Wall clock time and date at job start Sun Mar 7 2021 00:05:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42903 * 1 3 3 Si 1.86300 * 109.47509 * 2 1 4 4 C 1.50702 * 109.47007 * 239.99614 * 2 1 3 5 5 C 1.35452 * 126.06399 * 119.69475 * 4 2 1 6 6 N 1.35531 * 108.87427 * 179.86634 * 5 4 2 7 7 C 1.37658 * 108.64014 * 0.40119 * 6 5 4 8 8 C 1.46677 * 126.23213 * 179.75806 * 7 6 5 9 9 O 1.21695 * 119.99982 * 179.97438 * 8 7 6 10 10 N 1.34782 * 120.00236 * 359.97438 * 8 7 6 11 11 C 1.46491 * 120.00073 * 179.97438 * 10 8 7 12 12 H 1.09003 * 112.85039 * 23.80273 * 11 10 8 13 13 C 1.53789 * 113.61421 * 154.99448 * 11 10 8 14 14 C 1.53787 * 87.07834 * 139.98255 * 13 11 10 15 15 H 1.08996 * 113.61292 * 89.11672 * 14 13 11 16 16 C 1.52994 * 113.61037 * 219.93766 * 14 13 11 17 17 N 1.46506 * 109.46900 * 184.99868 * 16 14 13 18 18 C 1.34432 * 126.81941 * 124.70994 * 17 16 14 19 19 N 1.30838 * 108.07753 * 179.89727 * 18 17 16 20 20 C 1.33241 * 109.82212 * 0.37966 * 19 18 17 21 21 N 1.30708 * 108.95053 * 359.76338 * 20 19 18 22 22 C 1.53777 * 113.61809 * 252.49280 * 11 10 8 23 23 C 1.37870 * 107.53075 * 359.75493 * 7 6 5 24 24 H 0.96700 * 113.99509 * 59.99951 * 1 2 3 25 25 H 1.09004 * 109.46926 * 120.00048 * 2 1 3 26 26 H 1.48502 * 109.99691 * 59.99915 * 3 2 1 27 27 H 1.48495 * 109.99988 * 181.31552 * 3 2 1 28 28 H 1.08008 * 125.56580 * 359.97438 * 5 4 2 29 29 H 0.97000 * 125.68620 * 180.13256 * 6 5 4 30 30 H 0.97003 * 119.99596 * 359.97438 * 10 8 7 31 31 H 1.08995 * 113.61700 * 254.52807 * 13 11 10 32 32 H 1.08995 * 113.61158 * 25.44009 * 13 11 10 33 33 H 1.09000 * 109.47438 * 304.99972 * 16 14 13 34 34 H 1.08995 * 109.47552 * 65.00516 * 16 14 13 35 35 H 1.08005 * 125.96302 * 0.03855 * 18 17 16 36 36 H 1.08001 * 125.52447 * 179.72982 * 20 19 18 37 37 H 1.09000 * 113.60991 * 334.57407 * 22 11 10 38 38 H 1.08999 * 113.61324 * 105.46536 * 22 11 10 39 39 H 1.08009 * 126.45262 * 180.02562 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 6 1.9313 -0.7105 -1.2304 5 6 2.7085 -0.1723 -2.2006 6 7 2.9555 -1.1180 -3.1395 7 6 2.3185 -2.2813 -2.7705 8 6 2.3254 -3.5464 -3.5127 9 8 1.7205 -4.5093 -3.0794 10 7 3.0018 -3.6425 -4.6745 11 6 3.0092 -4.9062 -5.4154 12 1 2.1502 -5.5367 -5.1855 13 6 3.2619 -4.7352 -6.9227 14 6 4.1430 -5.9928 -6.8377 15 1 3.5948 -6.9214 -6.9966 16 6 5.4190 -5.9049 -7.6772 17 7 6.1264 -7.1868 -7.6260 18 6 6.5044 -7.9408 -8.6728 19 7 7.1089 -9.0047 -8.2097 20 6 7.1288 -8.9693 -6.8779 21 7 6.5391 -7.8751 -6.4735 22 6 4.3545 -5.6486 -5.3540 23 6 1.6729 -2.0404 -1.5764 24 1 -0.3932 0.4417 -0.7651 25 1 1.7923 -0.5139 0.8900 26 1 1.5616 2.4678 1.2085 27 1 3.5347 1.7701 -0.0320 28 1 3.0735 0.8440 -2.2215 29 1 3.4887 -0.9946 -3.9403 30 1 3.4837 -2.8748 -5.0201 31 1 2.3688 -4.8683 -7.5331 32 1 3.8157 -3.8303 -7.1726 33 1 5.1592 -5.6743 -8.7103 34 1 6.0618 -5.1193 -7.2801 35 1 6.3399 -7.7078 -9.7146 36 1 7.5615 -9.7228 -6.2365 37 1 5.2069 -4.9933 -5.1749 38 1 4.3434 -6.5189 -4.6979 39 1 1.0797 -2.7463 -1.0138 There are 55 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 55 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14644236_10543058.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 00:05:32 Heat of formation + Delta-G solvation = 98.938287 kcal Electronic energy + Delta-G solvation = -23567.673520 eV Core-core repulsion = 19901.615451 eV Total energy + Delta-G solvation = -3666.058069 eV No. of doubly occupied orbitals = 55 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 304.132 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.98334 -42.49855 -40.97851 -39.38624 -37.64563 -35.55753 -34.15468 -32.49259 -32.16222 -30.80771 -29.03988 -26.76911 -26.61556 -25.09519 -23.55470 -22.86471 -22.19423 -21.45403 -20.98110 -20.62174 -19.76595 -18.36241 -17.54805 -17.43589 -16.92609 -16.66362 -16.49530 -16.14438 -15.91187 -15.73386 -15.54646 -15.09743 -14.89793 -14.74766 -14.43656 -14.36478 -13.94155 -13.73705 -13.49967 -13.46940 -13.20187 -12.89886 -12.30342 -12.25895 -11.97718 -11.94986 -11.47820 -11.28457 -10.98294 -10.79749 -10.57832 -10.37162 -10.25185 -9.94077 -9.29471 -4.92872 0.33132 0.70467 1.39898 1.46165 1.53069 1.72907 1.92704 2.01014 2.09528 2.14406 2.21995 3.28591 3.40372 3.53770 3.59846 3.67526 3.71844 3.79469 3.91962 3.96870 4.11669 4.16404 4.18169 4.31205 4.38035 4.56303 4.63470 4.67023 4.69585 4.77687 4.88173 4.93127 5.01238 5.02257 5.10543 5.33161 5.45132 5.45904 5.57360 5.71374 5.95951 6.34334 6.52284 6.90233 7.04038 7.13658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.566 6.566 2 C -0.055 4.055 3 Si 0.805 3.195 4 C -0.228 4.228 5 C 0.062 3.938 6 N -0.513 5.513 7 C -0.070 4.070 8 C 0.587 3.413 9 O -0.581 6.581 10 N -0.701 5.701 11 C 0.113 3.887 12 H 0.089 0.911 13 C -0.110 4.110 14 C -0.112 4.112 15 H 0.083 0.917 16 C 0.135 3.865 17 N -0.379 5.379 18 C 0.257 3.743 19 N -0.586 5.586 20 C 0.183 3.817 21 N -0.345 5.345 22 C -0.137 4.137 23 C -0.107 4.107 24 H 0.393 0.607 25 H 0.089 0.911 26 H -0.311 1.311 27 H -0.271 1.271 28 H 0.217 0.783 29 H 0.438 0.562 30 H 0.414 0.586 31 H 0.092 0.908 32 H 0.124 0.876 33 H 0.146 0.854 34 H 0.101 0.899 35 H 0.261 0.739 36 H 0.228 0.772 37 H 0.094 0.906 38 H 0.041 0.959 39 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.427 9.961 -10.010 14.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.374 6.374 2 C -0.164 4.164 3 Si 0.710 3.290 4 C -0.235 4.235 5 C -0.076 4.076 6 N -0.110 5.110 7 C -0.183 4.183 8 C 0.376 3.624 9 O -0.461 6.461 10 N -0.352 5.352 11 C 0.008 3.992 12 H 0.107 0.893 13 C -0.148 4.148 14 C -0.131 4.131 15 H 0.101 0.899 16 C 0.015 3.985 17 N -0.170 5.170 18 C -0.039 4.039 19 N -0.314 5.314 20 C -0.120 4.120 21 N -0.174 5.174 22 C -0.176 4.176 23 C -0.134 4.134 24 H 0.243 0.757 25 H 0.107 0.893 26 H -0.240 1.240 27 H -0.198 1.198 28 H 0.234 0.766 29 H 0.280 0.720 30 H 0.252 0.748 31 H 0.111 0.889 32 H 0.142 0.858 33 H 0.164 0.836 34 H 0.119 0.881 35 H 0.276 0.724 36 H 0.244 0.756 37 H 0.112 0.888 38 H 0.060 0.940 39 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 2.676 9.529 -8.391 12.976 hybrid contribution 0.212 -0.958 0.339 1.038 sum 2.888 8.571 -8.053 12.110 Atomic orbital electron populations 1.86456 1.18259 1.82407 1.50301 1.24781 0.84511 1.11412 0.95679 0.93894 0.77251 0.73026 0.84850 1.19962 1.07896 0.95048 1.00576 1.22386 1.00310 0.95954 0.88978 1.41825 1.39667 1.08118 1.21413 1.20089 1.09441 0.88251 1.00476 1.17348 0.78245 0.85986 0.80870 1.90852 1.46419 1.39393 1.69387 1.45651 1.52277 1.15241 1.21983 1.22554 0.98282 0.85339 0.93029 0.89329 1.23304 1.00477 0.98077 0.92945 1.22492 0.96033 0.99596 0.95015 0.89887 1.22230 0.91539 0.80097 1.04648 1.50790 1.43102 1.19427 1.03701 1.26935 0.92696 0.86678 0.97624 1.70544 1.25276 1.24796 1.10792 1.26420 0.97868 0.96319 0.91410 1.78011 1.20715 1.09521 1.09107 1.23447 0.97688 0.99773 0.96657 1.21212 1.00392 0.96793 0.95036 0.75687 0.89331 1.23965 1.19780 0.76620 0.72000 0.74843 0.88937 0.85768 0.83590 0.88050 0.72372 0.75601 0.88768 0.93983 0.86237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.57 -1.74 12.88 -148.98 -1.92 -3.66 16 2 C -0.05 -0.04 3.02 71.24 0.22 0.18 16 3 Si 0.81 -3.96 30.59 68.60 2.10 -1.87 16 4 C -0.23 -0.09 5.44 -20.12 -0.11 -0.20 16 5 C 0.06 -0.45 10.45 83.48 0.87 0.42 16 6 N -0.51 3.94 5.99 -183.61 -1.10 2.84 16 7 C -0.07 -0.17 7.06 40.35 0.28 0.12 16 8 C 0.59 3.41 7.79 86.45 0.67 4.08 16 9 O -0.58 -9.72 16.48 -4.33 -0.07 -9.79 16 10 N -0.70 2.59 5.35 -444.00 -2.38 0.21 16 11 C 0.11 -0.29 4.24 45.52 0.19 -0.10 16 12 H 0.09 0.37 7.46 -2.39 -0.02 0.35 16 13 C -0.11 1.25 7.39 31.13 0.23 1.48 16 14 C -0.11 0.79 3.85 -10.27 -0.04 0.75 16 15 H 0.08 -0.23 8.14 -2.39 -0.02 -0.25 16 16 C 0.14 -1.37 6.39 86.38 0.55 -0.82 16 17 N -0.38 0.55 3.69 -352.05 -1.30 -0.75 16 18 C 0.26 -0.52 12.63 180.36 2.28 1.76 16 19 N -0.59 -3.35 11.19 -203.99 -2.28 -5.63 16 20 C 0.18 1.03 13.03 180.77 2.36 3.39 16 21 N -0.35 -2.04 12.57 -61.25 -0.77 -2.81 16 22 C -0.14 0.24 7.43 31.12 0.23 0.47 16 23 C -0.11 -0.73 10.59 22.57 0.24 -0.49 16 24 H 0.39 -2.30 8.70 -74.06 -0.64 -2.95 16 25 H 0.09 0.36 7.96 -2.38 -0.02 0.35 16 26 H -0.31 -1.37 7.11 99.48 0.71 -0.66 16 27 H -0.27 0.67 7.11 99.48 0.71 1.38 16 28 H 0.22 -3.38 6.19 -2.91 -0.02 -3.39 16 29 H 0.44 -7.12 8.19 -92.71 -0.76 -7.88 16 30 H 0.41 -5.10 7.86 -92.71 -0.73 -5.82 16 31 H 0.09 -1.09 8.14 -2.39 -0.02 -1.11 16 32 H 0.12 -2.18 8.08 -2.39 -0.02 -2.20 16 33 H 0.15 -2.63 8.09 -2.39 -0.02 -2.65 16 34 H 0.10 -1.19 7.85 -2.39 -0.02 -1.21 16 35 H 0.26 -3.30 8.06 -2.91 -0.02 -3.33 16 36 H 0.23 0.12 8.06 -2.91 -0.02 0.10 16 37 H 0.09 -0.33 7.90 -2.39 -0.02 -0.35 16 38 H 0.04 0.25 8.14 -2.39 -0.02 0.23 16 39 H 0.12 1.42 8.06 -2.91 -0.02 1.40 16 Total: 0.00 -37.70 339.12 -0.72 -38.42 By element: Atomic # 1 Polarization: -27.02 SS G_CDS: -0.98 Total: -28.00 kcal Atomic # 6 Polarization: 3.06 SS G_CDS: 7.97 Total: 11.03 kcal Atomic # 7 Polarization: 1.69 SS G_CDS: -7.83 Total: -6.13 kcal Atomic # 8 Polarization: -11.46 SS G_CDS: -1.99 Total: -13.45 kcal Atomic # 14 Polarization: -3.96 SS G_CDS: 2.10 Total: -1.87 kcal Total: -37.70 -0.72 -38.42 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14644236_10543058.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.357 kcal (2) G-P(sol) polarization free energy of solvation -37.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.419 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds