Wall clock time and date at job start Sun Mar 7 2021 00:05:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42899 * 109.46792 * 2 1 4 4 C 1.35901 * 117.00286 * 84.84436 * 3 2 1 5 5 C 1.38724 * 120.05586 * 354.62245 * 4 3 2 6 6 C 1.38150 * 119.94624 * 179.97438 * 5 4 3 7 7 C 1.38263 * 120.05304 * 359.97438 * 6 5 4 8 8 C 1.50702 * 119.94410 * 180.02562 * 7 6 5 9 9 O 1.42906 * 109.46703 * 299.99971 * 8 7 6 10 10 Si 1.86300 * 109.47325 * 180.02562 * 8 7 6 11 11 C 1.38270 * 120.11378 * 0.27390 * 7 6 5 12 12 C 1.38150 * 120.05063 * 359.45462 * 11 7 6 13 13 C 1.50692 * 109.47173 * 239.99951 * 2 1 3 14 14 O 1.21280 * 120.00262 * 120.00037 * 13 2 1 15 15 N 1.34779 * 120.00213 * 299.99398 * 13 2 1 16 16 C 1.46496 * 120.00299 * 179.97438 * 15 13 2 17 17 H 1.09003 * 112.85114 * 336.20052 * 16 15 13 18 18 C 1.53790 * 113.61273 * 107.50522 * 16 15 13 19 19 C 1.53783 * 87.07785 * 139.98125 * 18 16 15 20 20 H 1.09002 * 113.68880 * 89.13243 * 19 18 16 21 21 C 1.53001 * 113.61205 * 220.01477 * 19 18 16 22 22 N 1.46497 * 109.47602 * 272.50293 * 21 19 18 23 23 C 1.34420 * 126.82617 * 124.99859 * 22 21 19 24 24 N 1.30830 * 108.07908 * 179.97438 * 23 22 21 25 25 C 1.33237 * 109.82937 * 0.02562 * 24 23 22 26 26 N 1.30721 * 108.94863 * 359.75415 * 25 24 23 27 27 C 1.53773 * 87.08353 * 334.56919 * 19 18 16 28 28 H 1.09003 * 109.47036 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.46843 * 299.99667 * 1 2 3 30 30 H 1.09000 * 109.47423 * 60.00449 * 1 2 3 31 31 H 1.09000 * 109.47423 * 119.99551 * 2 1 3 32 32 H 1.08003 * 120.02817 * 359.95640 * 5 4 3 33 33 H 1.07998 * 119.96857 * 179.97438 * 6 5 4 34 34 H 1.08997 * 109.47300 * 59.99937 * 8 7 6 35 35 H 0.96702 * 113.99896 * 300.00061 * 9 8 7 36 36 H 1.48503 * 109.99972 * 58.67487 * 10 8 7 37 37 H 1.48498 * 110.00323 * 179.97438 * 10 8 7 38 38 H 1.07994 * 119.97283 * 179.72797 * 11 7 6 39 39 H 1.07997 * 120.02350 * 180.27496 * 12 11 7 40 40 H 0.97000 * 119.99419 * 0.02562 * 15 13 2 41 41 H 1.08993 * 113.61330 * 254.52975 * 18 16 15 42 42 H 1.08997 * 113.61200 * 25.43418 * 18 16 15 43 43 H 1.09006 * 109.47032 * 32.50599 * 21 19 18 44 44 H 1.09005 * 109.46434 * 152.49732 * 21 19 18 45 45 H 1.08002 * 125.95922 * 0.02562 * 23 22 21 46 46 H 1.08000 * 125.53117 * 179.97438 * 25 24 23 47 47 H 1.09003 * 113.61484 * 270.88539 * 27 19 18 48 48 H 1.09005 * 113.61501 * 139.98181 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 2.1093 1.9653 1.2060 5 6 1.6554 1.3307 2.3530 6 6 1.7617 1.9608 3.5778 7 6 2.3206 3.2227 3.6610 8 6 2.4359 3.9076 4.9985 9 8 1.1339 4.0676 5.5654 10 14 3.2245 5.5804 4.7737 11 6 2.7691 3.8596 2.5186 12 6 2.6701 3.2313 1.2922 13 6 2.0323 -0.7104 -1.2304 14 8 2.7296 -0.1210 -2.0287 15 7 1.7069 -2.0008 -1.4436 16 6 2.1947 -2.6912 -2.6400 17 1 2.4376 -2.0078 -3.4537 18 6 3.2978 -3.7226 -2.3493 19 6 2.6139 -4.6295 -3.3860 20 1 2.9718 -4.4779 -4.4044 21 6 2.5794 -6.1047 -2.9819 22 7 3.8105 -6.7621 -3.4273 23 6 4.6743 -7.4557 -2.6660 24 7 5.6422 -7.8823 -3.4360 25 6 5.4323 -7.4823 -4.6894 26 7 4.3201 -6.7969 -4.7356 27 6 1.3119 -3.8740 -3.0718 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5137 -0.8900 31 1 1.8934 -0.5137 0.8900 32 1 1.2189 0.3449 2.2885 33 1 1.4081 1.4672 4.4709 34 1 3.0505 3.3024 5.6648 35 1 0.5318 4.5970 5.0247 36 1 2.4124 6.4038 3.8421 37 1 3.3434 6.2664 6.0853 38 1 3.2012 4.8470 2.5857 39 1 3.0246 3.7273 0.4008 40 1 1.1489 -2.4720 -0.8052 41 1 4.2932 -3.3929 -2.6467 42 1 3.2679 -4.1196 -1.3346 43 1 2.4977 -6.1826 -1.8977 44 1 1.7203 -6.5887 -3.4467 45 1 4.5845 -7.6311 -1.6041 46 1 6.0747 -7.6933 -5.5315 47 1 0.7390 -4.3124 -2.2546 48 1 0.7041 -3.6665 -3.9526 There are 66 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 66 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14644236_10157680.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 00:05:28 Heat of formation + Delta-G solvation = 50.661057 kcal Electronic energy + Delta-G solvation = -30648.586238 eV Core-core repulsion = 26287.877052 eV Total energy + Delta-G solvation = -4360.709187 eV No. of doubly occupied orbitals = 66 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 359.168 amu Computer time = 1.44 seconds Orbital eigenvalues (eV) -42.97636 -41.86723 -41.00761 -39.82154 -38.91080 -37.27370 -35.57356 -34.37425 -32.92115 -32.15608 -32.05978 -31.37998 -29.02610 -26.78908 -26.71730 -25.78047 -24.51212 -23.86135 -22.93065 -22.65420 -22.11085 -21.55084 -20.49866 -19.50921 -18.63342 -18.40677 -18.16987 -17.50716 -16.88939 -16.86099 -16.52293 -16.33982 -16.30894 -16.14343 -15.84965 -15.61591 -15.51122 -15.21069 -15.00575 -14.77235 -14.48783 -14.32631 -14.26275 -13.71308 -13.62461 -13.46813 -13.38508 -13.34011 -13.22322 -12.88826 -12.70739 -12.40762 -12.27496 -12.19980 -12.00409 -11.88317 -11.60940 -11.54452 -10.99449 -10.92350 -10.78352 -10.60308 -10.51133 -10.15829 -10.04494 -9.23093 -4.92067 0.23963 0.32099 0.71291 1.32595 1.35558 1.46461 1.52634 1.59561 1.95024 2.02096 2.48619 2.64214 3.34870 3.41500 3.44044 3.46132 3.52173 3.54941 3.65479 3.71549 3.71826 3.85011 3.85771 3.89283 3.92691 4.14749 4.18062 4.26652 4.34803 4.39253 4.52260 4.55245 4.59052 4.62754 4.68485 4.70106 4.73732 4.78246 4.91695 4.98956 5.01865 5.08701 5.15963 5.18614 5.28366 5.32188 5.46010 5.47472 5.49780 5.67771 5.97291 6.25827 6.44932 6.49623 7.09470 7.14306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.064 3.936 3 O -0.315 6.315 4 C 0.120 3.880 5 C -0.207 4.207 6 C -0.055 4.055 7 C -0.159 4.159 8 C -0.071 4.071 9 O -0.547 6.547 10 Si 0.753 3.247 11 C -0.077 4.077 12 C -0.162 4.162 13 C 0.515 3.485 14 O -0.574 6.574 15 N -0.693 5.693 16 C 0.116 3.884 17 H 0.083 0.917 18 C -0.142 4.142 19 C -0.117 4.117 20 H 0.078 0.922 21 C 0.136 3.864 22 N -0.377 5.377 23 C 0.257 3.743 24 N -0.586 5.586 25 C 0.186 3.814 26 N -0.352 5.352 27 C -0.113 4.113 28 H 0.114 0.886 29 H 0.083 0.917 30 H 0.058 0.942 31 H 0.129 0.871 32 H 0.157 0.843 33 H 0.141 0.859 34 H 0.128 0.872 35 H 0.385 0.615 36 H -0.286 1.286 37 H -0.303 1.303 38 H 0.146 0.854 39 H 0.132 0.868 40 H 0.423 0.577 41 H 0.042 0.958 42 H 0.115 0.885 43 H 0.145 0.855 44 H 0.101 0.899 45 H 0.260 0.740 46 H 0.230 0.770 47 H 0.130 0.870 48 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.380 -4.904 5.313 9.012 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.005 3.995 3 O -0.228 6.228 4 C 0.075 3.925 5 C -0.225 4.225 6 C -0.073 4.073 7 C -0.159 4.159 8 C -0.180 4.180 9 O -0.356 6.356 10 Si 0.660 3.340 11 C -0.094 4.094 12 C -0.180 4.180 13 C 0.301 3.699 14 O -0.452 6.452 15 N -0.347 5.347 16 C 0.011 3.989 17 H 0.101 0.899 18 C -0.180 4.180 19 C -0.137 4.137 20 H 0.096 0.904 21 C 0.015 3.985 22 N -0.168 5.168 23 C -0.039 4.039 24 N -0.314 5.314 25 C -0.117 4.117 26 N -0.180 5.180 27 C -0.151 4.151 28 H 0.132 0.868 29 H 0.102 0.898 30 H 0.077 0.923 31 H 0.146 0.854 32 H 0.174 0.826 33 H 0.159 0.841 34 H 0.145 0.855 35 H 0.235 0.765 36 H -0.213 1.213 37 H -0.231 1.231 38 H 0.164 0.836 39 H 0.150 0.850 40 H 0.262 0.738 41 H 0.061 0.939 42 H 0.134 0.866 43 H 0.163 0.837 44 H 0.120 0.880 45 H 0.276 0.724 46 H 0.246 0.754 47 H 0.148 0.852 48 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -4.786 -3.752 4.577 7.612 hybrid contribution -1.150 0.127 -0.101 1.162 sum -5.936 -3.625 4.476 8.271 Atomic orbital electron populations 1.22383 0.90439 1.05921 1.04225 1.22447 0.97164 0.82131 0.97801 1.86190 1.81495 1.27109 1.27999 1.19268 0.95851 0.93099 0.84309 1.21530 1.06491 1.02679 0.91778 1.21000 0.95213 0.93579 0.97540 1.20271 1.03729 0.96648 0.95263 1.25030 0.88756 1.10235 0.94004 1.86562 1.23189 1.75147 1.50659 0.94172 0.88602 0.73707 0.77553 1.20968 0.97747 0.99700 0.91031 1.20578 1.04078 0.94169 0.99188 1.20628 0.79572 0.82769 0.86931 1.90760 1.39128 1.67255 1.48067 1.45660 1.53245 1.10311 1.25470 1.22430 0.96429 0.92234 0.87778 0.89918 1.23594 0.97571 0.96183 1.00700 1.22526 0.98665 0.92879 0.99645 0.90386 1.22237 0.82389 0.90988 1.02838 1.50748 1.21082 1.40009 1.04949 1.26893 0.85370 0.90587 1.01054 1.70536 1.28449 1.29269 1.03192 1.26424 0.94233 0.94765 0.96293 1.77961 1.14552 1.25324 1.00202 1.23320 0.95418 0.92850 1.03561 0.86755 0.89781 0.92319 0.85408 0.82594 0.84075 0.85468 0.76534 1.21318 1.23121 0.83646 0.84964 0.73775 0.93930 0.86629 0.83679 0.88037 0.72438 0.75416 0.85205 0.90047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 1.36 9.07 71.98 0.65 2.02 16 2 C 0.06 -0.17 2.65 29.85 0.08 -0.09 16 3 O -0.31 -1.84 9.33 -73.40 -0.69 -2.52 16 4 C 0.12 0.37 6.60 22.50 0.15 0.52 16 5 C -0.21 0.41 8.24 22.37 0.18 0.59 16 6 C -0.06 0.09 9.60 22.25 0.21 0.30 16 7 C -0.16 0.11 5.39 -19.85 -0.11 0.01 16 8 C -0.07 0.11 2.82 71.24 0.20 0.31 16 9 O -0.55 -0.64 12.77 -148.98 -1.90 -2.54 16 10 Si 0.75 -1.23 29.78 68.60 2.04 0.81 16 11 C -0.08 0.00 8.66 22.26 0.19 0.19 16 12 C -0.16 -0.52 9.99 22.37 0.22 -0.29 16 13 C 0.52 1.06 7.23 87.65 0.63 1.69 16 14 O -0.57 -8.32 16.10 16.01 0.26 -8.07 16 15 N -0.69 4.82 5.25 -440.04 -2.31 2.51 16 16 C 0.12 -0.52 4.24 45.52 0.19 -0.33 16 17 H 0.08 0.28 7.46 -2.39 -0.02 0.26 16 18 C -0.14 0.81 7.43 31.12 0.23 1.05 16 19 C -0.12 0.83 3.88 -10.27 -0.04 0.79 16 20 H 0.08 0.01 8.01 -2.39 -0.02 -0.01 16 21 C 0.14 -1.38 6.39 86.38 0.55 -0.83 16 22 N -0.38 0.55 3.69 -352.06 -1.30 -0.74 16 23 C 0.26 -0.54 12.63 180.36 2.28 1.74 16 24 N -0.59 -3.28 11.19 -204.01 -2.28 -5.56 16 25 C 0.19 1.00 13.03 180.76 2.36 3.36 16 26 N -0.35 -2.08 12.46 -61.24 -0.76 -2.85 16 27 C -0.11 1.27 7.39 31.12 0.23 1.50 16 28 H 0.11 -1.75 7.56 -2.39 -0.02 -1.76 16 29 H 0.08 -0.70 6.90 -2.39 -0.02 -0.72 16 30 H 0.06 -0.20 8.14 -2.39 -0.02 -0.22 16 31 H 0.13 -1.11 6.32 -2.39 -0.02 -1.13 16 32 H 0.16 -1.27 5.43 -2.91 -0.02 -1.28 16 33 H 0.14 -0.58 8.06 -2.91 -0.02 -0.60 16 34 H 0.13 -0.45 7.96 -2.39 -0.02 -0.47 16 35 H 0.39 -1.51 8.70 -74.06 -0.64 -2.16 16 36 H -0.29 -0.77 7.11 99.48 0.71 -0.07 16 37 H -0.30 -1.85 7.11 99.48 0.71 -1.14 16 38 H 0.15 -0.51 4.87 -2.91 -0.01 -0.53 16 39 H 0.13 0.41 8.06 -2.91 -0.02 0.39 16 40 H 0.42 -6.70 8.14 -92.71 -0.76 -7.45 16 41 H 0.04 0.06 8.14 -2.39 -0.02 0.04 16 42 H 0.12 -1.30 7.90 -2.39 -0.02 -1.32 16 43 H 0.15 -2.69 7.79 -2.38 -0.02 -2.71 16 44 H 0.10 -1.13 8.14 -2.38 -0.02 -1.15 16 45 H 0.26 -3.33 8.06 -2.91 -0.02 -3.35 16 46 H 0.23 0.00 8.06 -2.91 -0.02 -0.02 16 47 H 0.13 -2.37 8.08 -2.39 -0.02 -2.39 16 48 H 0.08 -0.77 8.14 -2.38 -0.02 -0.79 16 Total: 0.00 -35.94 399.93 0.93 -35.01 By element: Atomic # 1 Polarization: -28.23 SS G_CDS: -0.35 Total: -28.58 kcal Atomic # 6 Polarization: 4.30 SS G_CDS: 8.22 Total: 12.52 kcal Atomic # 7 Polarization: 0.01 SS G_CDS: -6.65 Total: -6.64 kcal Atomic # 8 Polarization: -10.80 SS G_CDS: -2.33 Total: -13.13 kcal Atomic # 14 Polarization: -1.23 SS G_CDS: 2.04 Total: 0.81 kcal Total: -35.94 0.93 -35.01 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14644236_10157680.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.674 kcal (2) G-P(sol) polarization free energy of solvation -35.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.013 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.44 seconds