Wall clock time and date at job start Sun Mar 7 2021 00:05:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42899 * 1 3 3 Si 1.86304 * 109.46763 * 2 1 4 4 C 1.50698 * 109.47429 * 240.00263 * 2 1 3 5 5 C 1.36455 * 120.29631 * 239.93756 * 4 2 1 6 6 C 1.40089 * 119.25431 * 179.97438 * 5 4 2 7 7 C 1.40854 * 132.86532 * 180.02562 * 6 5 4 8 8 C 1.46571 * 126.57604 * 0.02562 * 7 6 5 9 9 O 1.21720 * 120.00276 * 359.97438 * 8 7 6 10 10 N 1.34779 * 119.99760 * 179.97438 * 8 7 6 11 11 C 1.46499 * 119.99814 * 179.97438 * 10 8 7 12 12 H 1.08999 * 112.85080 * 334.66685 * 11 10 8 13 13 C 1.53781 * 113.61142 * 105.86449 * 11 10 8 14 14 C 1.53958 * 87.01958 * 139.94950 * 13 11 10 15 15 H 1.09005 * 113.60999 * 89.19586 * 14 13 11 16 16 C 1.52995 * 113.66972 * 220.06804 * 14 13 11 17 17 N 1.46506 * 109.47065 * 272.56111 * 16 14 13 18 18 C 1.34429 * 126.82465 * 124.70868 * 17 16 14 19 19 N 1.30829 * 108.07696 * 179.89531 * 18 17 16 20 20 C 1.33246 * 109.83054 * 0.37779 * 19 18 17 21 21 N 1.30712 * 108.94636 * 359.76967 * 20 19 18 22 22 C 1.53777 * 113.61405 * 203.47255 * 11 10 8 23 23 C 1.40554 * 106.84206 * 180.02562 * 7 6 5 24 24 N 1.30742 * 108.74345 * 0.24591 * 23 7 6 25 25 N 1.36583 * 120.23462 * 0.05232 * 6 5 4 26 26 C 1.36248 * 120.07620 * 359.97438 * 25 6 5 27 27 C 1.35193 * 120.70487 * 0.02562 * 26 25 6 28 28 H 0.96699 * 114.00343 * 299.99694 * 1 2 3 29 29 H 1.09001 * 109.47532 * 119.99773 * 2 1 3 30 30 H 1.48500 * 109.99731 * 299.99837 * 3 2 1 31 31 H 1.48491 * 109.99985 * 61.31906 * 3 2 1 32 32 H 1.07994 * 120.36795 * 0.05890 * 5 4 2 33 33 H 0.97005 * 120.00034 * 0.02562 * 10 8 7 34 34 H 1.09003 * 113.61553 * 254.52818 * 13 11 10 35 35 H 1.09001 * 113.61771 * 25.43606 * 13 11 10 36 36 H 1.08999 * 109.47191 * 32.55708 * 16 14 13 37 37 H 1.09001 * 109.47328 * 152.56493 * 16 14 13 38 38 H 1.08000 * 125.95587 * 0.04080 * 18 17 16 39 39 H 1.08001 * 125.52462 * 179.72878 * 20 19 18 40 40 H 1.08999 * 113.61538 * 334.56724 * 22 11 10 41 41 H 1.09000 * 113.61823 * 105.39038 * 22 11 10 42 42 H 1.08002 * 125.62408 * 179.97438 * 23 7 6 43 43 H 1.07992 * 119.64618 * 179.97438 * 26 25 6 44 44 H 1.08000 * 119.83253 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0499 1.7565 0.0000 4 6 1.9314 -0.7103 -1.2305 5 6 2.7173 -1.8195 -1.1123 6 6 3.1718 -2.4631 -2.2706 7 6 3.9762 -3.5998 -2.4823 8 6 4.5775 -4.4488 -1.4499 9 8 4.3989 -4.1949 -0.2730 10 7 5.3283 -5.5107 -1.8038 11 6 5.9298 -6.3590 -0.7719 12 1 6.0857 -5.8334 0.1703 13 6 5.2327 -7.7201 -0.6100 14 6 6.6369 -8.3290 -0.4436 15 1 6.9867 -8.3440 0.5887 16 6 6.8100 -9.6755 -1.1492 17 7 6.3887 -10.7546 -0.2523 18 6 5.4686 -11.7010 -0.5070 19 7 5.3830 -12.4769 0.5428 20 6 6.2232 -12.0546 1.4868 21 7 6.8615 -11.0021 1.0469 22 6 7.1658 -7.1352 -1.2559 23 6 4.0917 -3.7636 -3.8735 24 7 3.4225 -2.8093 -4.4659 25 7 2.8312 -1.9826 -3.5030 26 6 2.0464 -0.8741 -3.6106 27 6 1.5965 -0.2369 -2.5064 28 1 -0.3934 0.4416 0.7650 29 1 1.7924 -0.5138 0.8900 30 1 1.5613 2.4679 -1.2085 31 1 1.5878 2.4586 1.2242 32 1 2.9848 -2.1977 -0.1368 33 1 5.4710 -5.7128 -2.7417 34 1 4.6160 -7.7910 0.2861 35 1 4.7152 -8.0553 -1.5088 36 1 6.1991 -9.6939 -2.0517 37 1 7.8576 -9.8135 -1.4166 38 1 4.9011 -11.8042 -1.4201 39 1 6.3548 -12.5078 2.4582 40 1 7.1778 -7.3103 -2.3317 41 1 8.1077 -6.7339 -0.8819 42 1 4.6457 -4.5460 -4.3710 43 1 1.7817 -0.4999 -4.5885 44 1 0.9749 0.6404 -2.6082 There are 64 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 64 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14644236_11618758.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 00:05:41 Heat of formation + Delta-G solvation = 164.240515 kcal Electronic energy + Delta-G solvation = -29815.265778 eV Core-core repulsion = 25546.397474 eV Total energy + Delta-G solvation = -4268.868304 eV No. of doubly occupied orbitals = 64 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 355.143 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -43.31323 -42.95917 -41.00215 -39.47422 -39.06047 -37.39438 -35.38759 -34.34944 -33.84397 -32.18420 -32.14334 -30.44936 -28.92674 -27.32314 -26.69722 -25.33930 -24.43515 -23.48730 -22.96229 -22.90080 -22.10552 -21.36683 -20.44899 -19.16656 -18.53272 -18.39458 -17.93812 -17.52847 -17.19155 -16.95505 -16.78794 -16.51161 -16.24595 -15.90494 -15.75135 -15.63740 -15.56624 -15.11894 -14.95276 -14.45017 -14.36982 -14.13691 -14.04097 -13.63717 -13.41763 -13.30733 -13.14682 -13.04368 -12.71454 -12.65052 -12.33554 -12.12255 -11.96133 -11.82947 -11.62598 -11.47336 -10.98508 -10.92003 -10.85623 -10.76881 -10.48791 -10.26276 -10.01559 -8.79940 -4.91843 -0.59581 -0.13624 0.72590 1.00759 1.03882 1.19900 1.48501 1.59294 1.85336 2.03148 2.04372 2.27372 2.47988 3.00210 3.16854 3.42863 3.49499 3.51637 3.53751 3.56197 3.62400 3.70442 3.82997 3.86066 3.93692 3.98919 4.16710 4.18795 4.22089 4.33419 4.37119 4.47786 4.55369 4.56895 4.72894 4.74899 4.83379 4.84842 4.98764 5.07937 5.10325 5.14796 5.27197 5.30586 5.33832 5.47902 5.63011 5.64782 5.98222 6.29319 6.50827 6.65509 7.15428 7.33795 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.551 6.551 2 C -0.088 4.088 3 Si 0.765 3.235 4 C -0.020 4.020 5 C -0.113 4.113 6 C 0.150 3.850 7 C -0.338 4.338 8 C 0.598 3.402 9 O -0.594 6.594 10 N -0.701 5.701 11 C 0.122 3.878 12 H 0.086 0.914 13 C -0.143 