Wall clock time and date at job start Sun Mar 7 2021 02:31:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.45193 * 109.47428 * 2 1 4 4 C 1.34222 * 117.00495 * 179.97438 * 3 2 1 5 5 O 1.20826 * 119.99719 * 0.02562 * 4 3 2 6 6 C 1.50702 * 120.00388 * 179.97438 * 4 3 2 7 7 H 1.08993 * 109.46847 * 60.00256 * 6 4 3 8 8 C 1.52999 * 109.47228 * 179.97438 * 6 4 3 9 9 C 1.52999 * 109.47031 * 179.97438 * 8 6 4 10 10 C 1.52996 * 109.47703 * 300.00331 * 9 8 6 11 11 H 1.08999 * 109.47237 * 300.00281 * 10 9 8 12 12 N 1.46493 * 109.47222 * 179.97438 * 10 9 8 13 13 C 1.34784 * 119.99864 * 155.00033 * 12 10 9 14 14 O 1.21283 * 119.99649 * 359.72839 * 13 12 10 15 15 C 1.50694 * 119.99988 * 179.72721 * 13 12 10 16 16 O 1.42905 * 109.47179 * 179.97438 * 15 13 12 17 17 C 1.35978 * 116.99861 * 179.97438 * 16 15 13 18 18 C 1.38684 * 119.99449 * 180.02562 * 17 16 15 19 19 C 1.50694 * 120.00345 * 359.97438 * 18 17 16 20 20 O 1.42905 * 109.47149 * 75.00167 * 19 18 17 21 21 Si 1.86302 * 109.47196 * 195.00524 * 19 18 17 22 22 C 1.38156 * 119.99809 * 180.02562 * 18 17 16 23 23 C 1.38678 * 119.99687 * 359.97438 * 22 18 17 24 24 O 1.35985 * 119.99711 * 180.02562 * 23 22 18 25 25 C 1.42903 * 116.99789 * 180.02562 * 24 23 22 26 26 C 1.38713 * 120.00362 * 0.02562 * 23 22 18 27 27 C 1.38115 * 120.00035 * 359.72511 * 26 23 22 28 28 C 1.53000 * 109.46775 * 59.99747 * 10 9 8 29 29 C 1.52997 * 109.46936 * 300.00032 * 6 4 3 30 30 H 1.09001 * 109.47024 * 299.99892 * 1 2 3 31 31 H 1.08995 * 109.47437 * 60.00210 * 1 2 3 32 32 H 1.09002 * 109.47381 * 179.97438 * 1 2 3 33 33 H 1.09001 * 109.47024 * 240.00107 * 2 1 3 34 34 H 1.09002 * 109.47021 * 120.00294 * 2 1 3 35 35 H 1.09010 * 109.46991 * 60.00477 * 8 6 4 36 36 H 1.08994 * 109.47214 * 300.00495 * 8 6 4 37 37 H 1.09003 * 109.46971 * 179.97438 * 9 8 6 38 38 H 1.08999 * 109.47003 * 60.00755 * 9 8 6 39 39 H 0.97000 * 120.00740 * 334.72725 * 12 10 9 40 40 H 1.08998 * 109.47224 * 299.99701 * 15 13 12 41 41 H 1.09002 * 109.47054 * 60.00213 * 15 13 12 42 42 H 1.09005 * 109.47287 * 315.00552 * 19 18 17 43 43 H 0.96698 * 113.99961 * 300.00381 * 20 19 18 44 44 H 1.48493 * 110.00004 * 60.00203 * 21 19 18 45 45 H 1.48500 * 109.99810 * 181.32278 * 21 19 18 46 46 H 1.07999 * 120.00392 * 179.97438 * 22 18 17 47 47 H 1.08995 * 109.47347 * 59.99842 * 25 24 23 48 48 H 1.09001 * 109.46682 * 179.97438 * 25 24 23 49 49 H 1.09005 * 109.46736 * 299.99400 * 25 24 23 50 50 H 1.08006 * 120.00353 * 179.97438 * 26 23 22 51 51 H 1.07998 * 120.00326 * 180.29504 * 27 26 23 52 52 H 1.09005 * 109.47224 * 60.00408 * 28 10 9 53 53 H 1.09008 * 109.47230 * 180.02562 * 28 10 9 54 54 H 1.08993 * 109.47536 * 299.99802 * 29 6 4 55 55 H 1.09000 * 109.46884 * 60.00411 * 29 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3447 1.5448 0.0005 5 8 4.0807 0.5866 0.0005 6 6 3.9207 2.9373 0.0000 7 1 3.5844 3.4699 0.8895 8 6 5.4486 2.8573 0.0014 9 6 6.0334 4.2711 0.0002 10 6 5.5630 5.0166 -1.2502 11 1 5.8996 4.4835 -2.1393 12 7 6.1225 6.3705 -1.2510 13 6 6.2870 7.0311 -2.4143 14 8 5.9765 6.5026 -3.4608 15 6 6.8568 8.4261 -2.4145 16 8 6.9334 8.9092 -3.7573 17 6 7.4289 10.1629 -3.9350 18 6 7.5302 10.6938 -5.2122 19 6 7.0917 9.8811 -6.4030 20 8 5.6641 9.8509 -6.4596 21 14 7.7589 10.6534 -7.9616 22 6 8.0342 11.9674 -5.3929 23 6 8.4382 12.7151 -4.2970 24 8 8.9337 13.9689 -4.4748 25 6 9.3311 14.6818 -3.3017 26 6 8.3368 12.1841 -3.0195 27 6 7.8282 10.9128 -2.8385 28 6 4.0351 5.0967 -1.2516 29 6 3.4498 3.6835 -1.2499 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3634 -1.0277 -0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 5.7854 2.3244 -0.8880 36 1 5.7837 2.3257 0.8920 37 1 7.1219 4.2140 0.0017 38 1 5.6968 4.8042 0.8893 39 1 6.3708 6.7932 -0.4140 40 1 6.2129 9.0817 -1.8284 41 1 7.8550 8.4110 -1.9768 42 1 7.4731 8.8642 -6.3093 43 1 5.2477 9.4608 -5.6789 44 1 9.2426 10.6905 -7.9152 45 1 7.3070 9.8794 -9.1456 46 1 8.1135 12.3808 -6.3874 47 1 10.1158 14.1268 -2.7877 48 1 9.7072 15.6651 -3.5842 49 1 8.4736 14.7971 -2.6387 50 1 8.6518 12.7662 -2.1661 51 1 7.7448 10.5012 -1.8435 52 1 3.6984 5.6299 -0.3624 53 1 3.6998 5.6275 -2.1427 54 1 3.7861 3.1509 -2.1394 55 1 2.3613 3.7406 -1.2504 There are 74 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 74 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14589458_4974302.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 02:31:59 Heat of formation + Delta-G solvation = -208.399071 kcal Electronic energy + Delta-G solvation = -36791.575305 eV Core-core repulsion = 31760.778247 eV Total energy + Delta-G solvation = -5030.797058 eV No. of doubly occupied orbitals = 74 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 394.196 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -41.94577 -41.77591 -41.01007 -39.98347 -39.05834 -38.10072 -37.69022 -36.92399 -35.43053 -32.86173 -32.77492 -31.86732 -31.66718 -30.71993 -29.05243 -27.93238 -26.59243 -25.52828 -24.00350 -23.84806 -23.41733 -22.40526 -22.03651 -21.61470 -20.85480 -19.52978 -18.81635 -18.79448 -18.52184 -18.05340 -17.70858 -17.64963 -17.45705 -17.37913 -17.09280 -16.59990 -16.10489 -15.96134 -15.72558 -15.48066 -15.42999 -15.26731 -15.11600 -14.93526 -14.58112 -14.50059 -14.23086 -14.10235 -14.06869 -13.84254 -13.55494 -13.51257 -13.41562 -13.28108 -13.03820 -12.97247 -12.79329 -12.54781 -12.51977 -12.40760 -12.30741 -12.21517 -12.03049 -11.65160 -11.56408 -11.49317 -11.44033 -11.38180 -11.30145 -11.21938 -10.94061 -10.16886 -10.09171 -8.81518 -4.94384 0.07016 0.34029 1.06596 1.32945 1.44494 1.44960 1.57319 1.62199 1.90784 2.35698 2.54922 2.58115 3.40813 3.47461 3.52966 3.57833 3.63467 3.75221 3.85697 3.88755 3.94409 3.96259 4.00605 4.03179 4.09452 4.11206 4.14051 4.14884 4.21321 4.26783 4.28243 4.29198 4.30181 4.40498 4.45793 4.46434 4.59137 4.71167 4.73507 4.80491 4.80596 4.86391 4.90557 4.97784 5.02039 5.05931 5.07495 5.12809 5.12963 5.21426 5.22284 5.25095 5.39713 5.42155 5.45567 6.14191 6.42771 6.48555 6.52047 6.62762 7.14432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.053 3.947 3 O -0.360 6.360 4 C 0.462 3.538 5 O -0.542 6.542 6 C -0.073 4.073 7 H 0.140 0.860 8 C -0.100 4.100 9 C -0.112 4.112 10 C 0.143 3.857 11 H 0.060 0.940 12 N -0.704 5.704 13 C 0.513 3.487 14 O -0.571 6.571 15 C 0.037 3.963 16 O -0.317 6.317 17 C 0.090 3.910 18 C -0.119 4.119 19 C -0.081 4.081 20 O -0.545 6.545 21 Si 0.810 3.190 22 C -0.119 4.119 23 C 0.090 3.910 24 O -0.334 6.334 25 C 0.017 3.983 26 C -0.161 4.161 27 C -0.159 4.159 28 C -0.120 4.120 29 C -0.104 4.104 30 H 0.071 0.929 31 H 0.067 0.933 32 H 0.095 0.905 33 H 0.063 0.937 34 H 0.069 0.931 35 H 0.054 0.946 36 H 0.080 0.920 37 H 0.084 0.916 38 H 0.104 0.896 39 H 0.423 0.577 40 H 0.128 0.872 41 H 0.122 0.878 42 H 0.061 0.939 43 H 0.372 0.628 44 H -0.265 1.265 45 H -0.295 1.295 46 H 0.151 0.849 47 H 0.066 0.934 48 H 0.114 0.886 49 H 0.068 0.932 50 H 0.162 0.838 51 H 0.169 0.831 52 H 0.096 0.904 53 H 0.054 0.946 54 H 0.052 0.948 55 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.122 5.948 11.014 12.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.020 4.020 3 O -0.277 6.277 4 C 0.307 3.693 5 O -0.432 6.432 6 C -0.092 4.092 7 H 0.158 0.842 8 C -0.139 4.139 9 C -0.150 4.150 10 C 0.039 3.961 11 H 0.078 0.922 12 N -0.358 5.358 13 C 0.299 3.701 14 O -0.449 6.449 15 C -0.041 4.041 16 O -0.231 6.231 17 C 0.045 3.955 18 C -0.120 4.120 19 C -0.188 4.188 20 O -0.351 6.351 21 Si 0.712 3.288 22 C -0.137 4.137 23 C 0.045 3.955 24 O -0.248 6.248 25 C -0.077 4.077 26 C -0.180 4.180 27 C -0.177 4.177 28 C -0.158 4.158 29 C -0.142 4.142 30 H 0.090 0.910 31 H 0.086 0.914 32 H 0.114 0.886 33 H 0.082 0.918 34 H 0.087 0.913 35 H 0.073 0.927 36 H 0.099 0.901 37 H 0.103 0.897 38 H 0.122 0.878 39 H 0.261 0.739 40 H 0.146 0.854 41 H 0.140 0.860 42 H 0.079 0.921 43 H 0.220 0.780 44 H -0.190 1.190 45 H -0.223 1.223 46 H 0.169 0.831 47 H 0.085 0.915 48 H 0.132 0.868 49 H 0.087 0.913 50 H 0.179 0.821 51 H 0.186 0.814 52 H 0.114 0.886 53 H 0.073 0.927 54 H 0.071 0.929 55 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 0.411 5.397 8.701 10.247 hybrid contribution 0.114 -1.837 1.514 2.383 sum 0.525 3.560 10.214 10.830 Atomic orbital electron populations 1.21821 0.90642 1.04249 1.03777 1.23235 0.96961 0.79466 1.02346 1.86512 1.24354 1.33344 1.83455 1.24395 0.80532 0.93446 0.70960 1.90671 1.61153 1.44556 1.46807 1.21264 0.96584 0.88150 1.03213 0.84202 1.21374 0.91535 0.97518 1.03436 1.21737 1.01802 0.94145 0.97298 1.21011 0.93363 0.82112 0.99623 0.92166 1.45697 1.64655 1.16605 1.08828 1.20537 0.77897 0.87660 0.84017 1.90780 1.51235 1.69544 1.33331 1.22738 1.04797 0.92883 0.83659 1.86087 1.79609 1.28418 1.28954 1.18796 0.98286 0.84586 0.93843 1.19447 1.03872 0.95247 0.93473 1.25494 0.85170 1.01059 1.07090 1.86661 1.17069 1.85267 1.46100 0.92239 0.76703 0.88652 0.71227 1.20179 1.02144 0.92521 0.98851 1.18980 0.97029 0.85672 0.93822 1.86089 1.77584 1.24923 1.36180 1.23358 1.00476 0.97127 0.86763 1.21427 1.03126 0.96952 0.96470 1.21377 1.02365 0.95096 0.98866 1.21842 0.94395 0.96137 1.03462 1.21423 1.02007 0.95406 0.95374 0.91003 0.91384 0.88635 0.91823 0.91283 0.92683 0.90116 0.89723 0.87781 0.73923 0.85445 0.86045 0.92138 0.77980 1.19021 1.22253 0.83143 0.91539 0.86781 0.91350 0.82081 0.81405 0.88550 0.92690 0.92883 0.89493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.47 10.29 71.98 0.74 1.21 16 2 C 0.05 0.09 6.19 71.98 0.45 0.53 16 3 O -0.36 -1.31 10.12 -51.34 -0.52 -1.83 16 4 C 0.46 2.06 7.26 71.24 0.52 2.58 16 5 O -0.54 -6.07 15.73 21.96 0.35 -5.73 16 6 C -0.07 0.21 2.63 -11.54 -0.03 0.18 16 7 H 0.14 -1.17 8.14 -2.39 -0.02 -1.19 16 8 C -0.10 0.31 4.49 30.59 0.14 0.44 16 9 C -0.11 0.94 5.39 30.59 0.16 1.10 16 10 C 0.14 -0.55 2.46 44.99 0.11 -0.44 16 11 H 0.06 0.21 7.57 -2.39 -0.02 0.19 16 12 N -0.70 4.85 5.07 -442.55 -2.25 2.61 16 13 C 0.51 0.25 7.87 87.65 0.69 0.94 16 14 O -0.57 -7.16 16.16 16.00 0.26 -6.90 16 15 C 0.04 -0.20 5.22 71.23 0.37 0.18 16 16 O -0.32 -1.25 8.56 -74.27 -0.64 -1.89 16 17 C 0.09 0.27 6.62 22.49 0.15 0.42 16 18 C -0.12 -0.70 5.28 -19.78 -0.10 -0.80 16 19 C -0.08 -0.67 2.33 71.23 0.17 -0.50 16 20 O -0.54 -5.40 12.65 -148.98 -1.89 -7.28 16 21 Si 0.81 4.52 30.17 68.60 2.07 6.59 16 22 C -0.12 -0.51 8.59 22.36 0.19 -0.32 16 23 C 0.09 0.21 6.69 22.49 0.15 0.36 16 24 O -0.33 -0.63 10.50 -93.38 -0.98 -1.61 16 25 C 0.02 -0.10 9.81 113.37 1.11 1.01 16 26 C -0.16 0.39 9.03 22.35 0.20 0.59 16 27 C -0.16 0.48 9.03 22.35 0.20 0.69 16 28 C -0.12 0.47 5.49 30.58 0.17 0.64 16 29 C -0.10 0.24 5.13 30.58 0.16 0.39 16 30 H 0.07 -0.26 8.14 -2.39 -0.02 -0.28 16 31 H 0.07 -0.19 8.14 -2.39 -0.02 -0.21 16 32 H 0.10 -0.56 8.14 -2.39 -0.02 -0.58 16 33 H 0.06 0.18 8.13 -2.39 -0.02 0.16 16 34 H 0.07 0.12 8.13 -2.39 -0.02 0.10 16 35 H 0.05 0.09 8.10 -2.38 -0.02 0.07 16 36 H 0.08 -0.21 8.10 -2.39 -0.02 -0.23 16 37 H 0.08 -0.74 8.14 -2.39 -0.02 -0.76 16 38 H 0.10 -1.41 8.14 -2.39 -0.02 -1.43 16 39 H 0.42 -6.39 8.61 -92.71 -0.80 -7.19 16 40 H 0.13 -1.54 7.65 -2.39 -0.02 -1.56 16 41 H 0.12 -1.35 7.67 -2.39 -0.02 -1.37 16 42 H 0.06 0.66 7.82 -2.38 -0.02 0.64 16 43 H 0.37 2.72 8.60 -74.06 -0.64 2.08 16 44 H -0.26 -1.99 7.11 99.48 0.71 -1.29 16 45 H -0.29 -3.54 7.11 99.48 0.71 -2.83 16 46 H 0.15 0.25 5.13 -2.91 -0.01 0.23 16 47 H 0.07 -0.56 7.66 -2.39 -0.02 -0.58 16 48 H 0.11 -0.99 8.14 -2.39 -0.02 -1.01 16 49 H 0.07 -0.59 7.66 -2.38 -0.02 -0.60 16 50 H 0.16 -1.33 6.29 -2.91 -0.02 -1.35 16 51 H 0.17 -1.84 6.29 -2.91 -0.02 -1.86 16 52 H 0.10 -0.84 8.14 -2.38 -0.02 -0.86 16 53 H 0.05 0.07 8.14 -2.38 -0.02 0.05 16 54 H 0.05 0.09 8.14 -2.39 -0.02 0.07 16 55 H 0.09 -0.24 8.11 -2.39 -0.02 -0.26 16 Total: 0.00 -30.15 445.93 1.47 -28.67 By element: Atomic # 1 Polarization: -21.35 SS G_CDS: -0.47 Total: -21.83 kcal Atomic # 6 Polarization: 3.66 SS G_CDS: 5.54 Total: 9.20 kcal Atomic # 7 Polarization: 4.85 SS G_CDS: -2.25 Total: 2.61 kcal Atomic # 8 Polarization: -21.83 SS G_CDS: -3.42 Total: -25.24 kcal Atomic # 14 Polarization: 4.52 SS G_CDS: 2.07 Total: 6.59 kcal Total: -30.15 1.47 -28.67 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14589458_4974302.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -179.728 kcal (2) G-P(sol) polarization free energy of solvation -30.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -209.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -28.671 kcal (6) G-S(sol) free energy of system = (1) + (5) -208.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds