Wall clock time and date at job start Sun Mar 7 2021 02:31:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.45202 * 109.46831 * 2 1 4 4 C 1.34227 * 117.00097 * 180.02562 * 3 2 1 5 5 O 1.20833 * 119.99935 * 0.02562 * 4 3 2 6 6 C 1.50701 * 120.00509 * 180.02562 * 4 3 2 7 7 H 1.09006 * 109.46794 * 60.00045 * 6 4 3 8 8 C 1.52995 * 109.47178 * 180.02562 * 6 4 3 9 9 C 1.53007 * 109.46792 * 180.02562 * 8 6 4 10 10 C 1.53000 * 109.46865 * 299.99832 * 9 8 6 11 11 H 1.09006 * 109.47164 * 300.00135 * 10 9 8 12 12 N 1.46502 * 109.47036 * 180.02562 * 10 9 8 13 13 C 1.34778 * 119.99752 * 155.00112 * 12 10 9 14 14 O 1.21276 * 120.00464 * 359.97438 * 13 12 10 15 15 C 1.50699 * 119.99560 * 179.97438 * 13 12 10 16 16 O 1.42900 * 109.47102 * 179.97438 * 15 13 12 17 17 C 1.35895 * 117.00006 * 179.97438 * 16 15 13 18 18 C 1.38709 * 120.05636 * 180.02562 * 17 16 15 19 19 N 1.48006 * 120.03027 * 359.97438 * 18 17 16 20 20 O 1.21796 * 120.00501 * 179.97438 * 19 18 17 21 21 O 1.21807 * 119.99592 * 0.02562 * 19 18 17 22 22 C 1.38170 * 119.94701 * 179.70967 * 18 17 16 23 23 C 1.38239 * 120.05299 * 0.54205 * 22 18 17 24 24 C 1.50694 * 119.94726 * 179.72660 * 23 22 18 25 25 O 1.42901 * 109.47118 * 64.72722 * 24 23 22 26 26 Si 1.86298 * 109.47775 * 184.72966 * 24 23 22 27 27 C 1.38290 * 120.11115 * 359.46012 * 23 22 18 28 28 C 1.38121 * 120.05580 * 0.26504 * 27 23 22 29 29 C 1.52999 * 109.47264 * 60.00098 * 10 9 8 30 30 C 1.52998 * 109.47071 * 299.99928 * 29 10 9 31 31 H 1.09002 * 109.46696 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.46988 * 299.99580 * 1 2 3 33 33 H 1.08999 * 109.47398 * 59.99776 * 1 2 3 34 34 H 1.09000 * 109.46988 * 240.00420 * 2 1 3 35 35 H 1.08999 * 109.47398 * 120.00224 * 2 1 3 36 36 H 1.08992 * 109.47335 * 60.00366 * 8 6 4 37 37 H 1.09001 * 109.47168 * 299.99519 * 8 6 4 38 38 H 1.09002 * 109.46479 * 180.02562 * 9 8 6 39 39 H 1.08992 * 109.47235 * 59.99873 * 9 8 6 40 40 H 0.96998 * 119.99889 * 334.99607 * 12 10 9 41 41 H 1.09000 * 109.47572 * 59.99887 * 15 13 12 42 42 H 1.09001 * 109.47448 * 299.99693 * 15 13 12 43 43 H 1.08007 * 119.97412 * 180.29535 * 22 18 17 44 44 H 1.09004 * 109.47407 * 304.73078 * 24 23 22 45 45 H 0.96708 * 114.00246 * 180.02562 * 25 24 23 46 46 H 1.48506 * 109.99834 * 300.00486 * 26 24 23 47 47 H 1.48502 * 110.00011 * 61.31751 * 26 24 23 48 48 H 1.08002 * 119.97440 * 180.29726 * 27 23 22 49 49 H 1.07996 * 120.02606 * 179.97438 * 28 27 23 50 50 H 1.08998 * 109.46720 * 60.00112 * 29 10 9 51 51 H 1.09000 * 109.46961 * 179.97438 * 29 10 9 52 52 H 1.08998 * 109.47498 * 299.99707 * 30 29 10 53 53 H 1.09000 * 109.47182 * 179.97438 * 30 29 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5450 -0.0005 5 8 4.0808 0.5867 -0.0015 6 6 3.9207 2.9375 0.0000 7 1 3.5852 3.4691 0.8905 8 6 5.4486 2.8575 -0.0014 9 6 6.0333 4.2714 -0.0002 10 6 5.5606 5.0197 -1.2482 11 1 5.8959 4.4886 -2.1391 12 7 6.1210 6.3734 -1.2474 13 6 6.2835 7.0361 -2.4097 14 8 5.9663 6.5118 -3.4562 15 6 6.8594 8.4287 -2.4087 16 8 6.9323 8.9149 -3.7505 17 6 7.4322 10.1662 -3.9270 18 6 7.5310 10.7012 -5.2029 19 7 7.0925 9.9096 -6.3741 20 8 7.1790 10.3801 -7.4942 21 8 6.6442 8.7879 -6.2176 22 6 8.0341 11.9760 -5.3792 23 6 8.4492 12.7137 -4.2863 24 6 9.0032 14.1014 -4.4820 25 8 7.9797 14.9544 -4.9987 26 14 9.6007 14.7678 -2.8481 27 6 8.3518 12.1825 -3.0132 28 6 7.8444 10.9109 -2.8312 29 6 4.0328 5.0998 -1.2468 30 6 3.4480 3.6859 -1.2480 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 -0.3634 0.5139 -0.8899 34 1 1.8934 -0.5138 -0.8900 35 1 1.8934 -0.5139 0.8899 36 1 5.7837 2.3261 -0.8921 37 1 5.7853 2.3247 0.8879 38 1 7.1218 4.2143 -0.0017 39 1 5.6981 4.8024 0.8906 40 1 6.3750 6.7926 -0.4104 41 1 7.8593 8.4082 -1.9753 42 1 6.2208 9.0856 -1.8181 43 1 8.1068 12.3948 -6.3721 44 1 9.8350 14.0648 -5.1854 45 1 8.2663 15.8656 -5.1500 46 1 8.4758 14.8228 -1.8800 47 1 10.6874 13.9072 -2.3154 48 1 8.6723 12.7627 -2.1605 49 1 7.7689 10.4964 -1.8368 50 1 3.6976 5.6309 -0.3559 51 1 3.6961 5.6333 -2.1357 52 1 3.7832 3.1548 -2.1388 53 1 2.3595 3.7429 -1.2465 There are 76 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 76 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14589458_4549638.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 02:31:37 Heat of formation + Delta-G solvation = -164.738152 kcal Electronic energy + Delta-G solvation = -38620.220677 eV Core-core repulsion = 33234.520274 eV Total energy + Delta-G solvation = -5385.700403 eV No. of doubly occupied orbitals = 76 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 409.175 amu Computer time = 1.41 seconds Orbital eigenvalues (eV) -43.37576 -41.97158 -41.79259 -40.94470 -39.66942 -38.89883 -37.71097 -37.64612 -37.38489 -35.45390 -33.64692 -32.82075 -32.46144 -31.86509 -31.51943 -29.40762 -27.90703 -26.61126 -25.51815 -24.26091 -23.87474 -23.62603 -22.80730 -22.06935 -21.66515 -20.89451 -20.51293 -19.85926 -19.26265 -18.81813 -18.73854 -18.57699 -18.35365 -17.73739 -17.67007 -17.60059 -17.50241 -17.08361 -16.52298 -16.04970 -15.98529 -15.68798 -15.40622 -15.28722 -15.11831 -14.95090 -14.59998 -14.50590 -14.31907 -14.14480 -13.98467 -13.83574 -13.80343 -13.50523 -13.29464 -13.04913 -12.97515 -12.80273 -12.76399 -12.71175 -12.55024 -12.45470 -12.39361 -12.32635 -12.21832 -12.18771 -11.98323 -11.65390 -11.56627 -11.49255 -11.38295 -11.00522 -10.97998 -10.39888 -10.18505 -9.87730 -4.89247 -1.41023 -0.36297 0.04880 0.25273 1.06371 1.12771 1.27590 1.41962 1.61076 1.68814 1.89764 1.91557 2.25501 2.97601 3.08009 3.25322 3.40780 3.47430 3.50290 3.53147 3.57830 3.64296 3.82364 3.88138 3.91962 3.92919 3.94466 4.00656 4.05961 4.12744 4.14620 4.23656 4.26544 4.29014 4.29835 4.39721 4.40251 4.49444 4.58613 4.69573 4.73468 4.80154 4.86030 4.90436 4.95333 5.01789 5.05594 5.07363 5.10768 5.12533 5.22109 5.24521 5.39285 5.44003 5.64567 6.37338 6.43179 6.62667 6.86270 7.13631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.053 3.947 3 O -0.360 6.360 4 C 0.462 3.538 5 O -0.542 6.542 6 C -0.073 4.073 7 H 0.141 0.859 8 C -0.101 4.101 9 C -0.111 4.111 10 C 0.143 3.857 11 H 0.060 0.940 12 N -0.702 5.702 13 C 0.509 3.491 14 O -0.563 6.563 15 C 0.022 3.978 16 O -0.288 6.288 17 C 0.195 3.805 18 C -0.102 4.102 19 N 0.034 4.966 20 O -0.191 6.191 21 O -0.173 6.173 22 C 0.002 3.998 23 C -0.118 4.118 24 C -0.088 4.088 25 O -0.567 6.567 26 Si 0.778 3.222 27 C -0.026 4.026 28 C -0.189 4.189 29 C -0.121 4.121 30 C -0.104 4.104 31 H 0.095 0.905 32 H 0.071 0.929 33 H 0.067 0.933 34 H 0.063 0.937 35 H 0.069 0.931 36 H 0.054 0.946 37 H 0.081 0.919 38 H 0.086 0.914 39 H 0.105 0.895 40 H 0.424 0.576 41 H 0.142 0.858 42 H 0.142 0.858 43 H 0.162 0.838 44 H 0.097 0.903 45 H 0.407 0.593 46 H -0.278 1.278 47 H -0.273 1.273 48 H 0.163 0.837 49 H 0.203 0.797 50 H 0.097 0.903 51 H 0.052 0.948 52 H 0.052 0.948 53 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.487 9.595 13.183 16.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.020 4.020 3 O -0.277 6.277 4 C 0.307 3.693 5 O -0.431 6.431 6 C -0.092 4.092 7 H 0.159 0.841 8 C -0.139 4.139 9 C -0.148 4.148 10 C 0.038 3.962 11 H 0.078 0.922 12 N -0.356 5.356 13 C 0.295 3.705 14 O -0.440 6.440 15 C -0.055 4.055 16 O -0.197 6.197 17 C 0.145 3.855 18 C -0.187 4.187 19 N 0.546 4.454 20 O -0.401 6.401 21 O -0.386 6.386 22 C -0.017 4.017 23 C -0.119 4.119 24 C -0.196 4.196 25 O -0.378 6.378 26 Si 0.680 3.320 27 C -0.044 4.044 28 C -0.208 4.208 29 C -0.159 4.159 30 C -0.143 4.143 31 H 0.114 0.886 32 H 0.090 0.910 33 H 0.086 0.914 34 H 0.082 0.918 35 H 0.088 0.912 36 H 0.073 0.927 37 H 0.100 0.900 38 H 0.104 0.896 39 H 0.123 0.877 40 H 0.262 0.738 41 H 0.160 0.840 42 H 0.159 0.841 43 H 0.179 0.821 44 H 0.115 0.885 45 H 0.259 0.741 46 H -0.205 1.205 47 H -0.199 1.199 48 H 0.180 0.820 49 H 0.220 0.780 50 H 0.115 0.885 51 H 0.071 0.929 52 H 0.071 0.929 53 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 3.329 8.410 13.692 16.410 hybrid contribution -0.315 -1.246 -1.070 1.673 sum 3.014 7.164 12.622 14.823 Atomic orbital electron populations 1.21823 0.90662 1.04251 1.03756 1.23239 0.96950 0.79461 1.02360 1.86515 1.24374 1.33352 1.83462 1.24397 0.80528 0.93453 0.70965 1.90672 1.61134 1.44548 1.46793 1.21265 0.96641 0.88121 1.03150 0.84147 1.21379 0.91472 0.97571 1.03472 1.21736 1.01856 0.94052 0.97201 1.21028 0.93282 0.82064 0.99777 0.92183 1.45648 1.64625 1.16669 1.08681 1.20413 0.78407 0.87508 0.84222 1.90854 1.50509 1.69345 1.33292 1.23152 1.06317 0.93877 0.82122 1.86476 1.76129 1.26335 1.30809 1.18858 0.90029 0.85021 0.91607 1.20875 1.18351 0.96141 0.83316 1.43793 0.98002 1.01077 1.02528 1.94494 1.60350 1.74126 1.11101 1.94688 1.46683 1.04698 1.92542 1.20904 0.89981 0.88206 1.02641 1.19675 1.03189 0.97059 0.91962 1.25018 0.93679 0.88053 1.12863 1.86449 1.37714 1.26037 1.87607 0.93438 0.77942 0.88641 0.71931 1.21523 0.91425 0.94615 0.96834 1.21687 1.04656 0.95349 0.99062 1.21848 0.94521 0.96146 1.03391 1.21431 1.01965 0.95383 0.95479 0.88614 0.90996 0.91434 0.91837 0.91231 0.92694 0.90019 0.89563 0.87672 0.73763 0.84048 0.84055 0.82097 0.88527 0.74093 1.20492 1.19927 0.82016 0.77971 0.88451 0.92946 0.92913 0.89576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.39 10.29 71.98 0.74 1.13 16 2 C 0.05 0.11 6.19 71.98 0.45 0.56 16 3 O -0.36 -1.51 10.12 -51.39 -0.52 -2.03 16 4 C 0.46 2.28 7.26 71.24 0.52 2.80 16 5 O -0.54 -6.28 15.73 21.94 0.35 -5.94 16 6 C -0.07 0.18 2.63 -11.54 -0.03 0.15 16 7 H 0.14 -1.13 8.14 -2.38 -0.02 -1.15 16 8 C -0.10 0.28 4.49 30.60 0.14 0.42 16 9 C -0.11 0.92 5.39 30.60 0.16 1.09 16 10 C 0.14 -0.47 2.45 44.99 0.11 -0.36 16 11 H 0.06 0.26 7.58 -2.38 -0.02 0.24 16 12 N -0.70 4.80 5.08 -442.53 -2.25 2.55 16 13 C 0.51 0.70 7.87 87.66 0.69 1.39 16 14 O -0.56 -8.57 16.16 16.02 0.26 -8.31 16 15 C 0.02 -0.13 5.22 71.24 0.37 0.24 16 16 O -0.29 -1.83 7.68 -63.34 -0.49 -2.31 16 17 C 0.19 0.71 6.67 22.51 0.15 0.86 16 18 C -0.10 -0.95 6.87 36.47 0.25 -0.70 16 19 N 0.03 0.61 4.45 -46.24 -0.21 0.40 16 20 O -0.19 -3.60 18.45 18.89 0.35 -3.25 16 21 O -0.17 -3.91 17.24 25.60 0.44 -3.47 16 22 C 0.00 0.01 9.18 22.25 0.20 0.21 16 23 C -0.12 0.11 5.39 -19.85 -0.11 0.00 16 24 C -0.09 0.54 2.79 71.23 0.20 0.74 16 25 O -0.57 2.47 12.81 -148.98 -1.91 0.56 16 26 Si 0.78 -7.76 29.85 68.60 2.05 -5.71 16 27 C -0.03 0.12 8.66 22.25 0.19 0.32 16 28 C -0.19 1.09 9.04 22.37 0.20 1.29 16 29 C -0.12 0.36 5.50 30.59 0.17 0.53 16 30 C -0.10 0.14 5.14 30.59 0.16 0.30 16 31 H 0.10 -0.52 8.14 -2.39 -0.02 -0.54 16 32 H 0.07 -0.23 8.14 -2.39 -0.02 -0.25 16 33 H 0.07 -0.15 8.14 -2.39 -0.02 -0.17 16 34 H 0.06 0.21 8.13 -2.39 -0.02 0.19 16 35 H 0.07 0.14 8.13 -2.39 -0.02 0.12 16 36 H 0.05 0.11 8.10 -2.39 -0.02 0.10 16 37 H 0.08 -0.20 8.10 -2.39 -0.02 -0.22 16 38 H 0.09 -0.77 8.14 -2.39 -0.02 -0.79 16 39 H 0.10 -1.45 8.14 -2.39 -0.02 -1.47 16 40 H 0.42 -6.76 8.60 -92.71 -0.80 -7.56 16 41 H 0.14 -2.02 7.66 -2.39 -0.02 -2.03 16 42 H 0.14 -2.00 7.66 -2.39 -0.02 -2.02 16 43 H 0.16 0.69 7.61 -2.91 -0.02 0.67 16 44 H 0.10 -0.90 7.96 -2.38 -0.02 -0.92 16 45 H 0.41 -5.93 8.74 -74.05 -0.65 -6.58 16 46 H -0.28 1.32 7.05 99.48 0.70 2.02 16 47 H -0.27 1.67 7.11 99.48 0.71 2.38 16 48 H 0.16 -1.47 4.86 -2.91 -0.01 -1.48 16 49 H 0.20 -3.23 6.30 -2.91 -0.02 -3.24 16 50 H 0.10 -0.79 8.14 -2.39 -0.02 -0.81 16 51 H 0.05 0.15 8.14 -2.39 -0.02 0.13 16 52 H 0.05 0.15 8.14 -2.39 -0.02 0.13 16 53 H 0.09 -0.15 8.11 -2.39 -0.02 -0.17 16 Total: 0.00 -42.17 443.58 2.20 -39.97 By element: Atomic # 1 Polarization: -23.01 SS G_CDS: -0.44 Total: -23.45 kcal Atomic # 6 Polarization: 6.41 SS G_CDS: 4.56 Total: 10.98 kcal Atomic # 7 Polarization: 5.41 SS G_CDS: -2.45 Total: 2.95 kcal Atomic # 8 Polarization: -23.22 SS G_CDS: -1.52 Total: -24.74 kcal Atomic # 14 Polarization: -7.76 SS G_CDS: 2.05 Total: -5.71 kcal Total: -42.17 2.20 -39.97 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14589458_4549638.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -124.767 kcal (2) G-P(sol) polarization free energy of solvation -42.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -166.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.971 kcal (6) G-S(sol) free energy of system = (1) + (5) -164.738 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.41 seconds