4.143 14 C -0.115 4.115 15 H 0.080 0.920 16 C 0.135 3.865 17 N -0.377 5.377 18 C 0.256 3.744 19 N -0.586 5.586 20 C 0.185 3.815 21 N -0.350 5.350 22 C -0.114 4.114 23 C 0.134 3.866 24 N -0.339 5.339 25 N -0.274 5.274 26 C 0.114 3.886 27 C -0.148 4.148 28 H 0.400 0.600 29 H 0.093 0.907 30 H -0.273 1.273 31 H -0.276 1.276 32 H 0.154 0.846 33 H 0.417 0.583 34 H 0.041 0.959 35 H 0.109 0.891 36 H 0.143 0.857 37 H 0.102 0.898 38 H 0.258 0.742 39 H 0.231 0.769 40 H 0.126 0.874 41 H 0.082 0.918 42 H 0.240 0.760 43 H 0.204 0.796 44 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.068 3.087 -5.800 6.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.362 6.362 2 C -0.195 4.195 3 Si 0.665 3.335 4 C -0.025 4.025 5 C -0.133 4.133 6 C 0.029 3.971 7 C -0.352 4.352 8 C 0.389 3.611 9 O -0.476 6.476 10 N -0.352 5.352 11 C 0.017 3.983 12 H 0.104 0.896 13 C -0.182 4.182 14 C -0.135 4.135 15 H 0.098 0.902 16 C 0.015 3.985 17 N -0.167 5.167 18 C -0.040 4.040 19 N -0.315 5.315 20 C -0.118 4.118 21 N -0.179 5.179 22 C -0.153 4.153 23 C -0.047 4.047 24 N -0.160 5.160 25 N -0.037 5.037 26 C -0.012 4.012 27 C -0.169 4.169 28 H 0.252 0.748 29 H 0.111 0.889 30 H -0.199 1.199 31 H -0.201 1.201 32 H 0.172 0.828 33 H 0.254 0.746 34 H 0.060 0.940 35 H 0.127 0.873 36 H 0.160 0.840 37 H 0.120 0.880 38 H 0.274 0.726 39 H 0.247 0.753 40 H 0.144 0.856 41 H 0.101 0.899 42 H 0.256 0.744 43 H 0.220 0.780 44 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges 1.905 4.367 -6.399 7.978 hybrid contribution -1.061 -0.585 1.243 1.736 sum 0.844 3.781 -5.157 6.450 Atomic orbital electron populations 1.86522 1.17340 1.80961 1.51351 1.24958 0.84900 1.12415 0.97234 0.93502 0.90714 0.70871 0.78425 1.19594 0.94297 0.93432 0.95223 1.20629 0.99980 0.94890 0.97797 1.19547 0.96091 0.94841 0.86650 1.19700 1.17094 1.04058 0.94373 1.17061 0.77433 0.79910 0.86745 1.90758 1.63147 1.73332 1.20371 1.45493 1.51299 1.27691 1.10683 1.22355 0.94596 0.89030 0.92358 0.89583 1.23614 0.96296 0.95793 1.02484 1.22555 0.97329 0.93180 1.00473 0.90197 1.22238 1.03778 0.81829 0.90639 1.50762 1.29981 1.24427 1.11571 1.26869 0.91404 0.85558 1.00169 1.70537 1.26819 1.31592 1.02506 1.26435 0.92097 0.92275 1.00956 1.77951 1.24890 1.20410 0.94631 1.23307 0.96954 0.92694 1.02326 1.24670 0.93343 0.95668 0.91034 1.77574 1.19555 1.07318 1.11528 1.46286 1.32333 1.19576 1.05527 1.22115 0.91370 0.84529 1.03196 1.21035 1.02839 1.03004 0.90009 0.74835 0.88911 1.19865 1.20131 0.82794 0.74551 0.93970 0.87273 0.83961 0.87968 0.72600 0.75332 0.85614 0.89911 0.74386 0.77959 0.80674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 0.26 12.76 -148.98 -1.90 -1.64 16 2 C -0.09 0.18 2.81 71.24 0.20 0.38 16 3 Si 0.76 -3.45 31.97 68.60 2.19 -1.25 16 4 C -0.02 -0.03 4.53 -19.82 -0.09 -0.12 16 5 C -0.11 -0.58 9.35 22.30 0.21 -0.38 16 6 C 0.15 1.01 6.76 39.49 0.27 1.27 16 7 C -0.34 -1.55 6.17 -19.90 -0.12 -1.67 16 8 C 0.60 3.48 7.78 86.42 0.67 4.15 16 9 O -0.59 -8.40 15.32 -4.41 -0.07 -8.47 16 10 N -0.70 2.12 5.35 -444.09 -2.38 -0.25 16 11 C 0.12 -0.29 4.21 45.52 0.19 -0.10 16 12 H 0.09 0.37 7.50 -2.39 -0.02 0.35 16 13 C -0.14 0.49 7.45 31.18 0.23 0.72 16 14 C -0.12 0.63 3.88 -10.21 -0.04 0.59 16 15 H 0.08 0.08 8.00 -2.38 -0.02 0.07 16 16 C 0.14 -1.15 6.39 86.38 0.55 -0.59 16 17 N -0.38 0.05 3.69 -352.06 -1.30 -1.25 16 18 C 0.26 -0.18 12.63 180.36 2.28 2.10 16 19 N -0.59 -3.89 11.19 -204.00 -2.28 -6.17 16 20 C 0.18 1.15 13.03 180.76 2.36 3.51 16 21 N -0.35 -2.38 12.45 -61.24 -0.76 -3.15 16 22 C -0.11 1.06 7.39 31.12 0.23 1.29 16 23 C 0.13 -0.09 11.44 85.42 0.98 0.89 16 24 N -0.34 -1.46 12.57 -56.62 -0.71 -2.17 16 25 N -0.27 -1.28 3.86 -187.27 -0.72 -2.01 16 26 C 0.11 -0.06 11.18 83.30 0.93 0.88 16 27 C -0.15 0.15 8.67 22.03 0.19 0.34 16 28 H 0.40 -3.34 8.74 -74.06 -0.65 -3.99 16 29 H 0.09 -0.38 7.71 -2.39 -0.02 -0.39 16 30 H -0.27 0.06 7.07 99.48 0.70 0.76 16 31 H -0.28 0.13 7.11 99.48 0.71 0.83 16 32 H 0.15 1.00 7.01 -2.91 -0.02 0.98 16 33 H 0.42 -4.54 7.63 -92.70 -0.71 -5.25 16 34 H 0.04 0.14 8.14 -2.39 -0.02 0.12 16 35 H 0.11 -0.86 7.90 -2.39 -0.02 -0.88 16 36 H 0.14 -2.31 7.80 -2.39 -0.02 -2.33 16 37 H 0.10 -0.99 8.14 -2.39 -0.02 -1.01 16 38 H 0.26 -2.87 8.06 -2.91 -0.02 -2.89 16 39 H 0.23 0.13 8.06 -2.91 -0.02 0.11 16 40 H 0.13 -1.97 8.07 -2.39 -0.02 -1.99 16 41 H 0.08 -0.67 8.14 -2.39 -0.02 -0.69 16 42 H 0.24 -2.76 7.46 -2.91 -0.02 -2.79 16 43 H 0.20 -1.39 8.06 -2.91 -0.02 -1.41 16 44 H 0.18 -0.82 7.53 -2.91 -0.02 -0.84 16 Total: 0.00 -35.20 380.94 0.85 -34.34 By element: Atomic # 1 Polarization: -20.99 SS G_CDS: -0.25 Total: -21.24 kcal Atomic # 6 Polarization: 4.23 SS G_CDS: 9.03 Total: 13.27 kcal Atomic # 7 Polarization: -6.85 SS G_CDS: -8.16 Total: -15.01 kcal Atomic # 8 Polarization: -8.14 SS G_CDS: -1.97 Total: -10.11 kcal Atomic # 14 Polarization: -3.45 SS G_CDS: 2.19 Total: -1.25 kcal Total: -35.20 0.85 -34.34 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14644236_11618758.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 198.583 kcal (2) G-P(sol) polarization free energy of solvation -35.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 163.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.343 kcal (6) G-S(sol) free energy of system = (1) + (5) 164.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds