Wall clock time and date at job start Sun Mar 7 2021 02:32:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.45198 * 109.47364 * 2 1 4 4 C 1.34223 * 117.00015 * 179.97438 * 3 2 1 5 5 O 1.20824 * 119.99950 * 0.02562 * 4 3 2 6 6 C 1.50698 * 119.99935 * 179.97438 * 4 3 2 7 7 H 1.09003 * 109.47319 * 60.00693 * 6 4 3 8 8 C 1.53002 * 109.47236 * 180.02562 * 6 4 3 9 9 C 1.52995 * 109.47360 * 180.02562 * 8 6 4 10 10 C 1.53007 * 109.46859 * 299.99695 * 9 8 6 11 11 H 1.09002 * 109.46786 * 299.99756 * 10 9 8 12 12 N 1.46497 * 109.47054 * 180.02562 * 10 9 8 13 13 C 1.34774 * 120.00167 * 154.99945 * 12 10 9 14 14 O 1.21286 * 119.99939 * 359.97438 * 13 12 10 15 15 C 1.50698 * 120.00330 * 179.97438 * 13 12 10 16 16 O 1.42903 * 109.47391 * 180.02562 * 15 13 12 17 17 C 1.35994 * 116.99998 * 180.02562 * 16 15 13 18 18 C 1.39152 * 120.06855 * 179.97438 * 17 16 15 19 19 O 1.35991 * 120.07826 * 0.02562 * 18 17 16 20 20 C 1.42901 * 117.00415 * 180.02562 * 19 18 17 21 21 C 1.38571 * 119.84993 * 179.78761 * 18 17 16 22 22 C 1.38240 * 119.99863 * 0.48127 * 21 18 17 23 23 C 1.50705 * 119.92432 * 179.76522 * 22 21 18 24 24 O 1.42894 * 109.47171 * 299.72668 * 23 22 21 25 25 Si 1.86298 * 109.46780 * 179.72109 * 23 22 21 26 26 C 1.38246 * 120.14724 * 359.49487 * 22 21 18 27 27 C 1.38248 * 120.14664 * 0.27336 * 26 22 21 28 28 C 1.52997 * 109.47020 * 60.00302 * 10 9 8 29 29 C 1.52999 * 109.47250 * 300.00237 * 6 4 3 30 30 H 1.08996 * 109.47101 * 60.00083 * 1 2 3 31 31 H 1.09000 * 109.46951 * 180.02562 * 1 2 3 32 32 H 1.09008 * 109.47035 * 299.99952 * 1 2 3 33 33 H 1.08998 * 109.47005 * 239.99919 * 2 1 3 34 34 H 1.09006 * 109.46947 * 120.00461 * 2 1 3 35 35 H 1.08993 * 109.47580 * 59.99687 * 8 6 4 36 36 H 1.09004 * 109.46572 * 299.99937 * 8 6 4 37 37 H 1.09004 * 109.47605 * 179.97438 * 9 8 6 38 38 H 1.09005 * 109.47714 * 59.99336 * 9 8 6 39 39 H 0.97003 * 120.00121 * 334.99977 * 12 10 9 40 40 H 1.08994 * 109.47287 * 59.99879 * 15 13 12 41 41 H 1.09001 * 109.47283 * 300.00051 * 15 13 12 42 42 H 1.08998 * 109.47375 * 300.00668 * 20 19 18 43 43 H 1.08998 * 109.46986 * 60.00560 * 20 19 18 44 44 H 1.08997 * 109.47018 * 180.02562 * 20 19 18 45 45 H 1.07999 * 119.99992 * 180.22557 * 21 18 17 46 46 H 1.09004 * 109.46779 * 59.72992 * 23 22 21 47 47 H 0.96709 * 113.99337 * 180.02562 * 24 23 22 48 48 H 1.48506 * 109.99834 * 60.00830 * 25 23 22 49 49 H 1.48502 * 110.00011 * 181.32094 * 25 23 22 50 50 H 1.08003 * 119.92885 * 180.25568 * 26 22 21 51 51 H 1.07996 * 120.00023 * 179.97438 * 27 26 22 52 52 H 1.08991 * 109.47377 * 59.99817 * 28 10 9 53 53 H 1.09003 * 109.47060 * 180.02562 * 28 10 9 54 54 H 1.09001 * 109.47453 * 299.99920 * 29 6 4 55 55 H 1.08998 * 109.46831 * 60.00181 * 29 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3447 1.5447 0.0005 5 8 4.0807 0.5865 0.0005 6 6 3.9207 2.9373 0.0000 7 1 3.5845 3.4700 0.8896 8 6 5.4487 2.8572 0.0001 9 6 6.0335 4.2709 0.0002 10 6 5.5621 5.0179 -1.2492 11 1 5.8982 4.4857 -2.1391 12 7 6.1226 6.3714 -1.2494 13 6 6.2863 7.0328 -2.4123 14 8 5.9701 6.5072 -3.4586 15 6 6.8623 8.4253 -2.4125 16 8 6.9355 8.9103 -3.7547 17 6 7.4370 10.1619 -3.9325 18 6 7.5375 10.6974 -5.2129 19 8 7.1342 9.9706 -6.2892 20 6 7.2673 10.5839 -7.5730 21 6 8.0451 11.9748 -5.3884 22 6 8.4593 12.7103 -4.2937 23 6 9.0160 14.0974 -4.4870 24 8 10.1789 14.0329 -5.3148 25 14 9.4713 14.8200 -2.8313 26 6 8.3590 12.1785 -3.0216 27 6 7.8491 10.9065 -2.8391 28 6 4.0342 5.0981 -1.2493 29 6 3.4498 3.6835 -1.2499 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5139 0.8901 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 5.7847 2.3247 -0.8895 36 1 5.7845 2.3254 0.8904 37 1 7.1221 4.2139 0.0008 38 1 5.6975 4.8032 0.8901 39 1 6.3759 6.7917 -0.4127 40 1 7.8618 8.4052 -1.9781 41 1 6.2233 9.0830 -1.8233 42 1 6.6778 11.5003 -7.6009 43 1 8.3155 10.8205 -7.7557 44 1 6.9098 9.8988 -8.3418 45 1 8.1208 12.3941 -6.3808 46 1 8.2648 14.7271 -4.9639 47 1 10.5910 14.8918 -5.4815 48 1 10.4949 13.9706 -2.1707 49 1 9.9919 16.1999 -3.0052 50 1 8.6799 12.7579 -2.1684 51 1 7.7722 10.4932 -1.8443 52 1 3.6982 5.6302 -0.3594 53 1 3.6984 5.6298 -2.1396 54 1 3.7861 3.1509 -2.1395 55 1 2.3613 3.7406 -1.2503 There are 74 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 74 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14589458_60476.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 02:32:13 Heat of formation + Delta-G solvation = -203.602716 kcal Electronic energy + Delta-G solvation = -36430.580993 eV Core-core repulsion = 31399.991920 eV Total energy + Delta-G solvation = -5030.589073 eV No. of doubly occupied orbitals = 74 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 394.196 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -41.91472 -41.75328 -40.97590 -39.60498 -38.95352 -38.69259 -37.67842 -37.12008 -35.39288 -32.80564 -32.22141 -31.82957 -31.56253 -31.19353 -29.13131 -28.42874 -26.19249 -25.42592 -23.90054 -23.79799 -23.37781 -22.45626 -21.95541 -21.57324 -20.82255 -19.70915 -18.78363 -18.63825 -18.40232 -18.19187 -17.68557 -17.63501 -17.46373 -17.41800 -17.06366 -16.62995 -16.07890 -15.95190 -15.82257 -15.70765 -15.50119 -15.31539 -15.04951 -14.91152 -14.55034 -14.45494 -14.12228 -14.02432 -14.00039 -13.83116 -13.57211 -13.48078 -13.42870 -13.24982 -12.95247 -12.81637 -12.76112 -12.54870 -12.51163 -12.39837 -12.23543 -12.19081 -12.14972 -11.93399 -11.70316 -11.62566 -11.53975 -11.46223 -11.34135 -10.91220 -10.50054 -10.12979 -9.76259 -8.89882 -4.89228 0.17978 0.28355 1.08954 1.32692 1.49730 1.49767 1.64553 1.64868 1.98801 2.31223 2.53477 2.59690 3.37141 3.44560 3.52127 3.60740 3.66167 3.71866 3.90424 3.91482 3.93186 3.96518 4.02673 4.06820 4.07856 4.16486 4.17514 4.18037 4.28289 4.29705 4.30240 4.31466 4.33307 4.35626 4.43516 4.48444 4.61963 4.64701 4.65912 4.76300 4.82647 4.88088 4.93829 5.00522 5.05029 5.08515 5.10473 5.11960 5.15014 5.25763 5.28605 5.39809 5.42555 5.48099 5.59613 5.98168 6.45216 6.56782 6.59678 6.65103 7.19985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.053 3.947 3 O -0.360 6.360 4 C 0.462 3.538 5 O -0.542 6.542 6 C -0.073 4.073 7 H 0.141 0.859 8 C -0.100 4.100 9 C -0.112 4.112 10 C 0.143 3.857 11 H 0.059 0.941 12 N -0.703 5.703 13 C 0.512 3.488 14 O -0.573 6.573 15 C 0.033 3.967 16 O -0.314 6.314 17 C 0.085 3.915 18 C 0.076 3.924 19 O -0.334 6.334 20 C 0.021 3.979 21 C -0.153 4.153 22 C -0.082 4.082 23 C -0.089 4.089 24 O -0.560 6.560 25 Si 0.774 3.226 26 C -0.112 4.112 27 C -0.158 4.158 28 C -0.120 4.120 29 C -0.104 4.104 30 H 0.067 0.933 31 H 0.095 0.905 32 H 0.071 0.929 33 H 0.063 0.937 34 H 0.069 0.931 35 H 0.054 0.946 36 H 0.081 0.919 37 H 0.084 0.916 38 H 0.105 0.895 39 H 0.423 0.577 40 H 0.125 0.875 41 H 0.132 0.868 42 H 0.067 0.933 43 H 0.059 0.941 44 H 0.111 0.889 45 H 0.141 0.859 46 H 0.093 0.907 47 H 0.395 0.605 48 H -0.293 1.293 49 H -0.289 1.289 50 H 0.158 0.842 51 H 0.179 0.821 52 H 0.097 0.903 53 H 0.053 0.947 54 H 0.052 0.948 55 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.755 6.666 8.137 10.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.020 4.020 3 O -0.277 6.277 4 C 0.307 3.693 5 O -0.432 6.432 6 C -0.092 4.092 7 H 0.159 0.841 8 C -0.139 4.139 9 C -0.149 4.149 10 C 0.038 3.962 11 H 0.077 0.923 12 N -0.357 5.357 13 C 0.298 3.702 14 O -0.451 6.451 15 C -0.045 4.045 16 O -0.228 6.228 17 C 0.039 3.961 18 C 0.031 3.969 19 O -0.249 6.249 20 C -0.074 4.074 21 C -0.172 4.172 22 C -0.083 4.083 23 C -0.197 4.197 24 O -0.370 6.370 25 Si 0.678 3.322 26 C -0.130 4.130 27 C -0.176 4.176 28 C -0.159 4.159 29 C -0.142 4.142 30 H 0.086 0.914 31 H 0.114 0.886 32 H 0.090 0.910 33 H 0.082 0.918 34 H 0.087 0.913 35 H 0.073 0.927 36 H 0.099 0.901 37 H 0.103 0.897 38 H 0.123 0.877 39 H 0.262 0.738 40 H 0.142 0.858 41 H 0.150 0.850 42 H 0.086 0.914 43 H 0.078 0.922 44 H 0.130 0.870 45 H 0.159 0.841 46 H 0.111 0.889 47 H 0.245 0.755 48 H -0.220 1.220 49 H -0.216 1.216 50 H 0.175 0.825 51 H 0.196 0.804 52 H 0.116 0.884 53 H 0.071 0.929 54 H 0.071 0.929 55 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -2.466 5.341 7.720 9.707 hybrid contribution 1.066 0.089 -1.370 1.738 sum -1.400 5.430 6.350 8.472 Atomic orbital electron populations 1.21821 0.90647 1.04235 1.03777 1.23235 0.96957 0.79483 1.02340 1.86514 1.24353 1.33325 1.83463 1.24392 0.80527 0.93439 0.70950 1.90670 1.61154 1.44549 1.46811 1.21267 0.96581 0.88143 1.03204 0.84128 1.21374 0.91540 0.97511 1.03433 1.21740 1.01812 0.94120 0.97262 1.21025 0.93389 0.82135 0.99650 0.92295 1.45680 1.64576 1.16674 1.08781 1.20568 0.77927 0.87683 0.83998 1.90780 1.51205 1.69611 1.33534 1.22809 1.04945 0.93016 0.83690 1.86223 1.79182 1.28364 1.29000 1.18562 0.99964 0.85509 0.92043 1.18655 1.00492 0.91686 0.86110 1.86185 1.80318 1.43433 1.14942 1.23279 1.02183 1.00219 0.81702 1.21008 1.02611 0.92629 1.00955 1.19272 0.99960 0.95779 0.93242 1.25100 0.90037 0.97467 1.07047 1.86550 1.43452 1.36781 1.70258 0.94108 0.86341 0.75077 0.76642 1.20966 1.00214 0.95359 0.96417 1.21367 1.02676 0.95177 0.98406 1.21857 0.94407 0.96148 1.03442 1.21441 1.02001 0.95352 0.95398 0.91382 0.88644 0.91004 0.91835 0.91285 0.92706 0.90073 0.89705 0.87683 0.73817 0.85753 0.85043 0.91415 0.92206 0.87030 0.84109 0.88867 0.75492 1.22035 1.21635 0.82532 0.80357 0.88420 0.92867 0.92906 0.89477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.44 10.29 71.98 0.74 1.18 16 2 C 0.05 0.10 6.19 71.98 0.45 0.55 16 3 O -0.36 -1.42 10.12 -51.34 -0.52 -1.94 16 4 C 0.46 2.24 7.25 71.24 0.52 2.76 16 5 O -0.54 -6.27 15.73 21.97 0.35 -5.92 16 6 C -0.07 0.17 2.63 -11.54 -0.03 0.14 16 7 H 0.14 -1.12 8.14 -2.39 -0.02 -1.14 16 8 C -0.10 0.24 4.49 30.59 0.14 0.38 16 9 C -0.11 0.84 5.39 30.60 0.16 1.00 16 10 C 0.14 -0.36 2.45 44.99 0.11 -0.25 16 11 H 0.06 0.29 7.58 -2.39 -0.02 0.27 16 12 N -0.70 3.67 5.08 -442.53 -2.25 1.42 16 13 C 0.51 1.66 7.87 87.66 0.69 2.35 16 14 O -0.57 -9.23 16.16 15.99 0.26 -8.97 16 15 C 0.03 -0.08 5.22 71.24 0.37 0.29 16 16 O -0.31 -2.89 9.45 -67.07 -0.63 -3.52 16 17 C 0.08 0.57 6.70 22.57 0.15 0.72 16 18 C 0.08 0.73 6.70 22.57 0.15 0.88 16 19 O -0.33 -4.14 10.28 -79.58 -0.82 -4.95 16 20 C 0.02 0.07 9.81 113.37 1.11 1.18 16 21 C -0.15 -0.89 8.60 22.35 0.19 -0.70 16 22 C -0.08 -0.21 5.42 -19.86 -0.11 -0.32 16 23 C -0.09 0.10 2.81 71.24 0.20 0.30 16 24 O -0.56 -1.11 12.75 -148.98 -1.90 -3.01 16 25 Si 0.77 -3.05 29.78 68.60 2.04 -1.01 16 26 C -0.11 0.12 8.66 22.27 0.19 0.31 16 27 C -0.16 0.19 9.04 22.35 0.20 0.40 16 28 C -0.12 0.34 5.50 30.61 0.17 0.51 16 29 C -0.10 0.16 5.14 30.61 0.16 0.31 16 30 H 0.07 -0.18 8.14 -2.39 -0.02 -0.20 16 31 H 0.09 -0.55 8.14 -2.39 -0.02 -0.57 16 32 H 0.07 -0.25 8.14 -2.38 -0.02 -0.27 16 33 H 0.06 0.19 8.13 -2.39 -0.02 0.17 16 34 H 0.07 0.13 8.13 -2.38 -0.02 0.12 16 35 H 0.05 0.13 8.10 -2.39 -0.02 0.11 16 36 H 0.08 -0.17 8.10 -2.38 -0.02 -0.19 16 37 H 0.08 -0.67 8.14 -2.38 -0.02 -0.69 16 38 H 0.10 -1.36 8.14 -2.38 -0.02 -1.38 16 39 H 0.42 -5.89 8.60 -92.71 -0.80 -6.69 16 40 H 0.12 -1.12 7.66 -2.39 -0.02 -1.14 16 41 H 0.13 -1.35 7.66 -2.39 -0.02 -1.37 16 42 H 0.07 0.02 7.65 -2.39 -0.02 0.00 16 43 H 0.06 0.12 7.68 -2.39 -0.02 0.10 16 44 H 0.11 0.07 8.14 -2.39 -0.02 0.05 16 45 H 0.14 0.54 6.30 -2.91 -0.02 0.52 16 46 H 0.09 -0.45 7.96 -2.38 -0.02 -0.47 16 47 H 0.39 -2.43 8.74 -74.05 -0.65 -3.08 16 48 H -0.29 -0.76 7.11 99.48 0.71 -0.05 16 49 H -0.29 -0.17 7.11 99.48 0.71 0.54 16 50 H 0.16 -1.05 4.87 -2.91 -0.01 -1.07 16 51 H 0.18 -1.82 6.30 -2.91 -0.02 -1.84 16 52 H 0.10 -0.77 8.14 -2.39 -0.02 -0.78 16 53 H 0.05 0.15 8.14 -2.39 -0.02 0.13 16 54 H 0.05 0.13 8.14 -2.39 -0.02 0.11 16 55 H 0.09 -0.19 8.11 -2.39 -0.02 -0.21 16 Total: 0.00 -36.49 446.74 1.61 -34.87 By element: Atomic # 1 Polarization: -18.50 SS G_CDS: -0.48 Total: -18.99 kcal Atomic # 6 Polarization: 6.45 SS G_CDS: 5.57 Total: 12.02 kcal Atomic # 7 Polarization: 3.67 SS G_CDS: -2.25 Total: 1.42 kcal Atomic # 8 Polarization: -25.05 SS G_CDS: -3.27 Total: -28.31 kcal Atomic # 14 Polarization: -3.05 SS G_CDS: 2.04 Total: -1.01 kcal Total: -36.49 1.61 -34.87 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14589458_60476.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -168.729 kcal (2) G-P(sol) polarization free energy of solvation -36.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -205.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.873 kcal (6) G-S(sol) free energy of system = (1) + (5) -203.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds