Wall clock time and date at job start Sun Mar 7 2021 02:32:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 O 1.45202 * 109.46919 * 2 1 4 4 C 1.34230 * 116.99836 * 180.02562 * 3 2 1 5 5 O 1.20833 * 119.99930 * 359.97438 * 4 3 2 6 6 C 1.50697 * 120.00262 * 180.27336 * 4 3 2 7 7 H 1.09000 * 109.47461 * 59.71633 * 6 4 3 8 8 C 1.52996 * 109.47491 * 179.72204 * 6 4 3 9 9 C 1.53003 * 109.47301 * 179.97438 * 8 6 4 10 10 C 1.52996 * 109.46915 * 299.99916 * 9 8 6 11 11 H 1.08994 * 109.47269 * 299.99538 * 10 9 8 12 12 N 1.46507 * 109.46742 * 179.97438 * 10 9 8 13 13 C 1.34781 * 119.99696 * 155.00353 * 12 10 9 14 14 O 1.21692 * 119.99749 * 359.97438 * 13 12 10 15 15 C 1.46677 * 119.99640 * 180.02562 * 13 12 10 16 16 C 1.37871 * 126.22974 * 179.69000 * 15 13 12 17 17 C 1.39834 * 107.08507 * 179.84545 * 16 15 13 18 18 C 1.35454 * 107.86445 * 0.41609 * 17 16 15 19 19 C 1.50696 * 125.56691 * 179.70705 * 18 17 16 20 20 O 1.42903 * 109.47198 * 245.04132 * 19 18 17 21 21 Si 1.86308 * 109.46891 * 5.03673 * 19 18 17 22 22 N 1.35537 * 108.86764 * 359.74149 * 18 17 16 23 23 C 1.53003 * 109.47207 * 60.00200 * 10 9 8 24 24 C 1.53002 * 109.46796 * 299.72392 * 6 4 3 25 25 H 1.08997 * 109.47687 * 300.00275 * 1 2 3 26 26 H 1.09002 * 109.47633 * 60.00402 * 1 2 3 27 27 H 1.08999 * 109.47371 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47242 * 239.99429 * 2 1 3 29 29 H 1.09004 * 109.46797 * 119.99245 * 2 1 3 30 30 H 1.09004 * 109.47066 * 299.99799 * 8 6 4 31 31 H 1.08994 * 109.47405 * 59.99969 * 8 6 4 32 32 H 1.09008 * 109.46785 * 59.99617 * 9 8 6 33 33 H 1.09001 * 109.47245 * 179.97438 * 9 8 6 34 34 H 0.96995 * 119.99837 * 334.99817 * 12 10 9 35 35 H 1.08003 * 126.45744 * 359.95532 * 16 15 13 36 36 H 1.07997 * 126.06790 * 180.17574 * 17 16 15 37 37 H 1.09002 * 109.47540 * 125.03512 * 19 18 17 38 38 H 0.96699 * 113.99907 * 59.99478 * 20 19 18 39 39 H 1.48498 * 109.99856 * 179.97438 * 21 19 18 40 40 H 1.48497 * 110.00353 * 301.32188 * 21 19 18 41 41 H 0.97001 * 125.67460 * 180.02562 * 22 18 17 42 42 H 1.08994 * 109.47116 * 59.99825 * 23 10 9 43 43 H 1.09004 * 109.47205 * 179.97438 * 23 10 9 44 44 H 1.09008 * 109.46845 * 299.99275 * 24 6 4 45 45 H 1.08993 * 109.47452 * 60.00035 * 24 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3446 1.5449 -0.0005 5 8 4.0807 0.5866 -0.0005 6 6 3.9207 2.9374 0.0057 7 1 3.5816 3.4669 0.8960 8 6 5.4485 2.8573 0.0107 9 6 6.0334 4.2712 0.0163 10 6 5.5661 5.0213 -1.2326 11 1 5.9051 4.4915 -2.1227 12 7 6.1256 6.3753 -1.2269 13 6 6.2931 7.0401 -2.3873 14 8 5.9800 6.5155 -3.4397 15 6 6.8538 8.3955 -2.3815 16 6 7.0850 9.1863 -3.4870 17 6 7.6197 10.3927 -3.0244 18 6 7.7126 10.3159 -1.6752 19 6 8.2439 11.3973 -0.7702 20 8 9.4410 10.9423 -0.1361 21 14 8.6145 12.9217 -1.7753 22 7 7.2504 9.1072 -1.2722 23 6 4.0382 5.1014 -1.2376 24 6 3.4534 3.6881 -1.2429 25 1 -0.3634 0.5138 0.8899 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 1.8933 -0.5139 -0.8899 29 1 1.8932 -0.5137 0.8901 30 1 5.7814 2.3225 0.9002 31 1 5.7876 2.3279 -0.8797 32 1 5.6943 4.8010 0.9065 33 1 7.1219 4.2141 0.0203 34 1 6.3754 6.7932 -0.3880 35 1 6.8883 8.9242 -4.5161 36 1 7.9110 11.2347 -3.6348 37 1 7.4984 11.6349 -0.0113 38 1 10.1497 10.7124 -0.7525 39 1 9.1387 13.9959 -0.8942 40 1 9.6060 12.6034 -2.8339 41 1 7.2061 8.7958 -0.3546 42 1 3.6992 5.6313 -0.3475 43 1 3.7053 5.6362 -2.1272 44 1 3.7925 3.1586 -2.1334 45 1 2.3649 3.7452 -1.2465 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14589458_6580494.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 02:32:29 Heat of formation + Delta-G solvation = -123.313924 kcal Electronic energy + Delta-G solvation = -27089.647100 eV Core-core repulsion = 23073.779462 eV Total energy + Delta-G solvation = -4015.867638 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 323.161 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.53488 -41.86331 -40.67774 -39.01735 -37.82016 -37.68509 -35.49362 -32.84339 -32.28599 -31.88103 -31.66296 -30.58001 -27.01450 -25.45722 -23.94957 -23.84299 -22.99384 -21.98455 -21.43960 -21.33784 -20.84553 -19.77710 -18.76436 -18.19823 -17.71605 -17.66031 -17.27289 -16.70088 -16.37768 -16.14951 -15.66520 -15.33693 -15.20204 -15.15994 -14.93668 -14.61331 -14.50958 -14.34694 -14.14875 -13.96441 -13.83347 -13.62368 -13.50667 -13.29528 -12.96415 -12.82150 -12.54514 -12.43745 -12.32747 -12.23288 -11.89210 -11.66026 -11.56385 -11.51399 -11.45850 -11.20950 -10.81689 -10.26013 -10.06354 -9.28002 -4.82169 0.30803 1.07268 1.23729 1.55585 1.60280 1.70538 1.89721 1.99805 2.22997 2.28519 3.36828 3.42857 3.50581 3.59467 3.61638 3.81551 3.88166 3.95246 4.01453 4.03856 4.13781 4.25101 4.26266 4.28535 4.29973 4.33950 4.39146 4.52750 4.56846 4.72142 4.80738 4.87273 4.89140 4.97040 4.99824 5.05555 5.06408 5.12001 5.12991 5.20382 5.22670 5.37639 5.43421 5.59690 5.79813 6.29554 6.41219 6.47894 6.63426 7.05425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.053 3.947 3 O -0.360 6.360 4 C 0.463 3.537 5 O -0.541 6.541 6 C -0.074 4.074 7 H 0.138 0.862 8 C -0.099 4.099 9 C -0.114 4.114 10 C 0.143 3.857 11 H 0.067 0.933 12 N -0.712 5.712 13 C 0.589 3.411 14 O -0.570 6.570 15 C -0.062 4.062 16 C -0.119 4.119 17 C -0.206 4.206 18 C 0.033 3.967 19 C -0.061 4.061 20 O -0.548 6.548 21 Si 0.792 3.208 22 N -0.510 5.510 23 C -0.120 4.120 24 C -0.102 4.102 25 H 0.070 0.930 26 H 0.068 0.932 27 H 0.095 0.905 28 H 0.064 0.936 29 H 0.068 0.932 30 H 0.080 0.920 31 H 0.058 0.942 32 H 0.099 0.901 33 H 0.082 0.918 34 H 0.410 0.590 35 H 0.144 0.856 36 H 0.165 0.835 37 H 0.136 0.864 38 H 0.389 0.611 39 H -0.299 1.299 40 H -0.284 1.284 41 H 0.429 0.571 42 H 0.091 0.909 43 H 0.057 0.943 44 H 0.057 0.943 45 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.768 4.207 4.575 6.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.020 4.020 3 O -0.276 6.276 4 C 0.308 3.692 5 O -0.431 6.431 6 C -0.093 4.093 7 H 0.156 0.844 8 C -0.137 4.137 9 C -0.152 4.152 10 C 0.039 3.961 11 H 0.085 0.915 12 N -0.362 5.362 13 C 0.378 3.622 14 O -0.449 6.449 15 C -0.176 4.176 16 C -0.146 4.146 17 C -0.230 4.230 18 C -0.086 4.086 19 C -0.170 4.170 20 O -0.356 6.356 21 Si 0.695 3.305 22 N -0.108 5.108 23 C -0.158 4.158 24 C -0.141 4.141 25 H 0.089 0.911 26 H 0.087 0.913 27 H 0.114 0.886 28 H 0.083 0.917 29 H 0.087 0.913 30 H 0.098 0.902 31 H 0.077 0.923 32 H 0.118 0.882 33 H 0.100 0.900 34 H 0.247 0.753 35 H 0.162 0.838 36 H 0.182 0.818 37 H 0.154 0.846 38 H 0.239 0.761 39 H -0.226 1.226 40 H -0.210 1.210 41 H 0.269 0.731 42 H 0.110 0.890 43 H 0.076 0.924 44 H 0.076 0.924 45 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -2.580 4.050 4.275 6.429 hybrid contribution 1.105 -1.351 0.552 1.830 sum -1.475 2.699 4.827 5.724 Atomic orbital electron populations 1.21821 0.90647 1.04249 1.03776 1.23240 0.96956 0.79445 1.02372 1.86516 1.24301 1.33361 1.83455 1.24340 0.80552 0.93346 0.70980 1.90674 1.61145 1.44510 1.46783 1.21255 0.96515 0.88253 1.03258 0.84421 1.21354 0.91605 0.97162 1.03579 1.21746 1.01720 0.94440 0.97253 1.21070 0.93542 0.81696 0.99836 0.91477 1.45797 1.64837 1.17113 1.08492 1.17234 0.77186 0.83784 0.84033 1.90852 1.52790 1.68660 1.32569 1.20300 1.14444 0.94616 0.88193 1.21478 1.01341 0.93754 0.98062 1.20935 1.08920 0.99888 0.93276 1.21237 1.03988 0.88370 0.95051 1.25033 0.88849 1.01207 1.01918 1.86580 1.24563 1.86749 1.37747 0.93306 0.87485 0.73333 0.76330 1.41880 1.47409 1.12714 1.08779 1.21833 0.94189 0.96352 1.03429 1.21421 1.02071 0.95106 0.95474 0.91081 0.91315 0.88626 0.91713 0.91340 0.90167 0.92323 0.88241 0.89953 0.75316 0.83834 0.81802 0.84588 0.76077 1.22645 1.21012 0.73138 0.89038 0.92400 0.92443 0.89341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.48 10.29 71.98 0.74 1.22 16 2 C 0.05 0.08 6.19 71.98 0.45 0.53 16 3 O -0.36 -1.31 10.13 -51.41 -0.52 -1.83 16 4 C 0.46 2.11 7.25 71.23 0.52 2.63 16 5 O -0.54 -6.06 15.73 21.94 0.35 -5.72 16 6 C -0.07 0.18 2.63 -11.54 -0.03 0.15 16 7 H 0.14 -1.03 8.14 -2.39 -0.02 -1.05 16 8 C -0.10 0.23 4.49 30.59 0.14 0.36 16 9 C -0.11 0.75 5.39 30.59 0.16 0.91 16 10 C 0.14 -0.29 2.46 44.99 0.11 -0.18 16 11 H 0.07 0.28 7.58 -2.39 -0.02 0.26 16 12 N -0.71 2.07 5.07 -446.49 -2.26 -0.20 16 13 C 0.59 2.81 7.75 86.45 0.67 3.48 16 14 O -0.57 -7.83 16.55 -4.32 -0.07 -7.90 16 15 C -0.06 -0.13 7.06 40.35 0.28 0.15 16 16 C -0.12 -0.42 10.65 22.57 0.24 -0.18 16 17 C -0.21 0.20 9.32 22.01 0.21 0.41 16 18 C 0.03 -0.11 6.46 41.34 0.27 0.16 16 19 C -0.06 0.35 3.08 71.23 0.22 0.57 16 20 O -0.55 1.52 12.88 -148.98 -1.92 -0.40 16 21 Si 0.79 -4.31 30.56 68.60 2.10 -2.21 16 22 N -0.51 1.99 5.99 -171.94 -1.03 0.96 16 23 C -0.12 0.33 5.49 30.58 0.17 0.50 16 24 C -0.10 0.21 5.13 30.58 0.16 0.37 16 25 H 0.07 -0.26 8.14 -2.39 -0.02 -0.28 16 26 H 0.07 -0.21 8.14 -2.39 -0.02 -0.23 16 27 H 0.10 -0.58 8.14 -2.39 -0.02 -0.59 16 28 H 0.06 0.16 8.13 -2.39 -0.02 0.14 16 29 H 0.07 0.12 8.13 -2.38 -0.02 0.10 16 30 H 0.08 -0.14 8.10 -2.38 -0.02 -0.16 16 31 H 0.06 0.11 8.10 -2.39 -0.02 0.09 16 32 H 0.10 -1.12 8.14 -2.38 -0.02 -1.14 16 33 H 0.08 -0.54 8.14 -2.39 -0.02 -0.56 16 34 H 0.41 -3.94 7.73 -92.71 -0.72 -4.66 16 35 H 0.14 0.65 8.06 -2.91 -0.02 0.62 16 36 H 0.16 -0.76 6.19 -2.91 -0.02 -0.78 16 37 H 0.14 -1.18 7.96 -2.39 -0.02 -1.20 16 38 H 0.39 -2.78 8.70 -74.06 -0.64 -3.43 16 39 H -0.30 -0.59 7.11 99.48 0.71 0.12 16 40 H -0.28 0.17 7.11 99.48 0.71 0.87 16 41 H 0.43 -4.06 8.19 -92.71 -0.76 -4.82 16 42 H 0.09 -0.62 8.14 -2.39 -0.02 -0.64 16 43 H 0.06 0.12 8.14 -2.38 -0.02 0.10 16 44 H 0.06 0.07 8.14 -2.38 -0.02 0.05 16 45 H 0.09 -0.25 8.12 -2.39 -0.02 -0.27 16 Total: 0.00 -23.53 373.05 -0.12 -23.66 By element: Atomic # 1 Polarization: -16.37 SS G_CDS: -1.06 Total: -17.43 kcal Atomic # 6 Polarization: 6.77 SS G_CDS: 4.30 Total: 11.07 kcal Atomic # 7 Polarization: 4.06 SS G_CDS: -3.30 Total: 0.76 kcal Atomic # 8 Polarization: -13.68 SS G_CDS: -2.17 Total: -15.85 kcal Atomic # 14 Polarization: -4.31 SS G_CDS: 2.10 Total: -2.21 kcal Total: -23.53 -0.12 -23.66 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14589458_6580494.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.655 kcal (2) G-P(sol) polarization free energy of solvation -23.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.659 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds