Wall clock time and date at job start Sun Mar 7 2021 00:05:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42895 * 1 3 3 Si 1.86300 * 109.46999 * 2 1 4 4 C 1.50696 * 109.47616 * 240.00191 * 2 1 3 5 5 C 1.38237 * 120.00126 * 299.99834 * 4 2 1 6 6 C 1.38225 * 120.00652 * 179.97438 * 5 4 2 7 7 C 1.38240 * 119.99925 * 359.97438 * 6 5 4 8 8 C 1.50695 * 120.00153 * 179.97438 * 7 6 5 9 9 C 1.50706 * 109.47111 * 90.00047 * 8 7 6 10 10 O 1.21281 * 119.99922 * 359.97438 * 9 8 7 11 11 N 1.34779 * 119.99749 * 179.97438 * 9 8 7 12 12 C 1.46494 * 119.99525 * 179.97438 * 11 9 8 13 13 H 1.09000 * 112.91148 * 23.75262 * 12 11 9 14 14 C 1.53786 * 113.61370 * 155.00031 * 12 11 9 15 15 C 1.53781 * 87.17350 * 140.02367 * 14 12 11 16 16 H 1.09003 * 113.61462 * 89.16045 * 15 14 12 17 17 C 1.52991 * 113.61529 * 219.97788 * 15 14 12 18 18 N 1.46508 * 109.47429 * 184.99923 * 17 15 14 19 19 C 1.34426 * 126.81984 * 124.70705 * 18 17 15 20 20 N 1.30840 * 108.07312 * 179.89701 * 19 18 17 21 21 C 1.33244 * 109.82711 * 0.38357 * 20 19 18 22 22 N 1.30709 * 108.94622 * 359.76066 * 21 20 19 23 23 C 1.53781 * 87.08070 * 334.52830 * 15 14 12 24 24 C 1.38242 * 119.99775 * 0.27571 * 7 6 5 25 25 C 1.38236 * 120.00357 * 119.97231 * 4 2 1 26 26 H 0.96695 * 114.00500 * 299.99734 * 1 2 3 27 27 H 1.09001 * 109.47756 * 119.99682 * 2 1 3 28 28 H 1.48498 * 110.00432 * 178.67844 * 3 2 1 29 29 H 1.48504 * 110.00144 * 300.00259 * 3 2 1 30 30 H 1.08006 * 119.99767 * 359.97438 * 5 4 2 31 31 H 1.07993 * 120.00603 * 179.97438 * 6 5 4 32 32 H 1.09001 * 109.47391 * 330.00244 * 8 7 6 33 33 H 1.09005 * 109.47262 * 209.99980 * 8 7 6 34 34 H 0.97000 * 119.99938 * 359.97438 * 11 9 8 35 35 H 1.09002 * 113.61357 * 25.43283 * 14 12 11 36 36 H 1.09002 * 113.61608 * 254.61445 * 14 12 11 37 37 H 1.08997 * 109.47550 * 304.99814 * 17 15 14 38 38 H 1.09002 * 109.47334 * 65.00084 * 17 15 14 39 39 H 1.07996 * 125.96554 * 0.04585 * 19 18 17 40 40 H 1.07996 * 125.52605 * 179.73024 * 21 20 19 41 41 H 1.09005 * 113.61471 * 139.98321 * 23 15 14 42 42 H 1.08996 * 113.61178 * 270.79663 * 23 15 14 43 43 H 1.07995 * 119.99872 * 179.72703 * 24 7 6 44 44 H 1.07998 * 119.99846 * 0.02562 * 25 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0499 1.7565 0.0000 4 6 1.9314 -0.7103 -1.2304 5 6 1.5976 -2.0338 -1.4493 6 6 2.0579 -2.6853 -2.5781 7 6 2.8518 -2.0132 -3.4886 8 6 3.3542 -2.7236 -4.7189 9 6 2.3610 -2.5513 -5.8392 10 8 1.3450 -1.9148 -5.6563 11 7 2.6019 -3.1047 -7.0444 12 6 1.6361 -2.9377 -8.1331 13 1 1.0071 -2.0559 -8.0109 14 6 2.2594 -3.0602 -9.5337 15 6 0.9977 -3.8378 -9.9439 16 1 0.1949 -3.2018 -10.3171 17 6 1.2833 -5.0314 -10.8572 18 7 0.0176 -5.6316 -11.2868 19 6 -0.3846 -5.8447 -12.5516 20 7 -1.5687 -6.3999 -12.5129 21 6 -1.9569 -6.5487 -11.2470 22 7 -1.0189 -6.0929 -10.4591 23 6 0.8459 -4.2186 -8.4617 24 6 3.1900 -0.6912 -3.2672 25 6 2.7257 -0.0384 -2.1406 26 1 -0.3934 0.4416 0.7650 27 1 1.7924 -0.5138 0.8900 28 1 3.5345 1.7704 0.0322 29 1 1.5613 2.4680 -1.2085 30 1 0.9769 -2.5589 -0.7381 31 1 1.7975 -3.7194 -2.7488 32 1 3.4762 -3.7847 -4.5015 33 1 4.3140 -2.3009 -5.0161 34 1 3.4147 -3.6134 -7.1907 35 1 3.1688 -3.6607 -9.5558 36 1 2.3701 -2.1053 -10.0474 37 1 1.8409 -4.6950 -11.7313 38 1 1.8707 -5.7720 -10.3144 39 1 0.1733 -5.6023 -13.4440 40 1 -2.8947 -6.9761 -10.9243 41 1 -0.1853 -4.1982 -8.1090 42 1 1.3676 -5.1365 -8.1912 43 1 3.8138 -0.1674 -3.9763 44 1 2.9865 0.9956 -1.9697 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14644236_12335836.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 00:05:56 Heat of formation + Delta-G solvation = 78.834907 kcal Electronic energy + Delta-G solvation = -26453.879950 eV Core-core repulsion = 22568.612284 eV Total energy + Delta-G solvation = -3885.267666 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 329.153 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -42.98921 -41.44012 -40.58106 -39.45126 -37.64688 -35.46509 -34.37949 -33.84321 -32.17047 -32.11553 -30.13043 -28.82799 -26.74894 -25.96418 -24.32759 -24.00918 -22.87314 -22.62900 -21.93439 -21.50414 -20.65204 -18.43638 -18.40369 -18.11531 -17.79888 -17.20611 -16.96257 -16.75430 -16.45263 -16.14385 -15.96360 -15.72130 -15.25033 -15.09815 -14.99176 -14.86627 -14.58247 -14.43420 -13.88700 -13.73149 -13.52845 -13.47332 -13.30991 -13.18937 -12.98786 -12.83575 -12.38418 -12.23708 -12.11103 -11.93920 -11.86728 -11.43801 -11.05060 -10.98123 -10.80367 -10.58301 -10.38260 -10.07970 -10.04777 -9.70035 -5.00027 0.08395 0.27657 0.69764 1.25837 1.45093 1.55698 1.58194 1.93568 2.00145 2.11701 2.64243 3.28997 3.38191 3.42534 3.52929 3.53583 3.61356 3.68902 3.73496 3.79442 3.91055 3.92911 3.96192 4.10892 4.19637 4.22631 4.29741 4.32600 4.42370 4.51527 4.55655 4.57671 4.68611 4.70120 4.78143 4.88130 4.92725 4.95292 5.01659 5.17255 5.20826 5.33401 5.38039 5.42892 5.44733 5.54196 5.86056 5.94864 6.51932 6.86772 7.12795 7.23205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.566 6.566 2 C -0.081 4.081 3 Si 0.779 3.221 4 C -0.097 4.097 5 C -0.103 4.103 6 C -0.113 4.113 7 C -0.072 4.072 8 C -0.096 4.096 9 C 0.510 3.490 10 O -0.586 6.586 11 N -0.705 5.705 12 C 0.113 3.887 13 H 0.081 0.919 14 C -0.111 4.111 15 C -0.113 4.113 16 H 0.080 0.920 17 C 0.135 3.865 18 N -0.379 5.379 19 C 0.256 3.744 20 N -0.586 5.586 21 C 0.183 3.817 22 N -0.345 5.345 23 C -0.135 4.135 24 C -0.111 4.111 25 C -0.146 4.146 26 H 0.403 0.597 27 H 0.097 0.903 28 H -0.283 1.283 29 H -0.306 1.306 30 H 0.134 0.866 31 H 0.140 0.860 32 H 0.135 0.865 33 H 0.135 0.865 34 H 0.421 0.579 35 H 0.124 0.876 36 H 0.087 0.913 37 H 0.145 0.855 38 H 0.102 0.898 39 H 0.260 0.740 40 H 0.229 0.771 41 H 0.039 0.961 42 H 0.095 0.905 43 H 0.139 0.861 44 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.749 -0.998 -0.331 8.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.376 6.376 2 C -0.191 4.191 3 Si 0.685 3.315 4 C -0.097 4.097 5 C -0.121 4.121 6 C -0.130 4.130 7 C -0.072 4.072 8 C -0.135 4.135 9 C 0.298 3.702 10 O -0.466 6.466 11 N -0.357 5.357 12 C 0.007 3.993 13 H 0.100 0.900 14 C -0.149 4.149 15 C -0.132 4.132 16 H 0.098 0.902 17 C 0.015 3.985 18 N -0.170 5.170 19 C -0.040 4.040 20 N -0.314 5.314 21 C -0.120 4.120 22 N -0.174 5.174 23 C -0.174 4.174 24 C -0.129 4.129 25 C -0.164 4.164 26 H 0.254 0.746 27 H 0.114 0.886 28 H -0.210 1.210 29 H -0.234 1.234 30 H 0.152 0.848 31 H 0.158 0.842 32 H 0.153 0.847 33 H 0.153 0.847 34 H 0.259 0.741 35 H 0.142 0.858 36 H 0.106 0.894 37 H 0.163 0.837 38 H 0.120 0.880 39 H 0.276 0.724 40 H 0.245 0.755 41 H 0.058 0.942 42 H 0.114 0.886 43 H 0.156 0.844 44 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 8.462 -0.344 -0.622 8.492 hybrid contribution -0.114 -0.476 -0.290 0.569 sum 8.347 -0.820 -0.912 8.437 Atomic orbital electron populations 1.86456 1.17417 1.82391 1.51375 1.24878 0.85765 1.11140 0.97311 0.94545 0.77284 0.75228 0.84424 1.19738 0.98400 0.95113 0.96482 1.21170 0.98756 0.93994 0.98223 1.21351 0.96739 1.01000 0.93951 1.19615 0.97780 0.94050 0.95787 1.20773 0.98937 1.04540 0.89293 1.21095 0.86886 0.77766 0.84428 1.90759 1.30276 1.42466 1.83053 1.45831 1.24816 1.54813 1.10225 1.22469 0.91928 0.98157 0.86733 0.90045 1.23287 0.97411 1.01708 0.92543 1.22491 0.99587 0.96712 0.94460 0.90173 1.22224 0.79882 0.94385 1.02006 1.50787 1.15907 1.45343 1.04974 1.26927 0.92182 0.94090 0.90778 1.70544 1.13797 1.23905 1.23124 1.26431 1.00287 0.98567 0.86714 1.78011 0.99011 1.20752 1.19576 1.23471 0.99854 0.98381 0.95676 1.21156 1.00289 0.94602 0.96860 1.20989 1.00527 0.98884 0.95981 0.74587 0.88569 1.21050 1.23417 0.84768 0.84197 0.84730 0.84712 0.74094 0.85826 0.89392 0.83734 0.88003 0.72415 0.75523 0.94232 0.88616 0.84360 0.86875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.57 -2.25 12.74 -148.98 -1.90 -4.15 16 2 C -0.08 -0.26 2.81 71.23 0.20 -0.06 16 3 Si 0.78 0.91 29.79 68.60 2.04 2.95 16 4 C -0.10 -0.89 5.42 -19.87 -0.11 -1.00 16 5 C -0.10 -0.85 9.61 22.27 0.21 -0.64 16 6 C -0.11 -0.71 9.70 22.27 0.22 -0.49 16 7 C -0.07 -0.36 4.37 -19.86 -0.09 -0.45 16 8 C -0.10 0.30 5.83 29.10 0.17 0.47 16 9 C 0.51 1.66 7.82 87.66 0.69 2.34 16 10 O -0.59 -9.03 15.64 -3.03 -0.05 -9.07 16 11 N -0.70 2.76 5.36 -439.60 -2.36 0.41 16 12 C 0.11 -0.17 4.25 45.61 0.19 0.02 16 13 H 0.08 0.48 7.47 -2.39 -0.02 0.46 16 14 C -0.11 1.07 7.39 31.12 0.23 1.30 16 15 C -0.11 0.62 3.85 -10.27 -0.04 0.58 16 16 H 0.08 -0.09 8.14 -2.39 -0.02 -0.11 16 17 C 0.14 -1.19 6.39 86.37 0.55 -0.64 16 18 N -0.38 0.15 3.69 -352.06 -1.30 -1.15 16 19 C 0.26 -0.28 12.63 180.36 2.28 1.99 16 20 N -0.59 -3.76 11.19 -204.01 -2.28 -6.04 16 21 C 0.18 1.15 13.03 180.77 2.36 3.50 16 22 N -0.35 -2.32 12.57 -61.25 -0.77 -3.08 16 23 C -0.13 0.09 7.44 31.21 0.23 0.33 16 24 C -0.11 -0.79 9.70 22.27 0.22 -0.58 16 25 C -0.15 -1.43 8.67 22.27 0.19 -1.23 16 26 H 0.40 -2.94 8.74 -74.06 -0.65 -3.58 16 27 H 0.10 -0.16 7.96 -2.39 -0.02 -0.18 16 28 H -0.28 -1.54 7.11 99.48 0.71 -0.83 16 29 H -0.31 -3.08 7.11 99.48 0.71 -2.37 16 30 H 0.13 0.76 8.06 -2.91 -0.02 0.74 16 31 H 0.14 0.27 8.06 -2.91 -0.02 0.24 16 32 H 0.13 -1.19 8.09 -2.39 -0.02 -1.21 16 33 H 0.13 -1.22 8.08 -2.38 -0.02 -1.24 16 34 H 0.42 -5.05 8.73 -92.71 -0.81 -5.86 16 35 H 0.12 -1.91 8.08 -2.39 -0.02 -1.93 16 36 H 0.09 -0.86 8.14 -2.39 -0.02 -0.88 16 37 H 0.14 -2.39 8.09 -2.39 -0.02 -2.40 16 38 H 0.10 -1.05 7.84 -2.39 -0.02 -1.07 16 39 H 0.26 -3.05 8.06 -2.91 -0.02 -3.07 16 40 H 0.23 0.23 8.06 -2.91 -0.02 0.21 16 41 H 0.04 0.27 8.14 -2.38 -0.02 0.25 16 42 H 0.10 -0.26 7.89 -2.39 -0.02 -0.28 16 43 H 0.14 0.37 8.06 -2.91 -0.02 0.35 16 44 H 0.11 1.01 4.88 -2.91 -0.01 0.99 16 Total: 0.00 -36.94 374.68 0.51 -36.44 By element: Atomic # 1 Polarization: -21.38 SS G_CDS: -0.38 Total: -21.76 kcal Atomic # 6 Polarization: -2.04 SS G_CDS: 7.50 Total: 5.46 kcal Atomic # 7 Polarization: -3.16 SS G_CDS: -6.71 Total: -9.86 kcal Atomic # 8 Polarization: -11.28 SS G_CDS: -1.95 Total: -13.22 kcal Atomic # 14 Polarization: 0.91 SS G_CDS: 2.04 Total: 2.95 kcal Total: -36.94 0.51 -36.44 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14644236_12335836.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.271 kcal (2) G-P(sol) polarization free energy of solvation -36.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.436 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.835 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds