 8.10 -2.39 -0.02 -0.19 16 35 H 0.09 -0.68 8.14 -2.39 -0.02 -0.70 16 36 H 0.10 -1.30 8.14 -2.39 -0.02 -1.32 16 37 H 0.42 -5.52 8.60 -92.70 -0.80 -6.32 16 38 H 0.12 -0.97 7.66 -2.39 -0.02 -0.99 16 39 H 0.12 -1.08 7.66 -2.39 -0.02 -1.10 16 40 H 0.10 0.99 7.83 -2.39 -0.02 0.97 16 41 H 0.38 1.28 8.70 -74.06 -0.64 0.63 16 42 H -0.31 -3.16 7.11 99.48 0.71 -2.45 16 43 H -0.26 -0.61 6.67 99.48 0.66 0.05 16 44 H 0.15 -0.46 4.87 -2.91 -0.01 -0.47 16 45 H 0.15 -1.12 8.06 -2.91 -0.02 -1.14 16 46 H 0.15 -1.43 8.06 -2.91 -0.02 -1.46 16 47 H 0.16 -1.32 6.30 -2.91 -0.02 -1.34 16 48 H 0.10 -0.65 8.14 -2.39 -0.02 -0.67 16 49 H 0.05 0.21 8.14 -2.39 -0.02 0.19 16 50 H 0.05 0.16 8.14 -2.39 -0.02 0.14 16 51 H 0.09 -0.12 8.11 -2.39 -0.02 -0.14 16 Total: 0.00 -31.70 416.69 1.37 -30.33 By element: Atomic # 1 Polarization: -17.10 SS G_CDS: -0.50 Total: -17.60 kcal Atomic # 6 Polarization: 6.36 SS G_CDS: 4.53 Total: 10.89 kcal Atomic # 7 Polarization: 3.24 SS G_CDS: -2.25 Total: 1.00 kcal Atomic # 8 Polarization: -25.64 SS G_CDS: -2.50 Total: -28.13 kcal Atomic # 14 Polarization: 1.44 SS G_CDS: 2.08 Total: 3.51 kcal Total: -31.70 1.37 -30.33 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14589458_2989392.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -138.738 kcal (2) G-P(sol) polarization free energy of solvation -31.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -170.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.329 kcal (6) G-S(sol) free energy of system = (1) + (5) -169.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds