Wall clock time and date at job start Sun Mar 7 2021 00:05:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.37650 * 125.67991 * 2 1 4 4 C 1.46678 * 126.23306 * 0.02562 * 3 2 1 5 5 O 1.21694 * 119.99792 * 4.64564 * 4 3 2 6 6 N 1.34780 * 119.99490 * 184.64931 * 4 3 2 7 7 C 1.46497 * 119.99489 * 175.17718 * 6 4 3 8 8 H 1.09007 * 112.85119 * 335.91560 * 7 6 4 9 9 C 1.53777 * 113.61978 * 107.22484 * 7 6 4 10 10 C 1.53777 * 87.08140 * 139.97842 * 9 7 6 11 11 H 1.09000 * 113.68958 * 89.13309 * 10 9 7 12 12 C 1.53002 * 113.61575 * 220.01741 * 10 9 7 13 13 N 1.46497 * 109.47558 * 272.50268 * 12 10 9 14 14 C 1.34432 * 126.82622 * 124.99315 * 13 12 10 15 15 N 1.30830 * 108.07645 * 179.97438 * 14 13 12 16 16 C 1.33239 * 109.83206 * 0.02562 * 15 14 13 17 17 N 1.30718 * 108.94536 * 359.75697 * 16 15 14 18 18 C 1.53775 * 87.08165 * 334.56975 * 10 9 7 19 19 C 1.37871 * 107.52948 * 179.73682 * 3 2 1 20 20 C 1.39838 * 107.09046 * 0.22846 * 19 3 2 21 21 C 1.35447 * 107.85969 * 359.97438 * 20 19 3 22 22 C 1.50706 * 125.56270 * 180.02562 * 21 20 19 23 23 O 1.42901 * 109.46967 * 149.97667 * 22 21 20 24 24 Si 1.86298 * 109.46922 * 29.97808 * 22 21 20 25 25 H 1.09001 * 109.47322 * 95.78231 * 1 2 3 26 26 H 1.08995 * 109.47495 * 215.78843 * 1 2 3 27 27 H 1.09005 * 109.47079 * 335.78543 * 1 2 3 28 28 H 0.97000 * 120.00120 * 354.89454 * 6 4 3 29 29 H 1.08998 * 113.61816 * 254.52928 * 9 7 6 30 30 H 1.09000 * 113.61015 * 25.42667 * 9 7 6 31 31 H 1.09003 * 109.46927 * 32.49909 * 12 10 9 32 32 H 1.08994 * 109.47260 * 152.49670 * 12 10 9 33 33 H 1.07996 * 125.95849 * 0.02562 * 14 13 12 34 34 H 1.07998 * 125.52951 * 179.97438 * 16 15 14 35 35 H 1.09005 * 113.61526 * 270.88012 * 18 10 9 36 36 H 1.09005 * 113.69248 * 139.99467 * 18 10 9 37 37 H 1.07999 * 126.45634 * 180.19244 * 19 3 2 38 38 H 1.07999 * 126.07009 * 180.02562 * 20 19 3 39 39 H 1.08997 * 109.47314 * 269.97710 * 22 21 20 40 40 H 0.96693 * 113.99806 * 299.99625 * 23 22 21 41 41 H 1.48492 * 110.00470 * 58.68022 * 24 22 21 42 42 H 1.48500 * 110.00039 * 180.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2678 1.1181 0.0000 4 6 1.8125 2.5124 0.0005 5 8 0.6250 2.7646 0.0864 6 7 2.7092 3.5141 -0.0942 7 6 2.2495 4.9011 -0.2001 8 1 1.2399 4.9828 -0.6032 9 6 2.4720 5.7235 1.0801 10 6 2.8747 6.8921 0.1653 11 1 2.0368 7.5201 -0.1374 12 6 4.0633 7.7000 0.6902 13 7 3.5803 8.7530 1.5868 14 6 3.9667 8.9706 2.8559 15 7 3.3039 10.0028 3.3108 16 6 2.4882 10.4684 2.3657 17 7 2.6251 9.7388 1.2897 18 6 3.2625 5.8354 -0.8824 19 6 3.5779 0.6886 0.0060 20 6 3.5521 -0.7095 0.0044 21 6 2.2554 -1.1010 -0.0019 22 6 1.7707 -2.5280 -0.0052 23 8 0.5099 -2.6042 0.6630 24 14 3.0075 -3.6059 0.8775 25 1 -0.3634 -0.1035 -1.0224 26 1 -0.3634 -0.8336 0.6009 27 1 -0.3633 0.9373 0.4215 28 1 3.6590 3.3171 -0.0880 29 1 1.5585 5.9065 1.6458 30 1 3.2882 5.3532 1.7004 31 1 4.7386 7.0403 1.2351 32 1 4.5942 8.1515 -0.1478 33 1 4.6975 8.3944 3.4040 34 1 1.8244 11.3139 2.4704 35 1 4.2949 5.4958 -0.7986 36 1 2.9880 6.1076 -1.9016 37 1 4.4583 1.3142 0.0106 38 1 4.4131 -1.3614 0.0083 39 1 1.6582 -2.8712 -1.0336 40 1 0.5351 -2.3136 1.5849 41 1 3.1937 -3.1289 2.2713 42 1 2.5415 -5.0159 0.8807 There are 58 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 58 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14644236_10803936.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 00:05:38 Heat of formation + Delta-G solvation = 108.971784 kcal Electronic energy + Delta-G solvation = -25862.934360 eV Core-core repulsion = 22041.773757 eV Total energy + Delta-G solvation = -3821.160603 eV No. of doubly occupied orbitals = 58 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 318.148 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -42.98213 -42.60806 -40.99054 -39.37365 -37.95196 -35.58212 -34.32422 -33.57587 -32.16278 -31.38698 -29.09975 -27.55429 -26.91427 -26.75108 -24.52246 -23.18115 -22.93238 -22.26192 -21.42469 -20.94348 -20.21997 -18.85728 -18.40321 -18.11456 -17.44955 -16.98387 -16.69486 -16.35134 -16.28228 -16.05275 -15.76259 -15.45245 -15.35034 -15.04207 -14.88422 -14.54642 -14.42896 -14.24705 -13.83460 -13.68584 -13.47856 -13.27318 -13.19565 -12.94240 -12.71123 -12.38004 -12.37441 -11.95277 -11.89006 -11.54882 -11.24552 -10.97636 -10.82762 -10.78538 -10.52117 -10.16986 -9.74333 -9.09857 -4.87447 0.34681 0.70745 1.18326 1.45554 1.54117 1.73456 1.77966 2.01342 2.02771 2.30100 2.35138 3.13399 3.36394 3.46028 3.47650 3.54334 3.56872 3.70354 3.77986 3.89165 3.96387 4.14803 4.18051 4.25535 4.35329 4.38842 4.48343 4.52210 4.55385 4.66271 4.68646 4.73554 4.77686 4.92185 5.01830 5.10406 5.17110 5.21023 5.31628 5.45698 5.50573 5.73708 5.96550 5.99818 6.12465 6.28352 6.48855 7.12188 7.13666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.056 3.944 2 N -0.409 5.409 3 C -0.087 4.087 4 C 0.584 3.416 5 O -0.594 6.594 6 N -0.689 5.689 7 C 0.119 3.881 8 H 0.084 0.916 9 C -0.141 4.141 10 C -0.115 4.115 11 H 0.079 0.921 12 C 0.136 3.864 13 N -0.377 5.377 14 C 0.257 3.743 15 N -0.586 5.586 16 C 0.185 3.815 17 N -0.351 5.351 18 C -0.113 4.113 19 C -0.121 4.121 20 C -0.201 4.201 21 C 0.004 3.996 22 C -0.070 4.070 23 O -0.548 6.548 24 Si 0.821 3.179 25 H 0.067 0.933 26 H 0.110 0.890 27 H 0.084 0.916 28 H 0.421 0.579 29 H 0.042 0.958 30 H 0.112 0.888 31 H 0.144 0.856 32 H 0.103 0.897 33 H 0.260 0.740 34 H 0.230 0.770 35 H 0.128 0.872 36 H 0.082 0.918 37 H 0.181 0.819 38 H 0.186 0.814 39 H 0.130 0.870 40 H 0.386 0.614 41 H -0.290 1.290 42 H -0.299 1.299 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.062 -3.705 -1.658 10.850 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 N -0.083 5.083 3 C -0.200 4.200 4 C 0.373 3.627 5 O -0.476 6.476 6 N -0.341 5.341 7 C 0.014 3.986 8 H 0.102 0.898 9 C -0.180 4.180 10 C -0.135 4.135 11 H 0.098 0.902 12 C 0.016 3.984 13 N -0.168 5.168 14 C -0.039 4.039 15 N -0.314 5.314 16 C -0.117 4.117 17 N -0.180 5.180 18 C -0.152 4.152 19 C -0.147 4.147 20 C -0.224 4.224 21 C -0.113 4.113 22 C -0.177 4.177 23 O -0.356 6.356 24 Si 0.723 3.277 25 H 0.086 0.914 26 H 0.128 0.872 27 H 0.103 0.897 28 H 0.260 0.740 29 H 0.061 0.939 30 H 0.130 0.870 31 H 0.162 0.838 32 H 0.121 0.879 33 H 0.275 0.725 34 H 0.246 0.754 35 H 0.146 0.854 36 H 0.101 0.899 37 H 0.199 0.801 38 H 0.203 0.797 39 H 0.148 0.852 40 H 0.236 0.764 41 H -0.216 1.216 42 H -0.227 1.227 Dipole moment (debyes) X Y Z Total from point charges 8.441 -4.033 -1.957 9.557 hybrid contribution -1.390 0.530 0.671 1.632 sum 7.051 -3.503 -1.286 7.978 Atomic orbital electron populations 1.22489 0.76350 1.05640 1.03986 1.43921 1.06949 1.04834 1.52561 1.20257 0.91717 0.87106 1.20943 1.17359 0.85371 0.84636 0.75301 1.90769 1.18446 1.85474 1.52946 1.45445 1.10083 1.05006 1.73517 1.22431 0.99405 0.78859 0.97860 0.89780 1.23579 1.02128 0.95442 0.96868 1.22514 0.98408 0.94773 0.97799 0.90242 1.22234 0.95920 0.86175 0.94121 1.50755 1.30114 1.23784 1.12148 1.26891 0.98277 0.94611 0.84133 1.70536 1.13337 1.14075 1.33493 1.26432 0.98518 1.00430 0.86368 1.77954 1.11338 1.03755 1.24946 1.23322 1.00797 0.92551 0.98516 1.21758 0.94182 0.95807 1.02970 1.21037 0.95274 0.95694 1.10383 1.21484 0.91700 0.89200 1.08929 1.25311 0.93225 0.94394 1.04756 1.86562 1.30700 1.88403 1.29970 0.93295 0.82743 0.73116 0.78540 0.91436 0.87159 0.89725 0.74018 0.93948 0.86958 0.83775 0.87921 0.72480 0.75366 0.85364 0.89907 0.80137 0.79674 0.85210 0.76449 1.21645 1.22676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.28 10.31 127.77 1.32 1.60 16 2 N -0.41 -1.86 3.16 -519.70 -1.64 -3.50 16 3 C -0.09 -0.30 6.89 40.35 0.28 -0.02 16 4 C 0.58 3.30 7.77 86.45 0.67 3.97 16 5 O -0.59 -8.51 14.18 -4.33 -0.06 -8.57 16 6 N -0.69 2.17 5.34 -444.00 -2.37 -0.20 16 7 C 0.12 -0.30 4.21 45.52 0.19 -0.11 16 8 H 0.08 0.38 7.53 -2.38 -0.02 0.36 16 9 C -0.14 0.56 7.43 31.12 0.23 0.79 16 10 C -0.12 0.67 3.88 -10.27 -0.04 0.63 16 11 H 0.08 0.07 8.01 -2.39 -0.02 0.05 16 12 C 0.14 -1.23 6.39 86.38 0.55 -0.67 16 13 N -0.38 0.22 3.69 -352.07 -1.30 -1.08 16 14 C 0.26 -0.32 12.63 180.36 2.28 1.96 16 15 N -0.59 -3.67 11.19 -204.00 -2.28 -5.95 16 16 C 0.19 1.11 13.03 180.76 2.36 3.46 16 17 N -0.35 -2.30 12.46 -61.24 -0.76 -3.07 16 18 C -0.11 1.08 7.39 31.12 0.23 1.31 16 19 C -0.12 0.41 10.35 22.57 0.23 0.64 16 20 C -0.20 0.78 9.37 22.01 0.21 0.98 16 21 C 0.00 0.00 6.15 41.34 0.25 0.25 16 22 C -0.07 0.17 2.99 71.24 0.21 0.38 16 23 O -0.55 -0.24 10.11 -148.98 -1.51 -1.75 16 24 Si 0.82 -4.21 31.10 68.60 2.13 -2.08 16 25 H 0.07 0.37 8.14 -2.39 -0.02 0.35 16 26 H 0.11 0.21 5.24 -2.39 -0.01 0.19 16 27 H 0.08 0.77 5.92 -2.38 -0.01 0.76 16 28 H 0.42 -4.51 7.63 -92.71 -0.71 -5.22 16 29 H 0.04 0.12 8.14 -2.39 -0.02 0.10 16 30 H 0.11 -0.98 7.90 -2.39 -0.02 -1.00 16 31 H 0.14 -2.46 7.79 -2.39 -0.02 -2.48 16 32 H 0.10 -1.05 8.14 -2.39 -0.02 -1.07 16 33 H 0.26 -3.07 8.06 -2.91 -0.02 -3.09 16 34 H 0.23 0.10 8.06 -2.91 -0.02 0.08 16 35 H 0.13 -2.07 8.08 -2.38 -0.02 -2.08 16 36 H 0.08 -0.68 8.14 -2.38 -0.02 -0.70 16 37 H 0.18 -2.07 7.45 -2.91 -0.02 -2.09 16 38 H 0.19 -2.06 6.85 -2.91 -0.02 -2.08 16 39 H 0.13 -0.51 7.96 -2.39 -0.02 -0.53 16 40 H 0.39 -1.54 8.29 -74.06 -0.61 -2.16 16 41 H -0.29 -0.11 7.11 99.48 0.71 0.60 16 42 H -0.30 -0.68 7.11 99.48 0.71 0.03 16 Total: 0.00 -31.97 351.55 0.96 -31.01 By element: Atomic # 1 Polarization: -19.77 SS G_CDS: -0.21 Total: -19.99 kcal Atomic # 6 Polarization: 6.20 SS G_CDS: 8.97 Total: 15.17 kcal Atomic # 7 Polarization: -5.44 SS G_CDS: -8.36 Total: -13.80 kcal Atomic # 8 Polarization: -8.76 SS G_CDS: -1.57 Total: -10.32 kcal Atomic # 14 Polarization: -4.21 SS G_CDS: 2.13 Total: -2.08 kcal Total: -31.97 0.96 -31.01 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14644236_10803936.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.982 kcal (2) G-P(sol) polarization free energy of solvation -31.974 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 108.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.010 kcal (6) G-S(sol) free energy of system = (1) + (5) 108.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds