Wall clock time and date at job start Sun Mar 7 2021 02:32:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.45198 * 109.47210 * 2 1 4 4 C 1.34228 * 117.00171 * 180.02562 * 3 2 1 5 5 O 1.20830 * 119.99496 * 359.97438 * 4 3 2 6 6 C 1.50696 * 120.00409 * 180.02562 * 4 3 2 7 7 H 1.09000 * 109.46647 * 299.99509 * 6 4 3 8 8 C 1.53002 * 109.47306 * 59.99165 * 6 4 3 9 9 C 1.52996 * 109.46972 * 180.02562 * 8 6 4 10 10 C 1.52997 * 109.47165 * 300.00293 * 9 8 6 11 11 H 1.09000 * 109.47140 * 299.99954 * 10 9 8 12 12 N 1.46506 * 109.47277 * 180.02562 * 10 9 8 13 13 C 1.34780 * 120.00088 * 84.99368 * 12 10 9 14 14 O 1.21644 * 119.99713 * 0.02562 * 13 12 10 15 15 C 1.47186 * 119.99956 * 180.02562 * 13 12 10 16 16 C 1.36006 * 123.46055 * 0.02877 * 15 13 12 17 17 S 1.70457 * 110.81382 * 179.97438 * 16 15 13 18 18 C 1.75508 * 92.44634 * 0.02562 * 17 16 15 19 19 C 1.50699 * 124.71126 * 179.97438 * 18 17 16 20 20 O 1.42899 * 109.46825 * 245.02079 * 19 18 17 21 21 Si 1.86301 * 109.47142 * 5.02032 * 19 18 17 22 22 C 1.32775 * 110.57313 * 359.73165 * 18 17 16 23 23 C 1.52999 * 109.47592 * 60.00300 * 10 9 8 24 24 C 1.52997 * 109.47238 * 179.97438 * 6 4 3 25 25 H 1.08999 * 109.47381 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.47207 * 300.00047 * 1 2 3 27 27 H 1.08999 * 109.47067 * 59.99970 * 1 2 3 28 28 H 1.09005 * 109.46935 * 239.99510 * 2 1 3 29 29 H 1.08999 * 109.47067 * 120.00030 * 2 1 3 30 30 H 1.08992 * 109.46974 * 300.00616 * 8 6 4 31 31 H 1.08996 * 109.46550 * 60.00722 * 8 6 4 32 32 H 1.09000 * 109.47054 * 60.00300 * 9 8 6 33 33 H 1.09001 * 109.46997 * 180.02562 * 9 8 6 34 34 H 0.97000 * 120.00161 * 265.00272 * 12 10 9 35 35 H 1.07995 * 124.59505 * 359.97288 * 16 15 13 36 36 H 1.08994 * 109.47003 * 125.02322 * 19 18 17 37 37 H 0.96699 * 114.00450 * 59.99868 * 20 19 18 38 38 H 1.48495 * 109.99900 * 180.02562 * 21 19 18 39 39 H 1.48498 * 109.99731 * 301.32132 * 21 19 18 40 40 H 1.07996 * 123.45519 * 180.22934 * 22 18 17 41 41 H 1.08993 * 109.47839 * 180.02562 * 23 10 9 42 42 H 1.09000 * 109.47160 * 59.99666 * 23 10 9 43 43 H 1.09001 * 109.46922 * 59.99800 * 24 6 4 44 44 H 1.09000 * 109.47140 * 299.99500 * 24 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3447 1.5448 -0.0005 5 8 4.0807 0.5865 -0.0005 6 6 3.9208 2.9373 0.0000 7 1 3.5844 3.4699 -0.8896 8 6 3.4497 3.6837 1.2498 9 6 4.0341 5.0976 1.2500 10 6 5.5620 5.0180 1.2490 11 1 5.8986 4.4856 2.1386 12 7 6.1216 6.3720 1.2498 13 6 6.2856 7.0327 2.4130 14 8 5.9694 6.5047 3.4622 15 6 6.8473 8.3932 2.4137 16 6 7.2235 9.0497 1.2835 17 16 7.8280 10.5994 1.6561 18 6 7.5727 10.3677 3.3770 19 6 7.8958 11.3884 4.4375 20 8 8.9374 10.8882 5.2783 21 14 8.4568 12.9694 3.6274 22 6 7.0506 9.1701 3.6141 23 6 6.0331 4.2717 -0.0008 24 6 5.4486 2.8572 -0.0001 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 2.3613 3.7407 1.2503 31 1 3.7861 3.1511 2.1393 32 1 3.6974 5.6300 0.3604 33 1 3.6989 5.6292 2.1406 34 1 6.3740 6.7930 0.4131 35 1 7.1494 8.6442 0.2854 36 1 7.0067 11.5830 5.0373 37 1 9.7608 10.6925 4.8104 38 1 8.7791 13.9840 4.6627 39 1 9.6496 12.7111 2.7814 40 1 6.8061 8.8125 4.6034 41 1 7.1215 4.2146 -0.0013 42 1 5.6964 4.8041 -0.8904 43 1 5.7845 2.3254 -0.8904 44 1 5.7846 2.3247 0.8897 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14589458_6894386.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 02:32:42 Heat of formation + Delta-G solvation = -134.298241 kcal Electronic energy + Delta-G solvation = -26708.510273 eV Core-core repulsion = 22718.518336 eV Total energy + Delta-G solvation = -3989.991937 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 340.122 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.89223 -41.15041 -39.39179 -38.69297 -37.69966 -37.16249 -35.42012 -32.82173 -32.10874 -31.84745 -30.58171 -26.95279 -26.29607 -24.89721 -23.85543 -23.57516 -22.19391 -21.78314 -21.11371 -20.30478 -19.02491 -18.74420 -18.08438 -17.89147 -17.66884 -17.54896 -16.93559 -16.44118 -16.13159 -15.87783 -15.53331 -15.29710 -15.12549 -14.92130 -14.56275 -14.52643 -14.10552 -14.04143 -13.88130 -13.65060 -13.57639 -13.43774 -13.25543 -12.95584 -12.81578 -12.62074 -12.52254 -12.43742 -12.39110 -12.20663 -11.83726 -11.63635 -11.54832 -11.47056 -11.35006 -10.98778 -10.73418 -10.19870 -9.97664 -9.43615 -5.03102 -0.31874 0.41125 0.71258 0.83463 1.08305 1.23165 1.56057 1.61899 1.91717 2.09054 2.28207 3.31038 3.45000 3.53406 3.60855 3.63446 3.89288 3.93105 3.95859 4.00670 4.02617 4.07481 4.16489 4.28193 4.29353 4.30741 4.33891 4.41758 4.50453 4.60422 4.73115 4.74726 4.81900 4.87789 4.91963 5.01825 5.02936 5.07350 5.08847 5.14061 5.17632 5.24633 5.27920 5.42142 5.48102 6.40811 6.49832 6.64506 7.18065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.053 3.947 3 O -0.360 6.360 4 C 0.463 3.537 5 O -0.542 6.542 6 C -0.074 4.074 7 H 0.140 0.860 8 C -0.103 4.103 9 C -0.119 4.119 10 C 0.142 3.858 11 H 0.062 0.938 12 N -0.705 5.705 13 C 0.575 3.425 14 O -0.585 6.585 15 C -0.183 4.183 16 C -0.187 4.187 17 S 0.249 5.751 18 C -0.247 4.247 19 C -0.048 4.048 20 O -0.546 6.546 21 Si 0.730 3.270 22 C -0.076 4.076 23 C -0.113 4.113 24 C -0.099 4.099 25 H 0.095 0.905 26 H 0.067 0.933 27 H 0.071 0.929 28 H 0.069 0.931 29 H 0.064 0.936 30 H 0.087 0.913 31 H 0.054 0.946 32 H 0.094 0.906 33 H 0.054 0.946 34 H 0.416 0.584 35 H 0.207 0.793 36 H 0.128 0.872 37 H 0.388 0.612 38 H -0.278 1.278 39 H -0.249 1.249 40 H 0.130 0.870 41 H 0.083 0.917 42 H 0.103 0.897 43 H 0.081 0.919 44 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.802 4.998 -8.772 10.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.020 4.020 3 O -0.276 6.276 4 C 0.308 3.692 5 O -0.431 6.431 6 C -0.092 4.092 7 H 0.158 0.842 8 C -0.141 4.141 9 C -0.158 4.158 10 C 0.038 3.962 11 H 0.080 0.920 12 N -0.356 5.356 13 C 0.362 3.638 14 O -0.466 6.466 15 C -0.201 4.201 16 C -0.326 4.326 17 S 0.515 5.485 18 C -0.363 4.363 19 C -0.159 4.159 20 O -0.354 6.354 21 Si 0.631 3.369 22 C -0.106 4.106 23 C -0.150 4.150 24 C -0.138 4.138 25 H 0.114 0.886 26 H 0.086 0.914 27 H 0.090 0.910 28 H 0.087 0.913 29 H 0.082 0.918 30 H 0.106 0.894 31 H 0.073 0.927 32 H 0.113 0.887 33 H 0.072 0.928 34 H 0.254 0.746 35 H 0.224 0.776 36 H 0.146 0.854 37 H 0.238 0.762 38 H -0.203 1.203 39 H -0.174 1.174 40 H 0.148 0.852 41 H 0.102 0.898 42 H 0.121 0.879 43 H 0.099 0.901 44 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -1.074 6.132 -8.560 10.584 hybrid contribution 0.355 -2.513 1.430 2.913 sum -0.719 3.619 -7.130 8.028 Atomic orbital electron populations 1.21821 0.90649 1.04241 1.03774 1.23238 0.96956 0.79469 1.02359 1.86515 1.24331 1.33340 1.83462 1.24364 0.80536 0.93386 0.70962 1.90671 1.61152 1.44518 1.46798 1.21261 0.96556 0.88205 1.03210 0.84236 1.21426 1.02008 0.95221 0.95443 1.21839 0.94343 0.96237 1.03367 1.21045 0.93458 0.82026 0.99707 0.92017 1.45732 1.64392 1.16757 1.08761 1.17923 0.77068 0.85066 0.83726 1.90802 1.52880 1.69681 1.33225 1.20101 1.10271 0.96124 0.93584 1.26194 1.02226 1.00692 1.03439 1.83010 1.57485 1.10961 0.97007 1.24812 1.10844 1.00769 0.99915 1.24742 0.94761 1.02379 0.93985 1.86614 1.25222 1.85876 1.37698 0.94407 0.86118 0.74611 0.81789 1.21000 0.98094 0.92911 0.98557 1.21754 1.01761 0.94286 0.97247 1.21374 0.91561 0.97316 1.03500 0.88632 0.91373 0.91024 0.91291 0.91791 0.89414 0.92724 0.88737 0.92766 0.74583 0.77569 0.85425 0.76245 1.20329 1.17397 0.85203 0.89828 0.87898 0.90062 0.92553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.45 10.29 71.98 0.74 1.19 16 2 C 0.05 0.09 6.19 71.98 0.45 0.54 16 3 O -0.36 -1.39 10.12 -51.40 -0.52 -1.91 16 4 C 0.46 2.21 7.26 71.23 0.52 2.73 16 5 O -0.54 -6.19 15.73 21.95 0.35 -5.84 16 6 C -0.07 0.16 2.63 -11.54 -0.03 0.13 16 7 H 0.14 -1.06 8.14 -2.39 -0.02 -1.08 16 8 C -0.10 0.15 5.13 30.59 0.16 0.31 16 9 C -0.12 0.26 5.49 30.59 0.17 0.43 16 10 C 0.14 -0.22 2.45 44.99 0.11 -0.11 16 11 H 0.06 0.32 7.57 -2.39 -0.02 0.31 16 12 N -0.70 1.88 5.05 -446.01 -2.25 -0.38 16 13 C 0.58 3.19 7.76 86.59 0.67 3.86 16 14 O -0.58 -9.11 16.46 -4.17 -0.07 -9.17 16 15 C -0.18 -0.33 5.98 -19.87 -0.12 -0.45 16 16 C -0.19 1.12 10.38 67.30 0.70 1.82 16 17 S 0.25 -1.53 20.20 -56.49 -1.14 -2.67 16 18 C -0.25 0.11 5.65 24.51 0.14 0.25 16 19 C -0.05 0.04 2.94 71.24 0.21 0.25 16 20 O -0.55 -1.69 12.88 -148.98 -1.92 -3.61 16 21 Si 0.73 -2.76 30.92 68.60 2.12 -0.64 16 22 C -0.08 -0.34 9.95 22.67 0.23 -0.11 16 23 C -0.11 0.75 5.40 30.61 0.17 0.92 16 24 C -0.10 0.22 4.50 30.61 0.14 0.35 16 25 H 0.10 -0.56 8.14 -2.39 -0.02 -0.58 16 26 H 0.07 -0.19 8.14 -2.39 -0.02 -0.21 16 27 H 0.07 -0.25 8.14 -2.39 -0.02 -0.27 16 28 H 0.07 0.13 8.13 -2.38 -0.02 0.11 16 29 H 0.06 0.18 8.13 -2.39 -0.02 0.16 16 30 H 0.09 -0.19 8.11 -2.39 -0.02 -0.21 16 31 H 0.05 0.12 8.14 -2.39 -0.02 0.10 16 32 H 0.09 -0.64 8.14 -2.39 -0.02 -0.66 16 33 H 0.05 0.17 8.14 -2.39 -0.02 0.15 16 34 H 0.42 -4.29 7.10 -92.71 -0.66 -4.95 16 35 H 0.21 -2.90 7.01 -2.91 -0.02 -2.92 16 36 H 0.13 -0.19 7.96 -2.39 -0.02 -0.21 16 37 H 0.39 -1.25 8.70 -74.06 -0.64 -1.89 16 38 H -0.28 -0.95 7.11 99.48 0.71 -0.24 16 39 H -0.25 0.50 7.11 99.48 0.71 1.21 16 40 H 0.13 1.14 8.06 -2.91 -0.02 1.12 16 41 H 0.08 -0.58 8.14 -2.39 -0.02 -0.60 16 42 H 0.10 -1.22 8.14 -2.39 -0.02 -1.24 16 43 H 0.08 -0.15 8.10 -2.39 -0.02 -0.17 16 44 H 0.06 0.13 8.10 -2.39 -0.02 0.11 16 Total: 0.00 -24.63 377.83 0.56 -24.07 By element: Atomic # 1 Polarization: -11.72 SS G_CDS: -0.24 Total: -11.97 kcal Atomic # 6 Polarization: 7.88 SS G_CDS: 4.24 Total: 12.12 kcal Atomic # 7 Polarization: 1.88 SS G_CDS: -2.25 Total: -0.38 kcal Atomic # 8 Polarization: -18.38 SS G_CDS: -2.16 Total: -20.54 kcal Atomic # 14 Polarization: -2.76 SS G_CDS: 2.12 Total: -0.64 kcal Atomic # 16 Polarization: -1.53 SS G_CDS: -1.14 Total: -2.67 kcal Total: -24.63 0.56 -24.07 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14589458_6894386.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -110.227 kcal (2) G-P(sol) polarization free energy of solvation -24.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.860 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.071 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds