Wall clock time and date at job start Sun Mar 7 2021 02:31:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.45203 * 109.47096 * 2 1 4 4 C 1.34229 * 116.99579 * 179.97438 * 3 2 1 5 5 O 1.20819 * 120.00672 * 359.97438 * 4 3 2 6 6 C 1.50703 * 119.99682 * 179.97438 * 4 3 2 7 7 H 1.09002 * 109.47152 * 59.99843 * 6 4 3 8 8 C 1.53005 * 109.47304 * 179.97438 * 6 4 3 9 9 C 1.52997 * 109.47452 * 180.02562 * 8 6 4 10 10 C 1.53002 * 109.46817 * 300.00239 * 9 8 6 11 11 H 1.08992 * 109.47063 * 299.99823 * 10 9 8 12 12 N 1.46499 * 109.46799 * 179.97438 * 10 9 8 13 13 C 1.34778 * 119.99771 * 85.00174 * 12 10 9 14 14 O 1.21279 * 120.00041 * 359.97438 * 13 12 10 15 15 C 1.50703 * 119.99935 * 179.97438 * 13 12 10 16 16 O 1.42895 * 109.47270 * 179.97438 * 15 13 12 17 17 C 1.35899 * 117.00454 * 180.02562 * 16 15 13 18 18 C 1.38713 * 120.05967 * 179.72764 * 17 16 15 19 19 C 1.38165 * 119.94384 * 179.72457 * 18 17 16 20 20 C 1.50698 * 119.97435 * 180.27668 * 19 18 17 21 21 O 1.42901 * 109.46854 * 300.29324 * 20 19 18 22 22 Si 1.86299 * 109.47183 * 180.29592 * 20 19 18 23 23 C 1.38253 * 120.05386 * 0.56938 * 19 18 17 24 24 C 1.38282 * 120.11264 * 359.68315 * 23 19 18 25 25 C 1.38127 * 120.05600 * 0.04617 * 24 23 19 26 26 C 1.53000 * 109.47233 * 60.00194 * 10 9 8 27 27 C 1.52997 * 109.47060 * 299.99657 * 26 10 9 28 28 H 1.08993 * 109.47027 * 300.00255 * 1 2 3 29 29 H 1.09000 * 109.46905 * 59.99996 * 1 2 3 30 30 H 1.08998 * 109.47049 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.47476 * 240.00007 * 2 1 3 32 32 H 1.09000 * 109.46905 * 120.00003 * 2 1 3 33 33 H 1.09002 * 109.46935 * 59.99966 * 8 6 4 34 34 H 1.09001 * 109.46812 * 300.00308 * 8 6 4 35 35 H 1.08993 * 109.47194 * 179.97438 * 9 8 6 36 36 H 1.09002 * 109.46695 * 59.99734 * 9 8 6 37 37 H 0.97006 * 120.00568 * 264.99947 * 12 10 9 38 38 H 1.08995 * 109.47091 * 300.00103 * 15 13 12 39 39 H 1.08999 * 109.47030 * 59.99811 * 15 13 12 40 40 H 1.07996 * 120.02724 * 359.97438 * 18 17 16 41 41 H 1.08997 * 109.47478 * 60.29063 * 20 19 18 42 42 H 0.96698 * 114.00712 * 300.00156 * 21 20 19 43 43 H 1.48501 * 110.00010 * 58.67970 * 22 20 19 44 44 H 1.48510 * 109.99787 * 179.97438 * 22 20 19 45 45 H 1.08004 * 119.94105 * 179.70052 * 23 19 18 46 46 H 1.07992 * 119.97342 * 180.02562 * 24 23 19 47 47 H 1.07997 * 120.02469 * 180.02562 * 25 24 23 48 48 H 1.09002 * 109.47398 * 59.99826 * 26 10 9 49 49 H 1.09001 * 109.47194 * 180.02562 * 26 10 9 50 50 H 1.08996 * 109.47853 * 180.02562 * 27 26 10 51 51 H 1.09002 * 109.47153 * 300.00319 * 27 26 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3448 1.5448 0.0005 5 8 4.0808 0.5866 0.0015 6 6 3.9208 2.9374 0.0000 7 1 3.5844 3.4701 0.8895 8 6 5.4487 2.8573 0.0014 9 6 6.0336 4.2711 0.0015 10 6 5.5631 5.0176 -1.2484 11 1 5.8998 4.4852 -2.1379 12 7 6.1226 6.3716 -1.2480 13 6 7.3582 6.5902 -1.7400 14 8 8.0070 5.6661 -2.1826 15 6 7.9335 7.9831 -1.7402 16 8 9.2448 7.9568 -2.3075 17 6 9.9087 9.1402 -2.3821 18 6 11.1880 9.1867 -2.9164 19 6 11.8585 10.3921 -2.9964 20 6 13.2459 10.4444 -3.5825 21 8 14.1174 9.6082 -2.8188 22 14 13.8726 12.1983 -3.5392 23 6 11.2602 11.5493 -2.5336 24 6 9.9871 11.5048 -1.9957 25 6 9.3103 10.3031 -1.9186 26 6 4.0352 5.0978 -1.2498 27 6 3.4504 3.6840 -1.2499 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 5.7855 2.3245 -0.8879 34 1 5.7838 2.3258 0.8921 35 1 7.1220 4.2140 0.0030 36 1 5.6968 4.8035 0.8910 37 1 5.6039 7.1107 -0.8937 38 1 7.2949 8.6399 -2.3307 39 1 7.9883 8.3537 -0.7166 40 1 11.6578 8.2822 -3.2734 41 1 13.2180 10.0939 -4.6142 42 1 14.1909 9.8619 -1.8886 43 1 13.8854 12.6986 -2.1411 44 1 15.2404 12.2632 -4.1140 45 1 11.7880 12.4898 -2.5926 46 1 9.5217 12.4101 -1.6352 47 1 8.3158 10.2690 -1.4988 48 1 3.6985 5.6302 -0.3602 49 1 3.7000 5.6292 -2.1405 50 1 2.3619 3.7410 -1.2513 51 1 3.7871 3.1516 -2.1394 There are 68 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 68 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14589458_4860298.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 02:31:54 Heat of formation + Delta-G solvation = -172.053826 kcal Electronic energy + Delta-G solvation = -31774.832007 eV Core-core repulsion = 27219.830808 eV Total energy + Delta-G solvation = -4555.001199 eV No. of doubly occupied orbitals = 68 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 364.181 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.91837 -41.54707 -40.78954 -39.37710 -38.75222 -37.70660 -37.33792 -35.43394 -32.81618 -32.48215 -31.94761 -31.85494 -31.04439 -28.91498 -26.83487 -25.43028 -24.03657 -23.66579 -23.60472 -22.61541 -21.91518 -21.54937 -20.86167 -19.34790 -18.76889 -18.58704 -17.93299 -17.68300 -17.54030 -17.43226 -17.30544 -17.02468 -16.69675 -16.24956 -15.92884 -15.59072 -15.37505 -15.22999 -15.00650 -14.95754 -14.71402 -14.56961 -14.15183 -14.10903 -13.96645 -13.81139 -13.57720 -13.41370 -13.25774 -13.00251 -12.94677 -12.81538 -12.60382 -12.54190 -12.40628 -12.20783 -12.10144 -12.02554 -11.67303 -11.61241 -11.56363 -11.41316 -11.39228 -10.96482 -10.69078 -10.17856 -9.92099 -9.27999 -4.90971 0.21211 0.39900 1.07915 1.27793 1.43817 1.48700 1.61787 1.62408 1.97199 2.58750 2.67497 3.37665 3.40271 3.54932 3.59116 3.62425 3.66545 3.84928 3.89399 3.95327 4.01183 4.02510 4.04113 4.11448 4.14141 4.16505 4.25757 4.28546 4.29151 4.31435 4.38187 4.40257 4.54898 4.59996 4.65008 4.74708 4.82331 4.88760 4.91619 4.99102 5.01369 5.07801 5.09413 5.14520 5.23061 5.25131 5.25534 5.37800 5.40644 5.45092 5.45816 5.70551 6.28884 6.45669 6.49171 6.64050 7.14851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.053 3.947 3 O -0.356 6.356 4 C 0.462 3.538 5 O -0.546 6.546 6 C -0.073 4.073 7 H 0.141 0.859 8 C -0.099 4.099 9 C -0.121 4.121 10 C 0.143 3.857 11 H 0.060 0.940 12 N -0.702 5.702 13 C 0.511 3.489 14 O -0.575 6.575 15 C 0.038 3.962 16 O -0.325 6.325 17 C 0.113 3.887 18 C -0.151 4.151 19 C -0.082 4.082 20 C -0.096 4.096 21 O -0.552 6.552 22 Si 0.787 3.213 23 C -0.157 4.157 24 C -0.070 4.070 25 C -0.201 4.201 26 C -0.112 4.112 27 C -0.105 4.105 28 H 0.071 0.929 29 H 0.070 0.930 30 H 0.094 0.906 31 H 0.064 0.936 32 H 0.065 0.935 33 H 0.051 0.949 34 H 0.067 0.933 35 H 0.048 0.952 36 H 0.095 0.905 37 H 0.424 0.576 38 H 0.128 0.872 39 H 0.126 0.874 40 H 0.109 0.891 41 H 0.119 0.881 42 H 0.386 0.614 43 H -0.276 1.276 44 H -0.306 1.306 45 H 0.150 0.850 46 H 0.164 0.836 47 H 0.163 0.837 48 H 0.105 0.895 49 H 0.090 0.910 50 H 0.100 0.900 51 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.569 9.847 3.080 14.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.021 4.021 3 O -0.272 6.272 4 C 0.307 3.693 5 O -0.436 6.436 6 C -0.092 4.092 7 H 0.158 0.842 8 C -0.138 4.138 9 C -0.159 4.159 10 C 0.038 3.962 11 H 0.079 0.921 12 N -0.356 5.356 13 C 0.297 3.703 14 O -0.454 6.454 15 C -0.040 4.040 16 O -0.239 6.239 17 C 0.068 3.932 18 C -0.170 4.170 19 C -0.083 4.083 20 C -0.203 4.203 21 O -0.360 6.360 22 Si 0.691 3.309 23 C -0.175 4.175 24 C -0.088 4.088 25 C -0.219 4.219 26 C -0.149 4.149 27 C -0.143 4.143 28 H 0.090 0.910 29 H 0.089 0.911 30 H 0.112 0.888 31 H 0.082 0.918 32 H 0.084 0.916 33 H 0.069 0.931 34 H 0.086 0.914 35 H 0.066 0.934 36 H 0.114 0.886 37 H 0.262 0.738 38 H 0.146 0.854 39 H 0.143 0.857 40 H 0.127 0.873 41 H 0.136 0.864 42 H 0.235 0.765 43 H -0.202 1.202 44 H -0.234 1.234 45 H 0.167 0.833 46 H 0.182 0.818 47 H 0.180 0.820 48 H 0.123 0.877 49 H 0.109 0.891 50 H 0.119 0.881 51 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -9.221 8.914 2.428 13.053 hybrid contribution 0.605 -1.524 0.965 1.903 sum -8.616 7.389 3.393 11.847 Atomic orbital electron populations 1.21815 0.90428 1.04224 1.03909 1.23240 0.97070 0.79515 1.02241 1.86506 1.24050 1.33233 1.83457 1.24400 0.80593 0.93401 0.70922 1.90680 1.61300 1.44723 1.46877 1.21253 0.95462 0.88388 1.04075 0.84155 1.21332 0.92537 0.97208 1.02697 1.21850 1.00055 0.94819 0.99189 1.21039 0.94780 0.82272 0.98107 0.92144 1.45688 1.15724 1.11380 1.62825 1.20610 0.82147 0.90426 0.77110 1.90778 1.60762 1.46530 1.47304 1.22751 0.83435 0.95050 1.02743 1.86127 1.29637 1.29778 1.78326 1.19202 0.92141 0.84949 0.96877 1.20286 0.93302 0.98746 1.04702 1.20130 0.96377 0.92931 0.98816 1.25493 0.87765 1.09015 0.98065 1.86579 1.66649 1.56257 1.26521 0.93899 0.80357 0.74703 0.81971 1.21221 0.97138 0.97497 1.01608 1.21343 0.93514 0.98354 0.95545 1.21646 1.02878 0.91722 1.05687 1.21753 0.90906 0.96703 1.05566 1.21485 1.02619 0.95290 0.94879 0.91008 0.91056 0.88778 0.91791 0.91638 0.93062 0.91436 0.93364 0.88636 0.73753 0.85432 0.85677 0.87253 0.86363 0.76472 1.20207 1.23424 0.83331 0.81849 0.82003 0.87655 0.89098 0.88143 0.92409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.61 10.29 71.98 0.74 1.35 16 2 C 0.05 0.06 6.19 71.98 0.45 0.51 16 3 O -0.36 -0.95 10.12 -51.41 -0.52 -1.47 16 4 C 0.46 2.14 7.26 71.24 0.52 2.66 16 5 O -0.55 -6.86 15.73 21.98 0.35 -6.52 16 6 C -0.07 0.20 2.63 -11.54 -0.03 0.17 16 7 H 0.14 -1.15 8.14 -2.39 -0.02 -1.17 16 8 C -0.10 -0.12 4.49 30.60 0.14 0.01 16 9 C -0.12 0.19 5.49 30.59 0.17 0.35 16 10 C 0.14 -0.45 2.45 44.99 0.11 -0.34 16 11 H 0.06 0.25 7.58 -2.39 -0.02 0.23 16 12 N -0.70 4.18 5.08 -442.54 -2.25 1.94 16 13 C 0.51 1.26 7.87 87.66 0.69 1.95 16 14 O -0.58 -8.87 16.16 16.01 0.26 -8.61 16 15 C 0.04 -0.13 5.22 71.24 0.37 0.24 16 16 O -0.33 -2.31 9.67 -73.38 -0.71 -3.02 16 17 C 0.11 0.48 6.69 22.51 0.15 0.63 16 18 C -0.15 -1.04 9.55 22.37 0.21 -0.83 16 19 C -0.08 -0.19 5.39 -19.88 -0.11 -0.30 16 20 C -0.10 -0.18 2.82 71.24 0.20 0.02 16 21 O -0.55 -3.30 12.76 -148.98 -1.90 -5.20 16 22 Si 0.79 -1.46 29.79 68.60 2.04 0.58 16 23 C -0.16 0.38 8.67 22.28 0.19 0.57 16 24 C -0.07 0.34 10.04 22.25 0.22 0.56 16 25 C -0.20 0.65 9.04 22.37 0.20 0.85 16 26 C -0.11 1.09 5.39 30.59 0.16 1.25 16 27 C -0.10 0.63 5.14 30.59 0.16 0.78 16 28 H 0.07 -0.33 8.14 -2.39 -0.02 -0.35 16 29 H 0.07 -0.32 8.14 -2.39 -0.02 -0.34 16 30 H 0.09 -0.62 8.14 -2.39 -0.02 -0.64 16 31 H 0.06 0.15 8.13 -2.39 -0.02 0.13 16 32 H 0.07 0.13 8.13 -2.39 -0.02 0.11 16 33 H 0.05 0.32 8.10 -2.39 -0.02 0.30 16 34 H 0.07 0.22 8.10 -2.39 -0.02 0.20 16 35 H 0.05 0.23 8.14 -2.39 -0.02 0.21 16 36 H 0.10 -0.63 8.14 -2.39 -0.02 -0.65 16 37 H 0.42 -6.26 8.60 -92.70 -0.80 -7.06 16 38 H 0.13 -1.33 7.66 -2.39 -0.02 -1.35 16 39 H 0.13 -1.26 7.66 -2.39 -0.02 -1.28 16 40 H 0.11 1.18 8.06 -2.91 -0.02 1.16 16 41 H 0.12 0.17 7.96 -2.39 -0.02 0.15 16 42 H 0.39 -0.07 8.70 -74.06 -0.64 -0.72 16 43 H -0.28 -0.22 7.11 99.48 0.71 0.49 16 44 H -0.31 -1.91 7.11 99.48 0.71 -1.20 16 45 H 0.15 -1.03 4.87 -2.91 -0.01 -1.04 16 46 H 0.16 -1.84 8.06 -2.91 -0.02 -1.87 16 47 H 0.16 -1.71 6.30 -2.91 -0.02 -1.73 16 48 H 0.11 -1.55 8.14 -2.39 -0.02 -1.57 16 49 H 0.09 -1.00 8.14 -2.39 -0.02 -1.02 16 50 H 0.10 -0.82 8.11 -2.39 -0.02 -0.84 16 51 H 0.06 -0.14 8.14 -2.39 -0.02 -0.16 16 Total: 0.00 -33.23 417.45 1.37 -31.86 By element: Atomic # 1 Polarization: -19.55 SS G_CDS: -0.45 Total: -20.00 kcal Atomic # 6 Polarization: 5.89 SS G_CDS: 4.55 Total: 10.44 kcal Atomic # 7 Polarization: 4.18 SS G_CDS: -2.25 Total: 1.94 kcal Atomic # 8 Polarization: -22.29 SS G_CDS: -2.53 Total: -24.82 kcal Atomic # 14 Polarization: -1.46 SS G_CDS: 2.04 Total: 0.58 kcal Total: -33.23 1.37 -31.86 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14589458_4860298.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -140.192 kcal (2) G-P(sol) polarization free energy of solvation -33.229 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -173.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.367 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.862 kcal (6) G-S(sol) free energy of system = (1) + (5) -172.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds