Wall clock time and date at job start Sun Mar 7 2021 02:32:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.45197 * 109.46987 * 2 1 4 4 C 1.34232 * 116.99655 * 180.02562 * 3 2 1 5 5 O 1.20821 * 119.99994 * 0.02562 * 4 3 2 6 6 C 1.50701 * 119.99504 * 179.97438 * 4 3 2 7 7 H 1.08996 * 109.47112 * 60.00209 * 6 4 3 8 8 C 1.53009 * 109.46908 * 180.02562 * 6 4 3 9 9 C 1.52993 * 109.47281 * 179.97438 * 8 6 4 10 10 C 1.53002 * 109.47445 * 300.00293 * 9 8 6 11 11 H 1.08999 * 109.46577 * 300.00227 * 10 9 8 12 12 N 1.46492 * 109.47164 * 179.97438 * 10 9 8 13 13 C 1.34782 * 120.00067 * 155.00006 * 12 10 9 14 14 O 1.21283 * 119.99581 * 359.97438 * 13 12 10 15 15 C 1.50701 * 120.00551 * 179.97438 * 13 12 10 16 16 O 1.42892 * 109.47260 * 179.97438 * 15 13 12 17 17 C 1.35917 * 116.99952 * 180.02562 * 16 15 13 18 18 C 1.38788 * 120.06323 * 179.97438 * 17 16 15 19 19 Br 1.89107 * 120.03252 * 0.04111 * 18 17 16 20 20 C 1.38233 * 119.93242 * 179.76660 * 18 17 16 21 21 C 1.38250 * 120.04414 * 0.50689 * 20 18 17 22 22 C 1.50699 * 119.94218 * 179.76810 * 21 20 18 23 23 O 1.42901 * 109.46830 * 119.72225 * 22 21 20 24 24 Si 1.86298 * 109.46950 * 359.72662 * 22 21 20 25 25 C 1.38278 * 120.11351 * 359.48739 * 21 20 18 26 26 C 1.38146 * 120.07848 * 0.25952 * 25 21 20 27 27 C 1.52995 * 109.46981 * 59.99507 * 10 9 8 28 28 C 1.52995 * 109.47657 * 300.00186 * 27 10 9 29 29 H 1.09000 * 109.46891 * 180.02562 * 1 2 3 30 30 H 1.09008 * 109.46944 * 300.00139 * 1 2 3 31 31 H 1.08998 * 109.47091 * 60.00132 * 1 2 3 32 32 H 1.08995 * 109.47119 * 239.99594 * 2 1 3 33 33 H 1.08998 * 109.47091 * 119.99868 * 2 1 3 34 34 H 1.08999 * 109.46890 * 59.99663 * 8 6 4 35 35 H 1.08998 * 109.46833 * 300.00472 * 8 6 4 36 36 H 1.08996 * 109.47208 * 180.02562 * 9 8 6 37 37 H 1.09008 * 109.47288 * 59.99785 * 9 8 6 38 38 H 0.96996 * 120.00433 * 334.99132 * 12 10 9 39 39 H 1.09003 * 109.46946 * 59.99270 * 15 13 12 40 40 H 1.09003 * 109.46577 * 300.00388 * 15 13 12 41 41 H 1.08004 * 119.98274 * 180.25301 * 20 18 17 42 42 H 1.08991 * 109.47351 * 239.72373 * 22 21 20 43 43 H 0.96708 * 114.00246 * 299.99864 * 23 22 21 44 44 H 1.48506 * 109.99834 * 180.02562 * 24 22 21 45 45 H 1.48502 * 110.00011 * 301.31529 * 24 22 21 46 46 H 1.08009 * 119.96258 * 180.23400 * 25 21 20 47 47 H 1.07995 * 120.02952 * 179.97438 * 26 25 21 48 48 H 1.09005 * 109.47335 * 60.00401 * 27 10 9 49 49 H 1.09007 * 109.46866 * 180.02562 * 27 10 9 50 50 H 1.08999 * 109.47563 * 300.00298 * 28 27 10 51 51 H 1.08996 * 109.47433 * 179.97438 * 28 27 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3447 1.5448 -0.0005 5 8 4.0807 0.5866 -0.0015 6 6 3.9207 2.9374 -0.0012 7 1 3.5851 3.4697 0.8888 8 6 5.4487 2.8573 -0.0023 9 6 6.0335 4.2711 -0.0036 10 6 5.5609 5.0174 -1.2528 11 1 5.8961 4.4847 -2.1428 12 7 6.1204 6.3713 -1.2537 13 6 6.2830 7.0326 -2.4168 14 8 5.9666 6.5065 -3.4628 15 6 6.8580 8.4256 -2.4178 16 8 6.9312 8.9098 -3.7602 17 6 7.4315 10.1609 -3.9384 18 6 7.5317 10.6941 -5.2159 19 35 6.9711 9.6810 -6.7110 20 6 8.0364 11.9687 -5.3936 21 6 8.4508 12.7076 -4.3012 22 6 9.0056 14.0949 -4.4981 23 8 8.1937 15.0369 -3.7940 24 14 9.0067 14.5112 -6.3140 25 6 8.3518 12.1783 -3.0276 26 6 7.8432 10.9070 -2.8438 27 6 4.0330 5.0974 -1.2517 28 6 3.4482 3.6837 -1.2505 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.8934 -0.5139 -0.8899 33 1 1.8934 -0.5138 0.8900 34 1 5.7839 2.3250 -0.8925 35 1 5.7853 2.3252 0.8874 36 1 7.1219 4.2140 -0.0049 37 1 5.6982 4.8038 0.8864 38 1 6.3737 6.7920 -0.4172 39 1 7.8577 8.4062 -1.9838 40 1 6.2188 9.0828 -1.8283 41 1 8.1110 12.3860 -6.3870 42 1 10.0252 14.1363 -4.1152 43 1 7.2711 15.0548 -4.0833 44 1 9.5522 15.8768 -6.5216 45 1 9.8217 13.5202 -7.0617 46 1 8.6727 12.7592 -2.1754 47 1 7.7666 10.4942 -1.8488 48 1 3.6977 5.6301 -0.3617 49 1 3.6964 5.6288 -2.1419 50 1 3.7834 3.1510 -2.1404 51 1 2.3597 3.7407 -1.2491 There are 71 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 71 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14589458_6201210.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 02:32:18 Heat of formation + Delta-G solvation = -164.275146 kcal Electronic energy + Delta-G solvation = -33994.927414 eV Core-core repulsion = 29100.445521 eV Total energy + Delta-G solvation = -4894.481893 eV No. of doubly occupied orbitals = 71 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 442.092 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.91103 -41.64016 -40.82776 -39.43272 -38.77417 -37.68817 -37.19207 -35.39987 -33.49212 -32.79945 -32.17700 -31.84013 -31.46023 -30.31568 -29.10699 -26.39748 -25.46293 -24.10798 -23.84000 -23.55693 -22.45328 -21.98612 -21.58904 -20.83711 -19.53773 -18.79509 -18.51758 -18.13351 -17.69467 -17.60585 -17.46782 -17.28758 -16.88937 -16.46322 -16.03048 -15.89928 -15.67284 -15.52170 -15.27783 -15.08754 -14.91888 -14.77676 -14.55792 -14.29574 -14.15840 -14.02828 -13.92684 -13.75429 -13.47122 -13.39494 -13.26324 -12.95853 -12.78673 -12.53615 -12.41596 -12.39189 -12.23457 -12.20313 -12.16190 -11.85720 -11.85204 -11.63208 -11.54626 -11.46938 -11.34837 -11.19529 -10.92416 -10.45759 -10.13538 -9.98766 -9.29887 -5.03101 -0.02305 0.09397 0.64720 1.08319 1.29202 1.41797 1.48812 1.59474 1.63483 1.93327 2.41278 2.51581 3.42233 3.49551 3.50060 3.56380 3.59295 3.64704 3.80162 3.85926 3.91292 3.95889 4.01968 4.04564 4.05502 4.10318 4.12203 4.16798 4.29008 4.30855 4.32307 4.35839 4.42813 4.47186 4.61483 4.63895 4.75608 4.80007 4.82065 4.87550 4.93108 5.04321 5.04908 5.07951 5.09707 5.14431 5.24800 5.27763 5.31269 5.41774 5.45607 5.49647 6.07426 6.49680 6.64419 6.78122 7.18440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.053 3.947 3 O -0.360 6.360 4 C 0.462 3.538 5 O -0.542 6.542 6 C -0.073 4.073 7 H 0.140 0.860 8 C -0.100 4.100 9 C -0.112 4.112 10 C 0.144 3.856 11 H 0.060 0.940 12 N -0.704 5.704 13 C 0.512 3.488 14 O -0.568 6.568 15 C 0.033 3.967 16 O -0.305 6.305 17 C 0.150 3.850 18 C -0.140 4.140 19 Br -0.051 7.051 20 C -0.056 4.056 21 C -0.151 4.151 22 C -0.052 4.052 23 O -0.550 6.550 24 Si 0.743 3.257 25 C -0.033 4.033 26 C -0.194 4.194 27 C -0.120 4.120 28 C -0.104 4.104 29 H 0.095 0.905 30 H 0.071 0.929 31 H 0.067 0.933 32 H 0.063 0.937 33 H 0.069 0.931 34 H 0.055 0.945 35 H 0.080 0.920 36 H 0.085 0.915 37 H 0.104 0.896 38 H 0.423 0.577 39 H 0.128 0.872 40 H 0.132 0.868 41 H 0.145 0.855 42 H 0.118 0.882 43 H 0.396 0.604 44 H -0.292 1.292 45 H -0.290 1.290 46 H 0.156 0.844 47 H 0.174 0.826 48 H 0.096 0.904 49 H 0.054 0.946 50 H 0.053 0.947 51 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.662 3.984 8.775 9.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.020 4.020 3 O -0.277 6.277 4 C 0.307 3.693 5 O -0.432 6.432 6 C -0.092 4.092 7 H 0.158 0.842 8 C -0.139 4.139 9 C -0.150 4.150 10 C 0.039 3.961 11 H 0.079 0.921 12 N -0.358 5.358 13 C 0.298 3.702 14 O -0.445 6.445 15 C -0.045 4.045 16 O -0.217 6.217 17 C 0.102 3.898 18 C -0.220 4.220 19 Br 0.035 6.965 20 C -0.075 4.075 21 C -0.153 4.153 22 C -0.164 4.164 23 O -0.358 6.358 24 Si 0.651 3.349 25 C -0.051 4.051 26 C -0.213 4.213 27 C -0.158 4.158 28 C -0.142 4.142 29 H 0.113 0.887 30 H 0.090 0.910 31 H 0.086 0.914 32 H 0.082 0.918 33 H 0.087 0.913 34 H 0.073 0.927 35 H 0.099 0.901 36 H 0.103 0.897 37 H 0.122 0.878 38 H 0.261 0.739 39 H 0.145 0.855 40 H 0.150 0.850 41 H 0.163 0.837 42 H 0.136 0.864 43 H 0.246 0.754 44 H -0.220 1.220 45 H -0.217 1.217 46 H 0.174 0.826 47 H 0.191 0.809 48 H 0.114 0.886 49 H 0.073 0.927 50 H 0.071 0.929 51 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -1.961 3.091 6.922 7.830 hybrid contribution 0.652 -0.517 0.600 1.026 sum -1.309 2.575 7.522 8.058 Atomic orbital electron populations 1.21823 0.90655 1.04234 1.03775 1.23233 0.96952 0.79483 1.02338 1.86516 1.24366 1.33320 1.83467 1.24403 0.80526 0.93457 0.70955 1.90670 1.61149 1.44557 1.46801 1.21271 0.96596 0.88127 1.03219 0.84214 1.21374 0.91517 0.97544 1.03430 1.21738 1.01803 0.94113 0.97313 1.21007 0.93326 0.82120 0.99633 0.92123 1.45687 1.64647 1.16648 1.08841 1.20503 0.78066 0.87609 0.84043 1.90796 1.50931 1.69468 1.33338 1.22851 1.05214 0.93188 0.83210 1.86244 1.78093 1.27946 1.29409 1.18807 0.93373 0.84525 0.93121 1.21138 1.12537 0.97396 0.90979 1.96775 1.89681 1.72279 1.37813 1.20916 0.95549 0.91322 0.99737 1.20296 1.03850 0.97643 0.93512 1.24810 0.96937 0.85809 1.08815 1.86474 1.26299 1.58937 1.64076 0.93989 0.89671 0.76597 0.74662 1.21207 0.93097 0.93645 0.97200 1.21613 1.04947 0.96113 0.98615 1.21848 0.94454 0.96105 1.03441 1.21432 1.01980 0.95410 0.95383 0.88652 0.91018 0.91370 0.91819 0.91304 0.92659 0.90147 0.89688 0.87806 0.73904 0.85461 0.85049 0.83750 0.86444 0.75385 1.21997 1.21672 0.82636 0.80885 0.88562 0.92724 0.92851 0.89530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.49 10.29 71.98 0.74 1.23 16 2 C 0.05 0.08 6.19 71.98 0.45 0.53 16 3 O -0.36 -1.26 10.12 -51.44 -0.52 -1.78 16 4 C 0.46 2.00 7.25 71.24 0.52 2.51 16 5 O -0.54 -5.99 15.73 21.98 0.35 -5.65 16 6 C -0.07 0.22 2.63 -11.54 -0.03 0.19 16 7 H 0.14 -1.19 8.14 -2.39 -0.02 -1.20 16 8 C -0.10 0.32 4.49 30.59 0.14 0.46 16 9 C -0.11 0.96 5.39 30.59 0.16 1.12 16 10 C 0.14 -0.57 2.45 44.99 0.11 -0.46 16 11 H 0.06 0.20 7.58 -2.39 -0.02 0.18 16 12 N -0.70 5.03 5.08 -442.54 -2.25 2.78 16 13 C 0.51 0.18 7.87 87.66 0.69 0.87 16 14 O -0.57 -7.24 16.16 16.00 0.26 -6.98 16 15 C 0.03 -0.19 5.22 71.24 0.37 0.18 16 16 O -0.30 -1.17 9.00 -73.58 -0.66 -1.84 16 17 C 0.15 0.23 6.68 22.52 0.15 0.38 16 18 C -0.14 -0.59 6.24 22.40 0.14 -0.45 16 19 Br -0.05 -0.40 33.16 -20.37 -0.68 -1.08 16 20 C -0.06 -0.03 8.40 22.27 0.19 0.16 16 21 C -0.15 0.37 5.39 -19.85 -0.11 0.27 16 22 C -0.05 0.17 2.82 71.24 0.20 0.37 16 23 O -0.55 1.83 12.77 -148.98 -1.90 -0.07 16 24 Si 0.74 -1.39 29.78 68.60 2.04 0.65 16 25 C -0.03 0.16 9.60 22.26 0.21 0.37 16 26 C -0.19 1.01 9.04 22.36 0.20 1.21 16 27 C -0.12 0.48 5.49 30.59 0.17 0.65 16 28 C -0.10 0.25 5.13 30.59 0.16 0.41 16 29 H 0.09 -0.57 8.14 -2.39 -0.02 -0.59 16 30 H 0.07 -0.27 8.14 -2.38 -0.02 -0.29 16 31 H 0.07 -0.20 8.14 -2.39 -0.02 -0.22 16 32 H 0.06 0.17 8.13 -2.39 -0.02 0.15 16 33 H 0.07 0.11 8.13 -2.39 -0.02 0.09 16 34 H 0.05 0.08 8.10 -2.39 -0.02 0.06 16 35 H 0.08 -0.22 8.10 -2.39 -0.02 -0.24 16 36 H 0.08 -0.76 8.14 -2.39 -0.02 -0.78 16 37 H 0.10 -1.42 8.14 -2.38 -0.02 -1.44 16 38 H 0.42 -6.55 8.60 -92.71 -0.80 -7.35 16 39 H 0.13 -1.57 7.66 -2.39 -0.02 -1.59 16 40 H 0.13 -1.71 7.66 -2.39 -0.02 -1.73 16 41 H 0.15 -0.19 4.87 -2.91 -0.01 -0.20 16 42 H 0.12 -0.37 7.96 -2.39 -0.02 -0.39 16 43 H 0.40 -4.23 8.70 -74.05 -0.64 -4.87 16 44 H -0.29 -1.50 7.11 99.48 0.71 -0.80 16 45 H -0.29 -1.15 7.11 99.48 0.71 -0.45 16 46 H 0.16 -1.28 8.06 -2.91 -0.02 -1.31 16 47 H 0.17 -2.22 6.30 -2.91 -0.02 -2.24 16 48 H 0.10 -0.85 8.14 -2.38 -0.02 -0.87 16 49 H 0.05 0.07 8.14 -2.38 -0.02 0.05 16 50 H 0.05 0.08 8.14 -2.39 -0.02 0.06 16 51 H 0.09 -0.25 8.11 -2.39 -0.02 -0.27 16 Total: 0.00 -30.86 437.86 0.67 -30.19 By element: Atomic # 1 Polarization: -25.80 SS G_CDS: -0.43 Total: -26.22 kcal Atomic # 6 Polarization: 5.54 SS G_CDS: 4.46 Total: 10.00 kcal Atomic # 7 Polarization: 5.03 SS G_CDS: -2.25 Total: 2.78 kcal Atomic # 8 Polarization: -13.84 SS G_CDS: -2.48 Total: -16.32 kcal Atomic # 14 Polarization: -1.39 SS G_CDS: 2.04 Total: 0.65 kcal Atomic # 35 Polarization: -0.40 SS G_CDS: -0.68 Total: -1.08 kcal Total: -30.86 0.67 -30.19 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14589458_6201210.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -134.084 kcal (2) G-P(sol) polarization free energy of solvation -30.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -164.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.671 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.191 kcal (6) G-S(sol) free energy of system = (1) + (5) -164.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds