Wall clock time and date at job start Sun Mar 7 2021 02:32:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.45194 * 109.46979 * 2 1 4 4 C 1.34233 * 116.99930 * 180.02562 * 3 2 1 5 5 O 1.20825 * 119.99777 * 359.97438 * 4 3 2 6 6 C 1.50701 * 120.00152 * 180.02562 * 4 3 2 7 7 H 1.09003 * 109.47034 * 59.99955 * 6 4 3 8 8 C 1.52995 * 109.46972 * 179.97438 * 6 4 3 9 9 C 1.53004 * 109.47146 * 179.97438 * 8 6 4 10 10 C 1.52997 * 109.47284 * 300.00659 * 9 8 6 11 11 H 1.09003 * 109.47209 * 299.99608 * 10 9 8 12 12 N 1.46500 * 109.47046 * 179.97438 * 10 9 8 13 13 C 1.34780 * 119.99869 * 155.00201 * 12 10 9 14 14 O 1.21651 * 119.99938 * 359.97438 * 13 12 10 15 15 C 1.46991 * 120.00141 * 179.97438 * 13 12 10 16 16 C 1.35804 * 125.14346 * 179.71771 * 15 13 12 17 17 C 1.46255 * 106.09313 * 179.86135 * 16 15 13 18 18 C 1.39773 * 134.15870 * 180.09430 * 17 16 15 19 19 C 1.50701 * 120.09038 * 0.32668 * 18 17 16 20 20 O 1.42900 * 109.47067 * 74.95593 * 19 18 17 21 21 Si 1.86302 * 109.47356 * 194.95488 * 19 18 17 22 22 C 1.36626 * 119.81777 * 180.28314 * 18 17 16 23 23 C 1.38769 * 120.49497 * 0.04325 * 22 18 17 24 24 C 1.38261 * 120.67775 * 359.97438 * 23 22 18 25 25 O 1.35960 * 120.12412 * 180.02562 * 24 23 22 26 26 C 1.42902 * 117.00091 * 359.97371 * 25 24 23 27 27 C 1.39456 * 119.75548 * 359.97438 * 24 23 22 28 28 O 1.34778 * 133.24249 * 180.02562 * 27 24 23 29 29 C 1.53004 * 109.47234 * 59.99385 * 10 9 8 30 30 C 1.52992 * 109.47262 * 300.00292 * 29 10 9 31 31 H 1.09001 * 109.47002 * 299.99655 * 1 2 3 32 32 H 1.08993 * 109.46955 * 60.00092 * 1 2 3 33 33 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 34 34 H 1.09001 * 109.46801 * 120.00191 * 2 1 3 35 35 H 1.09001 * 109.46998 * 239.99787 * 2 1 3 36 36 H 1.08995 * 109.47557 * 299.99966 * 8 6 4 37 37 H 1.09003 * 109.46849 * 60.00366 * 8 6 4 38 38 H 1.09003 * 109.46678 * 60.00592 * 9 8 6 39 39 H 1.08996 * 109.47213 * 180.02562 * 9 8 6 40 40 H 0.96993 * 120.00397 * 334.99308 * 12 10 9 41 41 H 1.08002 * 126.95627 * 0.02562 * 16 15 13 42 42 H 1.09000 * 109.47041 * 314.95348 * 19 18 17 43 43 H 0.96700 * 114.00277 * 59.99668 * 20 19 18 44 44 H 1.48500 * 109.99833 * 58.67977 * 21 19 18 45 45 H 1.48493 * 110.00412 * 179.97438 * 21 19 18 46 46 H 1.08003 * 119.75711 * 180.02562 * 22 18 17 47 47 H 1.07993 * 119.66392 * 179.97438 * 23 22 18 48 48 H 1.09007 * 109.46812 * 60.00215 * 26 25 24 49 49 H 1.08998 * 109.47668 * 179.97438 * 26 25 24 50 50 H 1.09003 * 109.46880 * 300.00543 * 26 25 24 51 51 H 1.09003 * 109.46859 * 60.00555 * 29 10 9 52 52 H 1.09003 * 109.47093 * 179.97438 * 29 10 9 53 53 H 1.09003 * 109.47398 * 299.99933 * 30 29 10 54 54 H 1.08996 * 109.46988 * 179.97438 * 30 29 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3448 1.5448 -0.0005 5 8 4.0808 0.5866 -0.0005 6 6 3.9208 2.9374 0.0000 7 1 3.5853 3.4690 0.8905 8 6 5.4486 2.8573 -0.0001 9 6 6.0335 4.2711 -0.0002 10 6 5.5618 5.0181 -1.2493 11 1 5.8976 4.4860 -2.1394 12 7 6.1213 6.3720 -1.2490 13 6 6.2847 7.0339 -2.4117 14 8 5.9679 6.5068 -3.4613 15 6 6.8456 8.3926 -2.4114 16 6 7.0597 9.1501 -3.5180 17 6 7.6203 10.4143 -3.0418 18 6 8.0456 11.5886 -3.6692 19 6 7.9573 11.7191 -5.1679 20 8 6.5965 11.9330 -5.5481 21 14 8.9927 13.1633 -5.7276 22 6 8.5408 12.6182 -2.9198 23 6 8.6258 12.5070 -1.5392 24 6 8.2113 11.3546 -0.8975 25 8 8.2991 11.2580 0.4558 26 6 8.8307 12.3860 1.1537 27 6 7.7017 10.2921 -1.6433 28 8 7.2299 9.0739 -1.3120 29 6 4.0338 5.0982 -1.2491 30 6 3.4491 3.6844 -1.2491 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8899 33 1 -0.3633 -1.0277 -0.0005 34 1 1.8933 -0.5139 0.8900 35 1 1.8934 -0.5139 -0.8900 36 1 5.7847 2.3248 0.8895 37 1 5.7845 2.3255 -0.8904 38 1 5.6977 4.8032 0.8899 39 1 7.1220 4.2140 -0.0008 40 1 6.3741 6.7922 -0.4122 41 1 6.8547 8.8758 -4.5423 42 1 8.3257 10.8055 -5.6345 43 1 6.2028 12.7305 -5.1685 44 1 10.4045 12.9680 -5.3103 45 1 8.9147 13.3024 -7.2039 46 1 8.8688 13.5253 -3.4056 47 1 9.0197 13.3289 -0.9601 48 1 8.2063 13.2588 0.9623 49 1 8.8452 12.1778 2.2235 50 1 9.8455 12.5823 0.8075 51 1 3.6980 5.6303 -0.3591 52 1 3.6978 5.6308 -2.1388 53 1 3.7849 3.1522 -2.1391 54 1 2.3606 3.7415 -1.2485 There are 75 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 75 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14589458_6672420.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 02:32:33 Heat of formation + Delta-G solvation = -163.682106 kcal Electronic energy + Delta-G solvation = -38046.211425 eV Core-core repulsion = 32916.438778 eV Total energy + Delta-G solvation = -5129.772647 eV No. of doubly occupied orbitals = 75 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 404.181 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -43.77882 -41.90341 -41.15480 -40.52751 -39.14936 -39.06089 -37.71137 -37.00401 -35.57430 -33.67323 -32.81077 -32.03130 -31.88739 -31.48534 -30.51160 -28.50618 -26.41502 -25.97677 -24.68215 -24.00404 -23.88638 -23.52507 -22.12473 -21.85082 -21.75297 -20.99521 -19.74308 -19.02261 -18.76151 -18.55592 -17.91817 -17.79596 -17.68267 -17.61120 -17.32572 -16.94373 -16.60018 -16.22099 -16.14196 -15.88439 -15.74996 -15.44868 -15.22025 -14.95430 -14.76493 -14.56959 -14.55695 -14.49786 -14.21193 -14.12900 -13.85502 -13.57833 -13.52937 -13.40685 -13.31722 -13.26514 -12.96348 -12.85842 -12.54823 -12.45403 -12.40448 -12.28735 -12.23880 -12.08956 -11.91331 -11.69817 -11.67097 -11.56672 -11.50448 -11.28678 -11.03372 -10.44824 -10.34675 -9.84106 -9.01141 -5.00561 -0.69549 0.09518 0.58942 1.07595 1.14616 1.30107 1.60413 1.67959 1.85332 1.86896 2.00354 2.13882 2.39351 3.14374 3.40162 3.43687 3.52024 3.59935 3.62296 3.68425 3.80257 3.85593 3.86559 3.95473 3.97106 4.00625 4.03004 4.13041 4.16843 4.23933 4.27191 4.30246 4.34550 4.38751 4.40497 4.44511 4.45224 4.54048 4.71228 4.78507 4.80566 4.81101 4.85346 4.86702 4.87810 5.00447 5.03571 5.04505 5.05855 5.12267 5.12884 5.19653 5.21550 5.30011 5.37357 5.43312 5.57002 6.17985 6.28685 6.63860 6.78699 6.79683 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.053 3.947 3 O -0.360 6.360 4 C 0.464 3.536 5 O -0.541 6.541 6 C -0.075 4.075 7 H 0.137 0.863 8 C -0.098 4.098 9 C -0.115 4.115 10 C 0.140 3.860 11 H 0.075 0.925 12 N -0.697 5.697 13 C 0.603 3.397 14 O -0.545 6.545 15 C -0.032 4.032 16 C -0.117 4.117 17 C -0.099 4.099 18 C -0.109 4.109 19 C -0.081 4.081 20 O -0.555 6.555 21 Si 0.796 3.204 22 C -0.079 4.079 23 C -0.165 4.165 24 C 0.137 3.863 25 O -0.333 6.333 26 C 0.013 3.987 27 C 0.021 3.979 28 O -0.179 6.179 29 C -0.122 4.122 30 C -0.101 4.101 31 H 0.070 0.930 32 H 0.068 0.932 33 H 0.095 0.905 34 H 0.068 0.932 35 H 0.065 0.935 36 H 0.081 0.919 37 H 0.061 0.939 38 H 0.098 0.902 39 H 0.083 0.917 40 H 0.418 0.582 41 H 0.168 0.832 42 H 0.096 0.904 43 H 0.396 0.604 44 H -0.280 1.280 45 H -0.301 1.301 46 H 0.176 0.824 47 H 0.184 0.816 48 H 0.078 0.922 49 H 0.115 0.885 50 H 0.074 0.926 51 H 0.090 0.910 52 H 0.060 0.940 53 H 0.060 0.940 54 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.235 8.866 6.634 11.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.020 4.020 3 O -0.276 6.276 4 C 0.309 3.691 5 O -0.430 6.430 6 C -0.094 4.094 7 H 0.155 0.845 8 C -0.136 4.136 9 C -0.153 4.153 10 C 0.036 3.964 11 H 0.093 0.907 12 N -0.347 5.347 13 C 0.388 3.612 14 O -0.424 6.424 15 C -0.082 4.082 16 C -0.138 4.138 17 C -0.101 4.101 18 C -0.110 4.110 19 C -0.189 4.189 20 O -0.363 6.363 21 Si 0.700 3.300 22 C -0.096 4.096 23 C -0.184 4.184 24 C 0.091 3.909 25 O -0.247 6.247 26 C -0.080 4.080 27 C -0.027 4.027 28 O -0.081 6.081 29 C -0.160 4.160 30 C -0.139 4.139 31 H 0.089 0.911 32 H 0.087 0.913 33 H 0.114 0.886 34 H 0.087 0.913 35 H 0.083 0.917 36 H 0.100 0.900 37 H 0.080 0.920 38 H 0.116 0.884 39 H 0.102 0.898 40 H 0.256 0.744 41 H 0.185 0.815 42 H 0.114 0.886 43 H 0.246 0.754 44 H -0.207 1.207 45 H -0.229 1.229 46 H 0.193 0.807 47 H 0.201 0.799 48 H 0.096 0.904 49 H 0.133 0.867 50 H 0.093 0.907 51 H 0.109 0.891 52 H 0.078 0.922 53 H 0.079 0.921 54 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 0.411 7.587 5.543 9.405 hybrid contribution 0.138 -1.106 0.056 1.116 sum 0.549 6.481 5.600 8.583 Atomic orbital electron populations 1.21823 0.90666 1.04243 1.03762 1.23242 0.96942 0.79442 1.02389 1.86516 1.24298 1.33370 1.83462 1.24301 0.80549 0.93281 0.70989 1.90671 1.61133 1.44470 1.46764 1.21262 0.96533 0.88343 1.03265 0.84498 1.21350 0.91567 0.96885 1.03767 1.21756 1.01853 0.94571 0.97100 1.21227 0.93766 0.81007 1.00397 0.90667 1.45898 1.63103 1.17186 1.08556 1.16668 0.77731 0.82034 0.84741 1.90897 1.52090 1.66942 1.32486 1.21942 1.06316 0.94592 0.85343 1.22837 0.99661 0.91651 0.99666 1.19600 1.03382 0.95718 0.91361 1.19680 1.01726 0.92647 0.96922 1.25361 0.91171 1.10614 0.91757 1.86504 1.25094 1.50805 1.73901 0.93857 0.76218 0.81892 0.77983 1.20794 0.97400 0.98300 0.93084 1.21433 1.04394 0.96816 0.95724 1.17993 0.98191 0.91291 0.83435 1.86144 1.79805 1.43656 1.15121 1.23501 0.99459 0.87369 0.97714 1.19222 1.04583 0.85788 0.93149 1.84007 1.66751 1.24307 1.33038 1.21867 0.93897 0.96686 1.03592 1.21421 1.02102 0.94840 0.95584 0.91097 0.91331 0.88615 0.91334 0.91680 0.90038 0.92043 0.88364 0.89820 0.74420 0.81482 0.88614 0.75427 1.20661 1.22934 0.80742 0.79902 0.90383 0.86675 0.90719 0.89096 0.92163 0.92125 0.89215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.40 10.29 71.98 0.74 1.15 16 2 C 0.05 0.11 6.19 71.98 0.45 0.55 16 3 O -0.36 -1.53 10.12 -51.45 -0.52 -2.05 16 4 C 0.46 2.41 7.25 71.24 0.52 2.92 16 5 O -0.54 -6.33 15.73 21.97 0.35 -5.98 16 6 C -0.08 0.11 2.63 -11.54 -0.03 0.08 16 7 H 0.14 -0.84 8.14 -2.39 -0.02 -0.86 16 8 C -0.10 0.12 4.49 30.59 0.14 0.26 16 9 C -0.12 0.52 5.39 30.59 0.16 0.68 16 10 C 0.14 -0.01 2.45 44.99 0.11 0.10 16 11 H 0.08 0.34 7.58 -2.39 -0.02 0.33 16 12 N -0.70 -0.94 5.07 -446.21 -2.26 -3.20 16 13 C 0.60 4.97 7.76 86.54 0.67 5.64 16 14 O -0.54 -7.99 16.49 -4.19 -0.07 -8.06 16 15 C -0.03 -0.27 7.07 24.00 0.17 -0.10 16 16 C -0.12 -1.05 10.68 23.79 0.25 -0.79 16 17 C -0.10 -0.66 6.16 -20.24 -0.12 -0.78 16 18 C -0.11 -0.13 5.26 -19.87 -0.10 -0.23 16 19 C -0.08 -0.04 2.70 71.24 0.19 0.15 16 20 O -0.55 -0.83 12.88 -148.98 -1.92 -2.75 16 21 Si 0.80 -3.04 29.93 68.60 2.05 -0.98 16 22 C -0.08 0.36 8.62 22.02 0.19 0.55 16 23 C -0.17 0.73 9.03 22.40 0.20 0.93 16 24 C 0.14 0.31 6.70 22.57 0.15 0.46 16 25 O -0.33 -0.51 10.50 -93.10 -0.98 -1.49 16 26 C 0.01 -0.11 9.81 113.37 1.11 1.01 16 27 C 0.02 0.14 7.35 23.14 0.17 0.31 16 28 O -0.18 -1.42 10.28 -13.43 -0.14 -1.56 16 29 C -0.12 0.14 5.49 30.59 0.17 0.31 16 30 C -0.10 0.12 5.13 30.59 0.16 0.28 16 31 H 0.07 -0.22 8.14 -2.39 -0.02 -0.24 16 32 H 0.07 -0.17 8.14 -2.39 -0.02 -0.19 16 33 H 0.10 -0.53 8.14 -2.39 -0.02 -0.55 16 34 H 0.07 0.15 8.13 -2.39 -0.02 0.13 16 35 H 0.06 0.19 8.13 -2.39 -0.02 0.17 16 36 H 0.08 -0.07 8.10 -2.39 -0.02 -0.09 16 37 H 0.06 0.14 8.10 -2.39 -0.02 0.12 16 38 H 0.10 -0.83 8.14 -2.39 -0.02 -0.85 16 39 H 0.08 -0.38 8.14 -2.39 -0.02 -0.40 16 40 H 0.42 -1.14 8.32 -92.71 -0.77 -1.91 16 41 H 0.17 1.49 8.06 -2.91 -0.02 1.47 16 42 H 0.10 0.33 7.96 -2.39 -0.02 0.31 16 43 H 0.40 -2.99 8.70 -74.06 -0.64 -3.63 16 44 H -0.28 -0.13 7.11 99.48 0.71 0.58 16 45 H -0.30 -1.32 7.11 99.48 0.71 -0.62 16 46 H 0.18 -2.13 5.07 -2.91 -0.01 -2.14 16 47 H 0.18 -2.17 6.26 -2.91 -0.02 -2.19 16 48 H 0.08 -0.89 7.66 -2.38 -0.02 -0.91 16 49 H 0.11 -1.18 8.14 -2.39 -0.02 -1.20 16 50 H 0.07 -0.81 7.66 -2.39 -0.02 -0.83 16 51 H 0.09 -0.42 8.14 -2.39 -0.02 -0.44 16 52 H 0.06 0.19 8.14 -2.39 -0.02 0.17 16 53 H 0.06 0.09 8.14 -2.39 -0.02 0.07 16 54 H 0.09 -0.19 8.11 -2.39 -0.02 -0.20 16 Total: 0.00 -27.86 444.96 1.38 -26.48 By element: Atomic # 1 Polarization: -13.47 SS G_CDS: -0.42 Total: -13.89 kcal Atomic # 6 Polarization: 8.20 SS G_CDS: 5.29 Total: 13.49 kcal Atomic # 7 Polarization: -0.94 SS G_CDS: -2.26 Total: -3.20 kcal Atomic # 8 Polarization: -18.62 SS G_CDS: -3.28 Total: -21.90 kcal Atomic # 14 Polarization: -3.04 SS G_CDS: 2.05 Total: -0.98 kcal Total: -27.86 1.38 -26.48 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14589458_6672420.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -137.206 kcal (2) G-P(sol) polarization free energy of solvation -27.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -165.064 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -26.476 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds