Wall clock time and date at job start Sun Mar 7 2021 00:05:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35656 * 117.00275 * 2 1 4 4 C 1.38403 * 120.11742 * 0.02562 * 3 2 1 5 5 C 1.38733 * 120.03089 * 180.02562 * 4 3 2 6 6 O 1.35712 * 119.86130 * 179.97438 * 5 4 3 7 7 C 1.42900 * 117.00373 * 359.97438 * 6 5 4 8 8 C 1.39145 * 120.27204 * 359.97438 * 5 4 3 9 9 C 1.50698 * 119.87838 * 179.97438 * 8 5 4 10 10 O 1.42894 * 109.47242 * 285.00606 * 9 8 5 11 11 Si 1.86301 * 109.47039 * 164.99981 * 9 8 5 12 12 C 1.37580 * 120.24264 * 359.74462 * 8 5 4 13 13 C 1.39829 * 119.96217 * 0.53214 * 12 8 5 14 14 C 1.47296 * 120.13497 * 179.74539 * 13 12 8 15 15 O 1.21619 * 119.99866 * 179.72401 * 14 13 12 16 16 N 1.34778 * 120.00178 * 359.72121 * 14 13 12 17 17 C 1.46493 * 120.00221 * 179.97438 * 16 14 13 18 18 H 1.09004 * 112.90582 * 336.25507 * 17 16 14 19 19 C 1.53787 * 113.61486 * 107.50176 * 17 16 14 20 20 C 1.53784 * 87.07956 * 139.98420 * 19 17 16 21 21 H 1.09004 * 113.69128 * 89.12846 * 20 19 17 22 22 C 1.53001 * 113.61251 * 220.02333 * 20 19 17 23 23 N 1.46506 * 109.46688 * 272.49632 * 22 20 19 24 24 C 1.34424 * 126.82028 * 125.00386 * 23 22 20 25 25 N 1.30835 * 108.07649 * 179.97438 * 24 23 22 26 26 C 1.33238 * 109.83029 * 0.02562 * 25 24 23 27 27 N 1.30712 * 108.94316 * 359.75029 * 26 25 24 28 28 C 1.53780 * 113.61730 * 205.00363 * 17 16 14 29 29 H 1.09007 * 109.46914 * 300.00050 * 1 2 3 30 30 H 1.09002 * 109.47315 * 59.99548 * 1 2 3 31 31 H 1.09001 * 109.46981 * 180.02562 * 1 2 3 32 32 H 1.07998 * 119.98608 * 359.97438 * 4 3 2 33 33 H 1.08997 * 109.47125 * 179.97438 * 7 6 5 34 34 H 1.08996 * 109.47342 * 300.00441 * 7 6 5 35 35 H 1.09002 * 109.46731 * 60.00012 * 7 6 5 36 36 H 1.09002 * 109.46867 * 45.00382 * 9 8 5 37 37 H 0.96705 * 113.99990 * 180.02562 * 10 9 8 38 38 H 1.48493 * 110.00197 * 298.68570 * 11 9 8 39 39 H 1.48504 * 109.99648 * 60.00609 * 11 9 8 40 40 H 1.08000 * 120.02535 * 180.27716 * 12 8 5 41 41 H 0.97003 * 119.99446 * 0.02562 * 16 14 13 42 42 H 1.08992 * 113.60810 * 25.43402 * 19 17 16 43 43 H 1.08995 * 113.61392 * 254.53324 * 19 17 16 44 44 H 1.08999 * 109.47230 * 152.49717 * 22 20 19 45 45 H 1.09000 * 109.47236 * 32.49312 * 22 20 19 46 46 H 1.07996 * 125.96633 * 359.92153 * 24 23 22 47 47 H 1.07993 * 125.52851 * 180.02562 * 26 25 24 48 48 H 1.08997 * 113.61849 * 105.47370 * 28 17 16 49 49 H 1.09003 * 113.68840 * 334.57649 * 28 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2087 0.0000 4 6 1.2936 2.3710 0.0005 5 6 1.9253 3.6061 0.0000 6 8 1.1852 4.7437 0.0000 7 6 -0.2358 4.5932 0.0000 8 6 3.3146 3.6834 -0.0005 9 6 3.9917 5.0297 -0.0017 10 8 3.8936 5.6111 -1.3033 11 14 5.7866 4.8226 0.4524 12 6 4.0725 2.5351 0.0047 13 6 3.4462 1.2850 -0.0006 14 6 4.2539 0.0532 -0.0006 15 8 3.7065 -1.0328 -0.0001 16 7 5.5995 0.1297 -0.0012 17 6 6.4028 -1.0953 -0.0006 18 1 5.8670 -1.9538 0.4045 19 6 7.0945 -1.3791 -1.3445 20 6 8.3196 -1.8266 -0.5299 21 1 8.3093 -2.8849 -0.2689 22 6 9.6527 -1.3756 -1.1301 23 7 10.1120 -2.3708 -2.1023 24 6 10.4346 -2.1513 -3.3887 25 7 10.7961 -3.2923 -3.9170 26 6 10.7171 -4.2587 -3.0032 27 7 10.3074 -3.7427 -1.8742 28 6 7.8087 -0.9099 0.5942 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 0.2150 2.3165 0.0005 33 1 -0.7054 5.5768 0.0005 34 1 -0.5431 4.0439 -0.8899 35 1 -0.5430 4.0439 0.8900 36 1 3.5059 5.6812 0.7248 37 1 4.3093 6.4810 -1.3779 38 1 5.9023 4.2483 1.8169 39 1 6.4601 3.9363 -0.5305 40 1 5.1506 2.5992 0.0088 41 1 6.0360 0.9960 -0.0012 42 1 7.2705 -0.4848 -1.9422 43 1 6.6301 -2.1848 -1.9130 44 1 10.3929 -1.2745 -0.3364 45 1 9.5206 -0.4152 -1.6282 46 1 10.4004 -1.1993 -3.8976 47 1 10.9572 -5.2987 -3.1673 48 1 7.9210 -1.3369 1.5908 49 1 8.1812 0.1123 0.5273 There are 69 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 69 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14644236_12297780.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 00:05:48 Heat of formation + Delta-G solvation = 21.235977 kcal Electronic energy + Delta-G solvation = -34280.841497 eV Core-core repulsion = 29600.174151 eV Total energy + Delta-G solvation = -4680.667346 eV No. of doubly occupied orbitals = 69 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 375.167 amu Computer time = 1.46 seconds Orbital eigenvalues (eV) -43.00511 -42.22157 -41.11305 -40.20023 -39.41646 -38.37900 -37.07287 -35.52073 -34.13539 -32.44732 -32.18345 -31.81605 -29.15122 -29.03430 -28.17763 -26.83248 -26.11008 -25.35052 -24.09939 -22.99322 -22.91770 -22.15084 -21.68268 -20.63143 -20.06764 -18.73809 -18.53055 -18.35575 -18.10383 -17.53580 -17.17093 -17.06106 -16.65988 -16.59504 -16.47021 -16.31563 -15.93524 -15.89527 -15.82406 -15.45573 -15.28486 -15.06579 -14.55484 -14.41757 -14.19889 -13.92908 -13.78842 -13.72719 -13.57952 -13.52767 -13.23323 -12.78521 -12.75627 -12.62396 -12.59518 -12.43405 -12.17350 -11.94224 -11.90992 -11.75065 -11.59714 -11.09019 -10.98544 -10.80826 -10.55157 -10.21878 -10.20215 -10.03910 -9.30724 -4.88833 -0.40852 -0.05520 0.68577 1.32503 1.42410 1.56974 1.71524 1.95544 1.97018 1.99957 2.01393 2.07909 2.44550 3.24789 3.29246 3.40126 3.40832 3.43322 3.52187 3.58822 3.62009 3.71124 3.83906 3.93478 3.95057 4.07273 4.10758 4.13933 4.14060 4.20021 4.21898 4.25916 4.32905 4.43287 4.47177 4.55766 4.60062 4.62754 4.64191 4.68464 4.71184 4.81076 4.86307 4.94724 4.95043 5.12526 5.16256 5.29057 5.44102 5.45668 5.92964 5.93604 6.17930 6.36129 6.97862 7.08119 7.11592 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.009 3.991 2 O -0.305 6.305 3 C 0.217 3.783 4 C -0.309 4.309 5 C 0.217 3.783 6 O -0.306 6.306 7 C 0.011 3.989 8 C -0.169 4.169 9 C -0.072 4.072 10 O -0.563 6.563 11 Si 0.765 3.235 12 C -0.011 4.011 13 C -0.232 4.232 14 C 0.562 3.438 15 O -0.563 6.563 16 N -0.709 5.709 17 C 0.116 3.884 18 H 0.090 0.910 19 C -0.143 4.143 20 C -0.111 4.111 21 H 0.084 0.916 22 C 0.136 3.864 23 N -0.378 5.378 24 C 0.257 3.743 25 N -0.585 5.585 26 C 0.186 3.814 27 N -0.350 5.350 28 C -0.118 4.118 29 H 0.074 0.926 30 H 0.072 0.928 31 H 0.114 0.886 32 H 0.168 0.832 33 H 0.125 0.875 34 H 0.066 0.934 35 H 0.070 0.930 36 H 0.079 0.921 37 H 0.400 0.600 38 H -0.280 1.280 39 H -0.264 1.264 40 H 0.149 0.851 41 H 0.408 0.592 42 H 0.107 0.893 43 H 0.046 0.954 44 H 0.104 0.896 45 H 0.141 0.859 46 H 0.258 0.742 47 H 0.232 0.768 48 H 0.086 0.914 49 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.312 11.640 2.290 11.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 O -0.215 6.215 3 C 0.167 3.833 4 C -0.329 4.329 5 C 0.168 3.832 6 O -0.218 6.218 7 C -0.083 4.083 8 C -0.170 4.170 9 C -0.181 4.181 10 O -0.373 6.373 11 Si 0.667 3.333 12 C -0.030 4.030 13 C -0.236 4.236 14 C 0.351 3.649 15 O -0.442 6.442 16 N -0.361 5.361 17 C 0.011 3.989 18 H 0.108 0.892 19 C -0.182 4.182 20 C -0.131 4.131 21 H 0.103 0.897 22 C 0.016 3.984 23 N -0.168 5.168 24 C -0.039 4.039 25 N -0.313 5.313 26 C -0.116 4.116 27 N -0.179 5.179 28 C -0.156 4.156 29 H 0.092 0.908 30 H 0.090 0.910 31 H 0.132 0.868 32 H 0.186 0.814 33 H 0.143 0.857 34 H 0.085 0.915 35 H 0.089 0.911 36 H 0.097 0.903 37 H 0.251 0.749 38 H -0.207 1.207 39 H -0.190 1.190 40 H 0.166 0.834 41 H 0.245 0.755 42 H 0.125 0.875 43 H 0.065 0.935 44 H 0.122 0.878 45 H 0.159 0.841 46 H 0.274 0.726 47 H 0.248 0.752 48 H 0.104 0.896 49 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -0.317 9.373 2.792 9.785 hybrid contribution -1.313 -0.239 -0.072 1.336 sum -1.630 9.134 2.720 9.668 Atomic orbital electron populations 1.23508 0.76286 1.05896 1.02798 1.86363 1.23438 1.25746 1.85997 1.18956 0.90931 0.84940 0.88455 1.21474 1.02198 0.90631 1.18557 1.18887 0.90781 0.85177 0.88331 1.86120 1.21154 1.28173 1.86314 1.23514 0.76058 1.06207 1.02559 1.18848 0.90713 0.95517 1.11901 1.24761 1.12255 0.91982 0.89101 1.86462 1.82736 1.39226 1.28852 0.94093 0.74533 0.87832 0.76868 1.20846 0.99456 0.89698 0.92956 1.19156 0.91196 0.93666 1.19615 1.18103 0.82815 0.88301 0.75647 1.90812 1.72361 1.30201 1.50861 1.45783 1.05016 1.10090 1.75259 1.22484 0.90819 0.87684 0.97909 0.89184 1.23582 0.95955 1.01856 0.96770 1.22506 0.92810 1.00530 0.97280 0.89741 1.22204 0.95500 0.89036 0.91687 1.50728 1.48782 1.06469 1.10835 1.26875 0.93582 1.00468 0.83016 1.70543 1.26634 0.99660 1.34440 1.26450 0.97489 1.01637 0.86070 1.77953 1.25094 0.90143 1.24710 1.23337 0.91934 1.01764 0.98608 0.90758 0.90968 0.86774 0.81438 0.85650 0.91549 0.91108 0.90285 0.74898 1.20655 1.19020 0.83372 0.75475 0.87465 0.93473 0.87756 0.84130 0.72613 0.75225 0.89563 0.86097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.00 9.81 113.37 1.11 1.11 16 2 O -0.30 -3.28 8.56 -68.76 -0.59 -3.86 16 3 C 0.22 1.96 6.70 22.82 0.15 2.12 16 4 C -0.31 -1.22 8.01 22.43 0.18 -1.04 16 5 C 0.22 1.01 6.67 22.61 0.15 1.16 16 6 O -0.31 -0.72 9.80 -90.33 -0.89 -1.60 16 7 C 0.01 -0.06 9.80 113.37 1.11 1.06 16 8 C -0.17 -0.73 5.31 -19.80 -0.11 -0.84 16 9 C -0.07 0.09 2.36 71.24 0.17 0.26 16 10 O -0.56 0.44 12.86 -148.98 -1.92 -1.47 16 11 Si 0.76 -4.93 30.18 68.60 2.07 -2.86 16 12 C -0.01 -0.05 8.14 22.50 0.18 0.13 16 13 C -0.23 -2.09 5.89 -20.00 -0.12 -2.21 16 14 C 0.56 6.32 7.76 86.63 0.67 7.00 16 15 O -0.56 -11.04 14.75 16.87 0.25 -10.79 16 16 N -0.71 -2.08 5.30 -443.42 -2.35 -4.43 16 17 C 0.12 0.19 4.24 45.52 0.19 0.39 16 18 H 0.09 0.72 7.47 -2.38 -0.02 0.70 16 19 C -0.14 0.07 7.43 31.12 0.23 0.30 16 20 C -0.11 0.36 3.88 -10.26 -0.04 0.32 16 21 H 0.08 0.23 8.01 -2.38 -0.02 0.21 16 22 C 0.14 -0.92 6.39 86.38 0.55 -0.36 16 23 N -0.38 -0.39 3.69 -352.05 -1.30 -1.69 16 24 C 0.26 0.06 12.63 180.36 2.28 2.34 16 25 N -0.58 -4.28 11.19 -204.01 -2.28 -6.56 16 26 C 0.19 1.28 13.03 180.77 2.36 3.64 16 27 N -0.35 -2.69 12.46 -61.25 -0.76 -3.46 16 28 C -0.12 0.69 7.39 31.12 0.23 0.92 16 29 H 0.07 -0.25 7.66 -2.38 -0.02 -0.27 16 30 H 0.07 -0.21 7.66 -2.39 -0.02 -0.23 16 31 H 0.11 -0.19 8.14 -2.39 -0.02 -0.21 16 32 H 0.17 -0.33 4.50 -2.91 -0.01 -0.34 16 33 H 0.13 -1.13 8.14 -2.39 -0.02 -1.15 16 34 H 0.07 -0.42 7.65 -2.39 -0.02 -0.44 16 35 H 0.07 -0.53 7.65 -2.39 -0.02 -0.55 16 36 H 0.08 -0.22 7.82 -2.39 -0.02 -0.24 16 37 H 0.40 -4.51 8.74 -74.05 -0.65 -5.16 16 38 H -0.28 0.42 7.11 99.48 0.71 1.13 16 39 H -0.26 1.08 6.75 99.48 0.67 1.75 16 40 H 0.15 -0.09 3.20 -2.91 -0.01 -0.10 16 41 H 0.41 -1.22 6.75 -92.71 -0.63 -1.84 16 42 H 0.11 -0.49 7.90 -2.39 -0.02 -0.51 16 43 H 0.05 0.26 8.14 -2.39 -0.02 0.24 16 44 H 0.10 -0.87 8.14 -2.39 -0.02 -0.89 16 45 H 0.14 -2.00 7.79 -2.39 -0.02 -2.01 16 46 H 0.26 -2.61 8.06 -2.91 -0.02 -2.63 16 47 H 0.23 0.26 8.06 -2.91 -0.02 0.24 16 48 H 0.09 -0.46 8.14 -2.39 -0.02 -0.48 16 49 H 0.12 -1.41 8.08 -2.39 -0.02 -1.43 16 Total: 0.00 -35.94 405.73 1.29 -34.65 By element: Atomic # 1 Polarization: -13.97 SS G_CDS: -0.25 Total: -14.21 kcal Atomic # 6 Polarization: 6.99 SS G_CDS: 9.31 Total: 16.30 kcal Atomic # 7 Polarization: -9.44 SS G_CDS: -6.70 Total: -16.14 kcal Atomic # 8 Polarization: -14.59 SS G_CDS: -3.14 Total: -17.73 kcal Atomic # 14 Polarization: -4.93 SS G_CDS: 2.07 Total: -2.86 kcal Total: -35.94 1.29 -34.65 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14644236_12297780.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.882 kcal (2) G-P(sol) polarization free energy of solvation -35.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.646 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.46 seconds