Wall clock time and date at job start Sun Mar 7 2021 02:32:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.45199 * 109.46931 * 2 1 4 4 C 1.34229 * 116.99319 * 179.97438 * 3 2 1 5 5 O 1.20827 * 120.00659 * 0.27965 * 4 3 2 6 6 C 1.50707 * 119.99771 * 180.02562 * 4 3 2 7 7 H 1.08998 * 109.46872 * 59.99888 * 6 4 3 8 8 C 1.52996 * 109.47147 * 180.02562 * 6 4 3 9 9 C 1.52997 * 109.47198 * 180.02562 * 8 6 4 10 10 C 1.53005 * 109.47334 * 300.00258 * 9 8 6 11 11 H 1.09002 * 109.46484 * 299.99982 * 10 9 8 12 12 N 1.46492 * 109.47449 * 179.97438 * 10 9 8 13 13 C 1.34772 * 120.00394 * 155.00050 * 12 10 9 14 14 O 1.21551 * 119.99895 * 359.97438 * 13 12 10 15 15 C 1.47850 * 120.00233 * 180.02562 * 13 12 10 16 16 C 1.39555 * 120.14191 * 174.01864 * 15 13 12 17 17 C 1.50698 * 120.07757 * 359.94989 * 16 15 13 18 18 C 1.37976 * 119.85052 * 179.97438 * 16 15 13 19 19 C 1.38339 * 120.14558 * 0.02562 * 18 16 15 20 20 C 1.50705 * 119.85126 * 179.97438 * 19 18 16 21 21 C 1.38379 * 120.29230 * 359.97438 * 19 18 16 22 22 C 1.50695 * 119.92722 * 179.97438 * 21 19 18 23 23 O 1.42903 * 109.46955 * 74.99985 * 22 21 19 24 24 Si 1.86300 * 109.47353 * 194.99866 * 22 21 19 25 25 C 1.37937 * 120.14280 * 359.74030 * 21 19 18 26 26 C 1.52998 * 109.47008 * 59.99395 * 10 9 8 27 27 C 1.52997 * 109.47567 * 300.00462 * 26 10 9 28 28 H 1.08998 * 109.47022 * 59.99807 * 1 2 3 29 29 H 1.09003 * 109.47161 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47170 * 299.99628 * 1 2 3 31 31 H 1.08999 * 109.46523 * 239.99990 * 2 1 3 32 32 H 1.09002 * 109.46825 * 120.00666 * 2 1 3 33 33 H 1.09001 * 109.47112 * 299.99927 * 8 6 4 34 34 H 1.08998 * 109.47383 * 60.00131 * 8 6 4 35 35 H 1.09002 * 109.47320 * 59.99728 * 9 8 6 36 36 H 1.08999 * 109.47597 * 179.97438 * 9 8 6 37 37 H 0.97009 * 120.00024 * 334.99897 * 12 10 9 38 38 H 1.09006 * 109.46807 * 83.41040 * 17 16 15 39 39 H 1.09005 * 109.47736 * 203.41178 * 17 16 15 40 40 H 1.09008 * 109.47142 * 323.41450 * 17 16 15 41 41 H 1.08004 * 119.93061 * 179.97438 * 18 16 15 42 42 H 1.08999 * 109.46660 * 90.00387 * 20 19 18 43 43 H 1.08999 * 109.47106 * 209.99726 * 20 19 18 44 44 H 1.08992 * 109.47502 * 330.00577 * 20 19 18 45 45 H 1.09000 * 109.47363 * 315.00666 * 22 21 19 46 46 H 0.96700 * 113.99804 * 60.00306 * 23 22 21 47 47 H 1.48502 * 109.99661 * 58.68489 * 24 22 21 48 48 H 1.48490 * 110.00217 * 180.02562 * 24 22 21 49 49 H 1.07997 * 120.07262 * 180.27662 * 25 21 19 50 50 H 1.09002 * 109.47019 * 60.00914 * 26 10 9 51 51 H 1.09001 * 109.46931 * 180.02562 * 26 10 9 52 52 H 1.08998 * 109.46846 * 300.00193 * 27 26 10 53 53 H 1.08998 * 109.47611 * 179.97438 * 27 26 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5447 0.0005 5 8 4.0808 0.5865 -0.0041 6 6 3.9208 2.9373 0.0012 7 1 3.5845 3.4692 0.8912 8 6 5.4487 2.8572 0.0010 9 6 6.0335 4.2710 0.0023 10 6 5.5619 5.0192 -1.2462 11 1 5.8979 4.4878 -2.1367 12 7 6.1214 6.3730 -1.2447 13 6 6.2850 7.0360 -2.4067 14 8 5.9686 6.5103 -3.4560 15 6 6.8502 8.4022 -2.4052 16 6 7.1371 9.0432 -3.6111 17 6 6.8726 8.3440 -4.9196 18 6 7.6639 10.3184 -3.6027 19 6 7.9083 10.9612 -2.4024 20 6 8.4844 12.3538 -2.4009 21 6 7.6260 10.3312 -1.2031 22 6 7.8960 11.0389 0.0997 23 8 6.8972 12.0379 0.3149 24 14 7.8529 9.8067 1.4964 25 6 7.0936 9.0587 -1.1976 26 6 4.0340 5.0992 -1.2461 27 6 3.4492 3.6854 -1.2474 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8932 -0.5138 -0.8900 32 1 1.8933 -0.5140 0.8900 33 1 5.7846 2.3246 0.8908 34 1 5.7846 2.3255 -0.8892 35 1 5.6976 4.8024 0.8928 36 1 7.1220 4.2140 0.0027 37 1 6.3742 6.7925 -0.4073 38 1 5.8253 8.4707 -5.1941 39 1 7.5061 8.7736 -5.6958 40 1 7.0950 7.2820 -4.8156 41 1 7.8868 10.8155 -4.5353 42 1 7.6738 13.0823 -2.4176 43 1 9.0840 12.4980 -1.5021 44 1 9.1119 12.4883 -3.2818 45 1 8.8783 11.5098 0.0607 46 1 5.9962 11.6898 0.3607 47 1 8.8657 8.7448 1.2682 48 1 8.1171 10.4922 2.7868 49 1 6.8696 8.5698 -0.2610 50 1 3.6981 5.6306 -0.3556 51 1 3.6981 5.6318 -2.1358 52 1 3.7851 3.1541 -2.1378 53 1 2.3607 3.7425 -1.2468 There are 68 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 68 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14589458_9599494.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 02:32:52 Heat of formation + Delta-G solvation = -141.892519 kcal Electronic energy + Delta-G solvation = -33033.115881 eV Core-core repulsion = 28642.567147 eV Total energy + Delta-G solvation = -4390.548734 eV No. of doubly occupied orbitals = 68 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 362.197 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.91819 -41.59707 -40.29257 -39.00566 -37.71927 -37.50610 -35.55259 -34.38239 -33.46022 -32.68353 -31.79252 -30.96464 -29.19363 -28.43291 -25.78629 -25.30271 -23.87924 -23.78975 -23.51425 -22.45778 -21.63277 -21.26427 -20.61051 -19.01184 -18.69121 -17.76690 -17.64997 -17.44921 -17.41261 -16.58434 -16.39246 -16.27935 -16.17962 -15.56987 -15.51703 -15.23226 -14.95688 -14.84577 -14.64425 -14.55347 -14.47014 -14.10479 -14.05754 -13.91337 -13.76969 -13.50504 -13.37741 -13.21291 -13.06724 -12.93438 -12.87519 -12.65387 -12.64056 -12.50242 -12.48579 -12.30985 -12.14627 -12.11867 -11.80859 -11.59256 -11.50693 -11.42517 -11.26873 -10.66118 -10.39835 -10.11667 -9.87487 -9.58996 -5.04367 -0.23031 0.18869 1.11891 1.30762 1.64602 1.65174 1.78858 1.99674 2.09699 2.67782 3.46143 3.48131 3.53610 3.59957 3.67658 3.69042 3.76349 3.82598 3.95235 3.99246 4.04552 4.12358 4.15696 4.20158 4.23185 4.32428 4.34865 4.37955 4.46356 4.47875 4.52173 4.57564 4.65990 4.69167 4.77432 4.79213 4.80722 4.85470 4.89727 4.90466 4.98661 5.04991 5.08620 5.11919 5.12994 5.14786 5.18152 5.24524 5.30347 5.34228 5.45459 5.49598 5.51486 5.57148 5.81608 6.52674 6.67893 6.79704 7.21453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.053 3.947 3 O -0.359 6.359 4 C 0.462 3.538 5 O -0.543 6.543 6 C -0.074 4.074 7 H 0.140 0.860 8 C -0.099 4.099 9 C -0.117 4.117 10 C 0.143 3.857 11 H 0.065 0.935 12 N -0.710 5.710 13 C 0.558 3.442 14 O -0.562 6.562 15 C -0.157 4.157 16 C -0.027 4.027 17 C -0.118 4.118 18 C -0.138 4.138 19 C -0.034 4.034 20 C -0.119 4.119 21 C -0.140 4.140 22 C -0.072 4.072 23 O -0.550 6.550 24 Si 0.765 3.235 25 C -0.062 4.062 26 C -0.119 4.119 27 C -0.102 4.102 28 H 0.068 0.932 29 H 0.094 0.906 30 H 0.071 0.929 31 H 0.063 0.937 32 H 0.068 0.932 33 H 0.078 0.922 34 H 0.055 0.945 35 H 0.104 0.896 36 H 0.081 0.919 37 H 0.413 0.587 38 H 0.071 0.929 39 H 0.070 0.930 40 H 0.078 0.922 41 H 0.142 0.858 42 H 0.081 0.919 43 H 0.071 0.929 44 H 0.075 0.925 45 H 0.110 0.890 46 H 0.395 0.605 47 H -0.278 1.278 48 H -0.298 1.298 49 H 0.156 0.844 50 H 0.096 0.904 51 H 0.057 0.943 52 H 0.054 0.946 53 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.135 2.444 4.141 5.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.020 4.020 3 O -0.276 6.276 4 C 0.307 3.693 5 O -0.432 6.432 6 C -0.093 4.093 7 H 0.158 0.842 8 C -0.137 4.137 9 C -0.155 4.155 10 C 0.039 3.961 11 H 0.084 0.916 12 N -0.362 5.362 13 C 0.347 3.653 14 O -0.442 6.442 15 C -0.160 4.160 16 C -0.028 4.028 17 C -0.174 4.174 18 C -0.156 4.156 19 C -0.035 4.035 20 C -0.175 4.175 21 C -0.140 4.140 22 C -0.182 4.182 23 O -0.358 6.358 24 Si 0.671 3.329 25 C -0.080 4.080 26 C -0.158 4.158 27 C -0.141 4.141 28 H 0.087 0.913 29 H 0.113 0.887 30 H 0.090 0.910 31 H 0.082 0.918 32 H 0.086 0.914 33 H 0.097 0.903 34 H 0.074 0.926 35 H 0.123 0.877 36 H 0.100 0.900 37 H 0.251 0.749 38 H 0.089 0.911 39 H 0.089 0.911 40 H 0.096 0.904 41 H 0.160 0.840 42 H 0.100 0.900 43 H 0.090 0.910 44 H 0.094 0.906 45 H 0.127 0.873 46 H 0.245 0.755 47 H -0.204 1.204 48 H -0.226 1.226 49 H 0.173 0.827 50 H 0.114 0.886 51 H 0.076 0.924 52 H 0.073 0.927 53 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -2.221 1.748 4.047 4.937 hybrid contribution 0.640 0.046 -0.452 0.785 sum -1.581 1.794 3.595 4.318 Atomic orbital electron populations 1.21820 0.90678 1.04202 1.03786 1.23226 0.96933 0.79534 1.02312 1.86517 1.24366 1.33247 1.83475 1.24411 0.80506 0.93455 0.70924 1.90671 1.61153 1.44587 1.46832 1.21274 0.96474 0.88118 1.03402 0.84193 1.21350 0.91613 0.97325 1.03397 1.21784 1.01698 0.94367 0.97646 1.21043 0.93547 0.81874 0.99675 0.91639 1.45864 1.64521 1.16894 1.08933 1.18386 0.77573 0.85468 0.83879 1.90744 1.51686 1.69782 1.32021 1.19694 1.07161 0.94912 0.94236 1.20213 0.93662 0.93823 0.95089 1.21019 1.02078 1.01424 0.92913 1.21161 1.01466 0.94193 0.98766 1.20214 0.94389 0.96581 0.92266 1.20924 1.01235 0.92007 1.03368 1.20197 1.02839 0.95082 0.95885 1.25181 0.94689 0.98342 0.99961 1.86491 1.19760 1.34761 1.94821 0.94194 0.88181 0.76760 0.73803 1.21184 0.96129 0.93799 0.96893 1.21847 0.94143 0.96100 1.03672 1.21428 1.01975 0.95348 0.95311 0.91332 0.88707 0.91035 0.91807 0.91372 0.90292 0.92569 0.87721 0.90040 0.74866 0.91089 0.91138 0.90374 0.84020 0.90016 0.91025 0.90577 0.87308 0.75549 1.20420 1.22553 0.82717 0.88552 0.92374 0.92714 0.89458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.52 10.29 71.98 0.74 1.27 16 2 C 0.05 0.07 6.19 71.98 0.45 0.51 16 3 O -0.36 -1.12 10.12 -51.40 -0.52 -1.64 16 4 C 0.46 1.85 7.26 71.24 0.52 2.37 16 5 O -0.54 -5.88 15.73 21.96 0.35 -5.53 16 6 C -0.07 0.24 2.63 -11.54 -0.03 0.21 16 7 H 0.14 -1.21 8.14 -2.39 -0.02 -1.23 16 8 C -0.10 0.30 4.49 30.59 0.14 0.43 16 9 C -0.12 0.88 5.39 30.59 0.16 1.04 16 10 C 0.14 -0.47 2.45 44.99 0.11 -0.36 16 11 H 0.07 0.18 7.58 -2.39 -0.02 0.17 16 12 N -0.71 2.77 5.03 -445.42 -2.24 0.53 16 13 C 0.56 1.76 7.67 86.79 0.67 2.43 16 14 O -0.56 -5.84 13.00 -3.88 -0.05 -5.89 16 15 C -0.16 -0.25 5.87 -20.09 -0.12 -0.37 16 16 C -0.03 -0.09 5.91 -19.61 -0.12 -0.21 16 17 C -0.12 -0.53 8.73 71.24 0.62 0.09 16 18 C -0.14 -0.16 9.31 22.23 0.21 0.05 16 19 C -0.03 0.00 5.89 -19.81 -0.12 -0.12 16 20 C -0.12 0.25 9.53 71.24 0.68 0.93 16 21 C -0.14 0.29 5.25 -19.90 -0.10 0.18 16 22 C -0.07 0.26 2.04 71.23 0.15 0.40 16 23 O -0.55 1.71 12.80 -148.98 -1.91 -0.20 16 24 Si 0.77 -4.55 29.92 68.60 2.05 -2.49 16 25 C -0.06 0.22 8.13 22.52 0.18 0.41 16 26 C -0.12 0.51 5.49 30.59 0.17 0.68 16 27 C -0.10 0.31 5.14 30.59 0.16 0.47 16 28 H 0.07 -0.23 8.14 -2.39 -0.02 -0.25 16 29 H 0.09 -0.59 8.14 -2.39 -0.02 -0.61 16 30 H 0.07 -0.28 8.14 -2.39 -0.02 -0.30 16 31 H 0.06 0.15 8.13 -2.39 -0.02 0.13 16 32 H 0.07 0.10 8.14 -2.39 -0.02 0.08 16 33 H 0.08 -0.19 8.10 -2.39 -0.02 -0.20 16 34 H 0.06 0.08 8.10 -2.39 -0.02 0.06 16 35 H 0.10 -1.34 8.14 -2.39 -0.02 -1.36 16 36 H 0.08 -0.59 8.14 -2.39 -0.02 -0.61 16 37 H 0.41 -4.32 6.68 -92.70 -0.62 -4.93 16 38 H 0.07 0.38 8.14 -2.38 -0.02 0.36 16 39 H 0.07 0.10 8.04 -2.38 -0.02 0.08 16 40 H 0.08 0.67 5.85 -2.38 -0.01 0.65 16 41 H 0.14 -0.25 8.06 -2.91 -0.02 -0.27 16 42 H 0.08 -0.16 8.14 -2.39 -0.02 -0.18 16 43 H 0.07 -0.14 6.22 -2.39 -0.01 -0.16 16 44 H 0.08 -0.28 8.08 -2.39 -0.02 -0.30 16 45 H 0.11 -0.25 6.48 -2.39 -0.02 -0.27 16 46 H 0.39 -4.30 8.70 -74.06 -0.64 -4.95 16 47 H -0.28 0.43 7.11 99.48 0.71 1.13 16 48 H -0.30 -0.64 7.11 99.48 0.71 0.07 16 49 H 0.16 -1.66 3.53 -2.91 -0.01 -1.67 16 50 H 0.10 -0.86 8.14 -2.39 -0.02 -0.88 16 51 H 0.06 0.02 8.14 -2.39 -0.02 0.01 16 52 H 0.05 0.03 8.14 -2.39 -0.02 0.01 16 53 H 0.09 -0.32 8.11 -2.39 -0.02 -0.34 16 Total: 0.00 -22.42 417.83 1.84 -20.57 By element: Atomic # 1 Polarization: -15.47 SS G_CDS: -0.29 Total: -15.77 kcal Atomic # 6 Polarization: 5.96 SS G_CDS: 4.46 Total: 10.42 kcal Atomic # 7 Polarization: 2.77 SS G_CDS: -2.24 Total: 0.53 kcal Atomic # 8 Polarization: -11.13 SS G_CDS: -2.13 Total: -13.27 kcal Atomic # 14 Polarization: -4.55 SS G_CDS: 2.05 Total: -2.49 kcal Total: -22.42 1.84 -20.57 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14589458_9599494.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -121.319 kcal (2) G-P(sol) polarization free energy of solvation -22.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.574 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds