Wall clock time and date at job start Sun Mar 7 2021 00:05:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.35533 * 125.67470 * 2 1 4 4 C 1.35455 * 108.87091 * 180.02562 * 3 2 1 5 5 C 1.50690 * 126.06961 * 180.02562 * 4 3 2 6 6 O 1.42899 * 109.47576 * 119.97456 * 5 4 3 7 7 Si 1.86302 * 109.47142 * 359.97438 * 5 4 3 8 8 C 1.39836 * 107.86187 * 359.73761 * 4 3 2 9 9 C 1.37650 * 125.67699 * 180.02562 * 2 1 3 10 10 C 1.46677 * 126.23710 * 359.97438 * 9 2 1 11 11 O 1.21693 * 120.00032 * 4.96688 * 10 9 2 12 12 N 1.34777 * 120.00088 * 184.97091 * 10 9 2 13 13 C 1.46501 * 120.00108 * 174.27907 * 12 10 9 14 14 H 1.09007 * 112.84608 * 25.32832 * 13 12 10 15 15 C 1.53778 * 113.61524 * 156.52273 * 13 12 10 16 16 C 1.53789 * 87.07851 * 140.06746 * 15 13 12 17 17 H 1.08997 * 113.61442 * 89.11813 * 16 15 13 18 18 C 1.53000 * 113.61174 * 220.02399 * 16 15 13 19 19 N 1.46508 * 109.46759 * 184.99933 * 18 16 15 20 20 C 1.34424 * 126.81889 * 124.71042 * 19 18 16 21 21 N 1.30838 * 108.07260 * 179.89366 * 20 19 18 22 22 C 1.33246 * 109.82904 * 0.37883 * 21 20 19 23 23 N 1.30710 * 108.94361 * 359.76458 * 22 21 20 24 24 C 1.53777 * 113.69004 * 254.06357 * 13 12 10 25 25 H 1.09004 * 109.47160 * 264.27292 * 1 2 3 26 26 H 1.08997 * 109.47172 * 24.27746 * 1 2 3 27 27 H 1.08995 * 109.46886 * 144.27936 * 1 2 3 28 28 H 1.07995 * 125.56796 * 0.05616 * 3 2 1 29 29 H 1.09000 * 109.47886 * 239.97617 * 5 4 3 30 30 H 0.96705 * 113.99716 * 300.00419 * 6 5 4 31 31 H 1.48499 * 110.00086 * 58.67838 * 7 5 4 32 32 H 1.48507 * 110.00378 * 180.02562 * 7 5 4 33 33 H 1.08000 * 126.45808 * 180.29916 * 8 4 3 34 34 H 0.96998 * 119.99745 * 354.27182 * 12 10 9 35 35 H 1.08997 * 113.61863 * 254.61436 * 15 13 12 36 36 H 1.08997 * 113.61290 * 25.43637 * 15 13 12 37 37 H 1.08995 * 109.47027 * 304.99808 * 18 16 15 38 38 H 1.09000 * 109.47360 * 65.00103 * 18 16 15 39 39 H 1.07996 * 125.96871 * 0.03705 * 20 19 18 40 40 H 1.07997 * 125.52443 * 179.80628 * 22 21 20 41 41 H 1.09000 * 113.61284 * 334.55497 * 24 13 12 42 42 H 1.09001 * 113.61734 * 105.45925 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2554 1.1010 0.0000 4 6 3.5522 0.7094 -0.0006 5 6 4.7536 1.6189 -0.0002 6 8 5.5400 1.3690 1.1664 7 14 4.1886 3.3942 0.0003 8 6 3.5780 -0.6887 0.0051 9 6 2.2678 -1.1182 -0.0005 10 6 1.8125 -2.5125 -0.0006 11 8 0.6255 -2.7649 -0.0915 12 7 2.7087 -3.5141 0.1000 13 6 2.2482 -4.8991 0.2262 14 1 1.2565 -5.0557 -0.1983 15 6 3.2856 -5.9374 -0.2324 16 6 2.8473 -6.7903 0.9698 17 1 2.0196 -7.4640 0.7486 18 6 4.0081 -7.4870 1.6826 19 7 3.4814 -8.3637 2.7316 20 6 3.7184 -9.6790 2.8765 21 7 3.0690 -10.0944 3.9337 22 6 2.4026 -9.0794 4.4825 23 7 2.6237 -7.9983 3.7819 24 6 2.4107 -5.4777 1.6417 25 1 -0.3634 -0.1026 1.0226 26 1 -0.3633 0.9368 -0.4225 27 1 -0.3633 -0.8343 -0.6000 28 1 1.9082 2.1236 0.0009 29 1 5.3535 1.4290 -0.8902 30 1 5.0689 1.5182 1.9977 31 1 3.3433 3.6578 1.1925 32 1 5.3643 4.3015 0.0001 33 1 4.4583 -1.3143 0.0108 34 1 3.6585 -3.3179 0.0888 35 1 3.0538 -6.3900 -1.1965 36 1 4.3148 -5.5845 -0.1671 37 1 4.5729 -8.0799 0.9633 38 1 4.6621 -6.7382 2.1295 39 1 4.3386 -10.2863 2.2340 40 1 1.7811 -9.1401 5.3637 41 1 3.2009 -4.9997 2.2207 42 1 1.4725 -5.5592 2.1905 There are 58 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 58 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14644236_10803934.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 00:05:35 Heat of formation + Delta-G solvation = 107.817073 kcal Electronic energy + Delta-G solvation = -25819.817241 eV Core-core repulsion = 21998.606566 eV Total energy + Delta-G solvation = -3821.210675 eV No. of doubly occupied orbitals = 58 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 318.148 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.97773 -42.57041 -40.95542 -39.33224 -37.82128 -35.57112 -34.35590 -33.64581 -32.15734 -30.98881 -28.98200 -28.28571 -26.75086 -25.83078 -24.97368 -23.41248 -22.85862 -22.16326 -21.31473 -21.00595 -20.21082 -18.85936 -18.31410 -17.84841 -17.26982 -16.87893 -16.81127 -16.56234 -16.17557 -15.93177 -15.74044 -15.53014 -15.45718 -15.09005 -14.97304 -14.49654 -14.42593 -14.01587 -13.74933 -13.47878 -13.45298 -13.26601 -13.22508 -13.12946 -12.86836 -12.44569 -12.23903 -11.94496 -11.80704 -11.42542 -11.17145 -10.97630 -10.79045 -10.57500 -10.48398 -10.17193 -9.71014 -9.27842 -4.86463 0.37827 0.71169 1.36997 1.45834 1.56766 1.59178 1.68322 2.01546 2.03779 2.24911 2.31929 3.29527 3.42828 3.53304 3.54261 3.59272 3.70889 3.76088 3.82638 3.93237 4.02235 4.12232 4.18856 4.22875 4.32273 4.33584 4.38395 4.57004 4.67449 4.69949 4.71859 4.73428 4.78756 4.79330 4.95833 5.02896 5.13724 5.18468 5.34202 5.46150 5.49359 5.66849 5.87143 5.96067 6.14600 6.44575 6.60359 7.09379 7.14168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.064 3.936 2 N -0.414 5.414 3 C 0.034 3.966 4 C -0.216 4.216 5 C -0.043 4.043 6 O -0.551 6.551 7 Si 0.766 3.234 8 C -0.109 4.109 9 C -0.081 4.081 10 C 0.585 3.415 11 O -0.587 6.587 12 N -0.695 5.695 13 C 0.117 3.883 14 H 0.092 0.908 15 C -0.113 4.113 16 C -0.110 4.110 17 H 0.086 0.914 18 C 0.134 3.866 19 N -0.379 5.379 20 C 0.257 3.743 21 N -0.586 5.586 22 C 0.183 3.817 23 N -0.345 5.345 24 C -0.136 4.136 25 H 0.075 0.925 26 H 0.118 0.882 27 H 0.083 0.917 28 H 0.200 0.800 29 H 0.121 0.879 30 H 0.383 0.617 31 H -0.282 1.282 32 H -0.308 1.308 33 H 0.160 0.840 34 H 0.417 0.583 35 H 0.093 0.907 36 H 0.119 0.881 37 H 0.146 0.854 38 H 0.099 0.901 39 H 0.260 0.740 40 H 0.229 0.771 41 H 0.090 0.910 42 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.225 1.387 -5.232 6.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 N -0.086 5.086 3 C -0.102 4.102 4 C -0.223 4.223 5 C -0.153 4.153 6 O -0.359 6.359 7 Si 0.672 3.328 8 C -0.135 4.135 9 C -0.193 4.193 10 C 0.375 3.625 11 O -0.470 6.470 12 N -0.346 5.346 13 C 0.012 3.988 14 H 0.111 0.889 15 C -0.151 4.151 16 C -0.129 4.129 17 H 0.104 0.896 18 C 0.014 3.986 19 N -0.170 5.170 20 C -0.039 4.039 21 N -0.314 5.314 22 C -0.120 4.120 23 N -0.173 5.173 24 C -0.175 4.175 25 H 0.093 0.907 26 H 0.137 0.863 27 H 0.101 0.899 28 H 0.216 0.784 29 H 0.139 0.861 30 H 0.232 0.768 31 H -0.209 1.209 32 H -0.236 1.236 33 H 0.177 0.823 34 H 0.255 0.745 35 H 0.111 0.889 36 H 0.138 0.862 37 H 0.163 0.837 38 H 0.117 0.883 39 H 0.276 0.724 40 H 0.245 0.755 41 H 0.109 0.891 42 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 2.160 2.194 -5.083 5.943 hybrid contribution 0.270 -0.422 1.335 1.426 sum 2.430 1.772 -3.748 4.805 Atomic orbital electron populations 1.22384 0.74991 1.06047 1.04224 1.44036 1.07592 1.04914 1.52026 1.22340 0.89919 0.92464 1.05524 1.19840 0.94084 0.94741 1.13614 1.24469 0.92384 1.07931 0.90521 1.86552 1.42209 1.90364 1.16732 0.94379 0.79592 0.71976 0.86885 1.21418 0.94185 0.95169 1.02732 1.20105 0.91045 0.87533 1.20665 1.17288 0.85423 0.84489 0.75323 1.90781 1.17993 1.85453 1.52730 1.45518 1.10003 1.05556 1.73484 1.22544 0.99797 0.79289 0.97190 0.88944 1.23301 1.00061 0.93692 0.98047 1.22484 0.98218 0.95390 0.96850 0.89583 1.22224 0.95384 0.94280 0.86705 1.50780 1.35394 1.08970 1.21834 1.26923 0.97388 0.84049 0.95574 1.70545 1.15938 1.33226 1.11681 1.26429 0.99106 0.85613 1.00843 1.78011 1.13140 1.24641 1.01540 1.23441 1.01642 0.96092 0.96305 0.90651 0.86349 0.89858 0.78378 0.86116 0.76775 1.20894 1.23627 0.82277 0.74541 0.88851 0.86240 0.83660 0.88295 0.72430 0.75521 0.89137 0.93684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 -0.05 10.48 127.77 1.34 1.29 16 2 N -0.41 -0.79 3.16 -534.31 -1.69 -2.48 16 3 C 0.03 -0.06 9.92 83.48 0.83 0.76 16 4 C -0.22 0.16 5.44 -20.12 -0.11 0.05 16 5 C -0.04 0.08 3.02 71.23 0.22 0.30 16 6 O -0.55 -0.82 12.88 -148.98 -1.92 -2.74 16 7 Si 0.77 -2.72 30.59 68.60 2.10 -0.63 16 8 C -0.11 -0.04 10.29 22.57 0.23 0.19 16 9 C -0.08 -0.31 6.89 40.35 0.28 -0.03 16 10 C 0.59 3.57 7.77 86.45 0.67 4.25 16 11 O -0.59 -7.77 14.37 -4.33 -0.06 -7.83 16 12 N -0.69 0.68 5.35 -444.00 -2.37 -1.69 16 13 C 0.12 -0.17 4.25 45.52 0.19 0.02 16 14 H 0.09 0.37 7.44 -2.38 -0.02 0.35 16 15 C -0.11 1.05 7.39 31.12 0.23 1.28 16 16 C -0.11 0.64 3.85 -10.26 -0.04 0.60 16 17 H 0.09 -0.21 8.14 -2.39 -0.02 -0.22 16 18 C 0.13 -1.14 6.39 86.38 0.55 -0.59 16 19 N -0.38 0.17 3.69 -352.05 -1.30 -1.13 16 20 C 0.26 -0.31 12.63 180.36 2.28 1.97 16 21 N -0.59 -3.66 11.19 -204.01 -2.28 -5.95 16 22 C 0.18 1.11 13.03 180.76 2.36 3.46 16 23 N -0.34 -2.25 12.57 -61.25 -0.77 -3.02 16 24 C -0.14 0.09 7.43 31.12 0.23 0.32 16 25 H 0.07 -0.04 8.14 -2.39 -0.02 -0.06 16 26 H 0.12 -0.89 8.12 -2.39 -0.02 -0.91 16 27 H 0.08 0.30 6.55 -2.39 -0.02 0.29 16 28 H 0.20 -1.63 6.19 -2.91 -0.02 -1.65 16 29 H 0.12 -0.40 7.96 -2.39 -0.02 -0.42 16 30 H 0.38 -1.30 8.70 -74.05 -0.64 -1.95 16 31 H -0.28 -0.04 7.11 99.48 0.71 0.66 16 32 H -0.31 -1.52 7.11 99.48 0.71 -0.82 16 33 H 0.16 -0.59 7.45 -2.91 -0.02 -0.62 16 34 H 0.42 -2.80 7.61 -92.71 -0.71 -3.50 16 35 H 0.09 -0.95 8.14 -2.39 -0.02 -0.97 16 36 H 0.12 -1.69 8.07 -2.39 -0.02 -1.70 16 37 H 0.15 -2.36 8.09 -2.39 -0.02 -2.38 16 38 H 0.10 -0.93 7.84 -2.39 -0.02 -0.94 16 39 H 0.26 -3.05 8.06 -2.91 -0.02 -3.08 16 40 H 0.23 0.17 8.06 -2.91 -0.02 0.14 16 41 H 0.09 -0.12 7.90 -2.39 -0.02 -0.14 16 42 H 0.04 0.27 8.14 -2.39 -0.02 0.25 16 Total: 0.00 -29.97 357.40 0.71 -29.27 By element: Atomic # 1 Polarization: -17.42 SS G_CDS: -0.25 Total: -17.67 kcal Atomic # 6 Polarization: 4.62 SS G_CDS: 9.26 Total: 13.88 kcal Atomic # 7 Polarization: -5.86 SS G_CDS: -8.42 Total: -14.27 kcal Atomic # 8 Polarization: -8.59 SS G_CDS: -1.98 Total: -10.57 kcal Atomic # 14 Polarization: -2.72 SS G_CDS: 2.10 Total: -0.63 kcal Total: -29.97 0.71 -29.27 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14644236_10803934.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.084 kcal (2) G-P(sol) polarization free energy of solvation -29.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 107.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.267 kcal (6) G-S(sol) free energy of system = (1) + (5) 107.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds