Wall clock time and date at job start Sun Mar 7 2021 02:32:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.45205 * 109.47143 * 2 1 4 4 C 1.34222 * 116.99736 * 179.97438 * 3 2 1 5 5 O 1.20826 * 120.00394 * 359.97438 * 4 3 2 6 6 C 1.50707 * 119.99750 * 179.97438 * 4 3 2 7 7 H 1.08991 * 109.47046 * 59.99774 * 6 4 3 8 8 C 1.52996 * 109.46997 * 180.02562 * 6 4 3 9 9 C 1.53002 * 109.47060 * 180.02562 * 8 6 4 10 10 C 1.53005 * 109.47004 * 299.99662 * 9 8 6 11 11 H 1.08999 * 109.46735 * 300.00023 * 10 9 8 12 12 N 1.46497 * 109.47285 * 180.02562 * 10 9 8 13 13 C 1.34776 * 119.99926 * 155.00188 * 12 10 9 14 14 O 1.21701 * 120.00204 * 359.97438 * 13 12 10 15 15 C 1.46591 * 119.99652 * 179.97438 * 13 12 10 16 16 C 1.36644 * 125.45451 * 180.02562 * 15 13 12 17 17 C 1.37474 * 113.29545 * 180.02562 * 16 15 13 18 18 C 1.50697 * 122.44762 * 180.02562 * 17 16 15 19 19 C 1.33817 * 115.10344 * 359.97438 * 17 16 15 20 20 C 1.50694 * 124.52866 * 180.02562 * 19 17 16 21 21 O 1.42900 * 109.46849 * 45.09705 * 20 19 17 22 22 Si 1.86296 * 109.47381 * 165.09895 * 20 19 17 23 23 S 1.70620 * 110.95010 * 0.26347 * 19 17 16 24 24 C 1.53004 * 109.46922 * 59.99797 * 10 9 8 25 25 C 1.52998 * 109.47118 * 300.00027 * 24 10 9 26 26 H 1.08997 * 109.46962 * 300.00551 * 1 2 3 27 27 H 1.08999 * 109.46617 * 60.00267 * 1 2 3 28 28 H 1.09004 * 109.46667 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47483 * 239.99404 * 2 1 3 30 30 H 1.09004 * 109.47065 * 119.99644 * 2 1 3 31 31 H 1.08991 * 109.47648 * 59.99847 * 8 6 4 32 32 H 1.09004 * 109.47111 * 299.99623 * 8 6 4 33 33 H 1.09000 * 109.47289 * 179.97438 * 9 8 6 34 34 H 1.08999 * 109.47394 * 59.99282 * 9 8 6 35 35 H 0.97004 * 119.99822 * 334.99560 * 12 10 9 36 36 H 1.08005 * 123.35489 * 0.06783 * 16 15 13 37 37 H 1.09007 * 109.47085 * 264.22618 * 18 17 16 38 38 H 1.08993 * 109.47492 * 24.23198 * 18 17 16 39 39 H 1.09005 * 109.47111 * 144.23360 * 18 17 16 40 40 H 1.09006 * 109.46791 * 285.09907 * 20 19 17 41 41 H 0.96704 * 114.00093 * 180.02562 * 21 20 19 42 42 H 1.48499 * 109.99825 * 299.99776 * 22 20 19 43 43 H 1.48497 * 110.00188 * 61.32112 * 22 20 19 44 44 H 1.08998 * 109.46707 * 60.00509 * 24 10 9 45 45 H 1.08999 * 109.46646 * 180.02562 * 24 10 9 46 46 H 1.08991 * 109.47161 * 300.00209 * 25 24 10 47 47 H 1.09000 * 109.46960 * 179.97438 * 25 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3690 0.0000 4 6 3.3447 1.5448 0.0005 5 8 4.0808 0.5866 0.0015 6 6 3.9208 2.9374 0.0000 7 1 3.5844 3.4701 0.8894 8 6 5.4486 2.8573 0.0001 9 6 6.0334 4.2712 0.0002 10 6 5.5621 5.0181 -1.2491 11 1 5.8981 4.4859 -2.1390 12 7 6.1225 6.3717 -1.2494 13 6 6.2861 7.0330 -2.4123 14 8 5.9688 6.5056 -3.4622 15 6 6.8464 8.3876 -2.4125 16 6 7.0594 9.1571 -3.5214 17 6 7.5969 10.3891 -3.2331 18 6 7.9142 11.4030 -4.3020 19 6 7.8168 10.6227 -1.9340 20 6 8.3972 11.8992 -1.3819 21 8 7.7644 13.0187 -2.0051 22 14 8.1094 11.9677 0.4574 23 16 7.3584 9.2798 -0.9866 24 6 4.0341 5.0981 -1.2493 25 6 3.4494 3.6843 -1.2494 26 1 -0.3633 0.5139 0.8899 27 1 -0.3632 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.8934 -0.5139 -0.8899 30 1 1.8934 -0.5138 0.8901 31 1 5.7847 2.3248 -0.8895 32 1 5.7845 2.3256 0.8904 33 1 7.1219 4.2141 0.0008 34 1 5.6974 4.8034 0.8901 35 1 6.3757 6.7919 -0.4126 36 1 6.8278 8.8303 -4.5244 37 1 8.9659 11.3234 -4.5775 38 1 7.2938 11.2138 -5.1779 39 1 7.7127 12.4051 -3.9235 40 1 9.4680 11.9284 -1.5835 41 1 8.0897 13.8759 -1.6975 42 1 6.6532 11.9286 0.7454 43 1 8.7893 10.8262 1.1207 44 1 3.6981 5.6304 -0.3594 45 1 3.6983 5.6299 -2.1396 46 1 3.7855 3.1522 -2.1392 47 1 2.3609 3.7413 -1.2491 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_14589458_6739946.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 02:32:38 Heat of formation + Delta-G solvation = -135.856577 kcal Electronic energy + Delta-G solvation = -28802.342200 eV Core-core repulsion = 24656.745070 eV Total energy + Delta-G solvation = -4145.597130 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 354.138 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.78121 -40.99613 -39.86135 -38.94957 -37.57658 -37.40416 -35.34213 -32.85408 -32.43171 -31.93510 -30.86122 -30.18599 -26.79236 -25.30866 -24.30401 -23.92318 -23.49297 -21.99079 -21.66032 -20.96463 -19.99281 -19.13050 -18.65021 -18.55410 -17.78988 -17.55487 -17.36559 -16.97721 -16.23593 -16.09613 -15.90947 -15.46745 -15.31582 -15.00331 -14.89378 -14.67268 -14.54372 -14.46047 -14.43131 -14.14782 -13.86407 -13.58188 -13.35582 -13.18807 -13.02809 -12.95409 -12.90352 -12.77533 -12.55071 -12.52953 -12.42419 -12.30709 -12.14817 -12.04849 -11.69811 -11.49501 -11.46561 -11.27870 -11.01435 -10.60295 -10.18689 -9.72504 -9.43383 -5.37058 -0.62676 0.30458 0.64829 1.01531 1.23663 1.30525 1.45162 1.65588 1.77116 1.99559 2.18695 3.15341 3.42369 3.45669 3.55797 3.62196 3.74430 3.84590 3.96669 3.97612 4.00697 4.10661 4.12834 4.17998 4.23644 4.25948 4.30228 4.31681 4.38567 4.52302 4.59427 4.62929 4.73774 4.79751 4.81112 4.84370 4.89740 4.90905 4.99639 5.01859 5.04817 5.06322 5.15102 5.19534 5.38082 5.40147 5.50341 5.51150 6.34225 6.42655 6.78948 7.09535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.061 3.939 3 O -0.357 6.357 4 C 0.465 3.535 5 O -0.506 6.506 6 C -0.081 4.081 7 H 0.111 0.889 8 C -0.100 4.100 9 C -0.126 4.126 10 C 0.143 3.857 11 H 0.095 0.905 12 N -0.725 5.725 13 C 0.594 3.406 14 O -0.522 6.522 15 C -0.259 4.259 16 C -0.047 4.047 17 C -0.081 4.081 18 C -0.105 4.105 19 C -0.195 4.195 20 C -0.033 4.033 21 O -0.537 6.537 22 Si 0.668 3.332 23 S 0.173 5.827 24 C -0.128 4.128 25 C -0.107 4.107 26 H 0.067 0.933 27 H 0.067 0.933 28 H 0.081 0.919 29 H 0.071 0.929 30 H 0.070 0.930 31 H 0.078 0.922 32 H 0.081 0.919 33 H 0.079 0.921 34 H 0.073 0.927 35 H 0.397 0.603 36 H 0.158 0.842 37 H 0.068 0.932 38 H 0.065 0.935 39 H 0.096 0.904 40 H 0.085 0.915 41 H 0.385 0.615 42 H -0.236 1.236 43 H -0.236 1.236 44 H 0.070 0.930 45 H 0.077 0.923 46 H 0.073 0.927 47 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.304 5.382 4.393 7.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.013 4.013 3 O -0.274 6.274 4 C 0.308 3.692 5 O -0.393 6.393 6 C -0.100 4.100 7 H 0.129 0.871 8 C -0.138 4.138 9 C -0.164 4.164 10 C 0.039 3.961 11 H 0.113 0.887 12 N -0.375 5.375 13 C 0.381 3.619 14 O -0.400 6.400 15 C -0.378 4.378 16 C -0.080 4.080 17 C -0.094 4.094 18 C -0.163 4.163 19 C -0.314 4.314 20 C -0.146 4.146 21 O -0.345 6.345 22 Si 0.567 3.433 23 S 0.441 5.559 24 C -0.167 4.167 25 C -0.146 4.146 26 H 0.086 0.914 27 H 0.087 0.913 28 H 0.100 0.900 29 H 0.089 0.911 30 H 0.089 0.911 31 H 0.097 0.903 32 H 0.099 0.901 33 H 0.098 0.902 34 H 0.092 0.908 35 H 0.232 0.768 36 H 0.175 0.825 37 H 0.086 0.914 38 H 0.084 0.916 39 H 0.114 0.886 40 H 0.103 0.897 41 H 0.233 0.767 42 H -0.160 1.160 43 H -0.160 1.160 44 H 0.089 0.911 45 H 0.096 0.904 46 H 0.092 0.908 47 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 0.623 3.441 5.620 6.619 hybrid contribution 0.230 0.119 -1.503 1.525 sum 0.853 3.560 4.116 5.509 Atomic orbital electron populations 1.21821 0.92342 1.03249 1.03647 1.23080 0.95591 0.79895 1.02727 1.86505 1.24419 1.32703 1.83771 1.23719 0.80689 0.92581 0.72198 1.90688 1.60459 1.43144 1.45010 1.21179 0.96684 0.89874 1.02287 0.87073 1.21385 0.91555 0.96316 1.04557 1.21831 1.01658 0.95611 0.97338 1.21116 0.93267 0.81682 1.00042 0.88668 1.45931 1.65640 1.17442 1.08527 1.16924 0.77544 0.83449 0.84021 1.90860 1.50400 1.67620 1.31078 1.24642 1.15006 1.00248 0.97911 1.20767 0.95841 0.91877 0.99502 1.18736 1.00636 0.95823 0.94185 1.20746 1.01508 0.98601 0.95488 1.23114 1.10264 1.00529 0.97446 1.23977 0.98141 0.84302 1.08132 1.86459 1.65275 1.15617 1.67113 0.94760 0.83552 0.89438 0.75541 1.82889 1.57987 1.05989 1.09043 1.21936 0.94598 0.96700 1.03472 1.21491 1.01795 0.95170 0.96108 0.91393 0.91350 0.90021 0.91106 0.91139 0.90318 0.90083 0.90225 0.90825 0.76840 0.82493 0.91375 0.91613 0.88556 0.89685 0.76662 1.15966 1.16024 0.91109 0.90409 0.90829 0.89830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.19 10.29 37.16 0.38 0.57 16 2 C 0.06 0.04 6.19 37.16 0.23 0.27 16 3 O -0.36 -0.71 10.12 -39.24 -0.40 -1.11 16 4 C 0.47 1.09 7.26 36.01 0.26 1.36 16 5 O -0.51 -2.64 15.73 -18.75 -0.29 -2.93 16 6 C -0.08 0.04 2.63 -91.77 -0.24 -0.20 16 7 H 0.11 -0.23 8.14 -51.93 -0.42 -0.65 16 8 C -0.10 0.06 4.49 -26.73 -0.12 -0.06 16 9 C -0.13 0.23 5.39 -26.73 -0.14 0.09 16 10 C 0.14 0.00 2.45 -67.93 -0.17 -0.16 16 11 H 0.10 0.18 7.57 -51.93 -0.39 -0.22 16 12 N -0.72 -0.45 5.07 -55.14 -0.28 -0.73 16 13 C 0.59 2.14 7.75 -12.89 -0.10 2.04 16 14 O -0.52 -3.58 16.50 5.19 0.09 -3.50 16 15 C -0.26 -0.74 6.45 -36.79 -0.24 -0.98 16 16 C -0.05 -0.14 9.78 -40.44 -0.40 -0.53 16 17 C -0.08 -0.18 5.75 -106.45 -0.61 -0.79 16 18 C -0.10 -0.06 9.74 36.00 0.35 0.29 16 19 C -0.19 -0.30 5.65 -35.86 -0.20 -0.50 16 20 C -0.03 0.04 2.69 36.00 0.10 0.14 16 21 O -0.54 0.87 10.16 -35.23 -0.36 0.51 16 22 Si 0.67 -1.49 30.99 -169.99 -5.27 -6.75 16 23 S 0.17 0.19 19.36 -107.50 -2.08 -1.89 16 24 C -0.13 0.04 5.50 -26.73 -0.15 -0.11 16 25 C -0.11 0.06 5.14 -26.73 -0.14 -0.08 16 26 H 0.07 -0.08 8.14 -51.93 -0.42 -0.51 16 27 H 0.07 -0.08 8.14 -51.93 -0.42 -0.50 16 28 H 0.08 -0.20 8.14 -51.93 -0.42 -0.62 16 29 H 0.07 0.06 8.13 -51.93 -0.42 -0.36 16 30 H 0.07 0.05 8.13 -51.93 -0.42 -0.37 16 31 H 0.08 0.04 8.10 -51.93 -0.42 -0.38 16 32 H 0.08 -0.03 8.10 -51.93 -0.42 -0.45 16 33 H 0.08 -0.16 8.14 -51.93 -0.42 -0.58 16 34 H 0.07 -0.22 8.14 -51.93 -0.42 -0.65 16 35 H 0.40 -0.54 7.72 -40.82 -0.31 -0.85 16 36 H 0.16 0.39 8.06 -52.48 -0.42 -0.03 16 37 H 0.07 -0.01 8.14 -51.93 -0.42 -0.43 16 38 H 0.06 0.01 8.10 -51.93 -0.42 -0.41 16 39 H 0.10 0.06 5.48 -51.93 -0.28 -0.22 16 40 H 0.09 -0.25 7.96 -51.93 -0.41 -0.66 16 41 H 0.38 -2.54 8.74 45.56 0.40 -2.14 16 42 H -0.24 -0.24 7.11 56.52 0.40 0.16 16 43 H -0.24 0.10 7.11 56.52 0.40 0.50 16 44 H 0.07 -0.09 8.14 -51.93 -0.42 -0.51 16 45 H 0.08 0.12 8.14 -51.93 -0.42 -0.30 16 46 H 0.07 0.02 8.14 -51.93 -0.42 -0.40 16 47 H 0.08 -0.06 8.11 -51.93 -0.42 -0.48 16 LS Contribution 394.92 15.07 5.95 5.95 Total: 0.00 -8.98 394.92 -11.21 -20.18 By element: Atomic # 1 Polarization: -3.70 SS G_CDS: -7.38 Total: -11.08 kcal Atomic # 6 Polarization: 2.53 SS G_CDS: -1.18 Total: 1.35 kcal Atomic # 7 Polarization: -0.45 SS G_CDS: -0.28 Total: -0.73 kcal Atomic # 8 Polarization: -6.06 SS G_CDS: -0.96 Total: -7.03 kcal Atomic # 14 Polarization: -1.49 SS G_CDS: -5.27 Total: -6.75 kcal Atomic # 16 Polarization: 0.19 SS G_CDS: -2.08 Total: -1.89 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -8.98 -11.21 -20.18 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14589458_6739946.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -115.673 kcal (2) G-P(sol) polarization free energy of solvation -8.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.184 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds