Wall clock time and date at job start Sun Mar 7 2021 00:06:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42906 * 1 3 3 Si 1.86298 * 109.47129 * 2 1 4 4 C 1.50701 * 109.46611 * 119.99834 * 2 1 3 5 5 C 1.34455 * 126.48202 * 255.02479 * 4 2 1 6 6 N 1.36565 * 109.98446 * 179.97438 * 5 4 2 7 7 C 1.37827 * 109.86253 * 359.97438 * 6 5 4 8 8 C 1.38642 * 133.38147 * 179.97438 * 7 6 5 9 9 C 1.39327 * 119.66345 * 180.02562 * 8 7 6 10 10 C 1.47577 * 119.82771 * 180.02562 * 9 8 7 11 11 O 1.21592 * 120.00149 * 359.97438 * 10 9 8 12 12 N 1.34776 * 119.99555 * 180.02562 * 10 9 8 13 13 C 1.46505 * 119.99857 * 179.97438 * 12 10 9 14 14 H 1.09006 * 112.84485 * 25.33594 * 13 12 10 15 15 C 1.53778 * 113.61435 * 156.52471 * 13 12 10 16 16 C 1.53783 * 87.07840 * 139.98149 * 15 13 12 17 17 H 1.09004 * 113.61125 * 89.11829 * 16 15 13 18 18 C 1.53000 * 113.61772 * 219.93559 * 16 15 13 19 19 N 1.46498 * 109.47339 * 185.00335 * 18 16 15 20 20 C 1.34425 * 126.82082 * 124.70780 * 19 18 16 21 21 N 1.30838 * 108.07787 * 179.89301 * 20 19 18 22 22 C 1.33239 * 109.82587 * 0.38682 * 21 20 19 23 23 N 1.30720 * 108.94924 * 359.75771 * 22 21 20 24 24 C 1.53776 * 113.61730 * 254.13645 * 13 12 10 25 25 C 1.40199 * 120.33860 * 359.96426 * 9 8 7 26 26 C 1.36231 * 120.37763 * 0.05252 * 25 9 8 27 27 C 1.39885 * 119.95749 * 359.96578 * 26 25 9 28 28 H 0.96694 * 113.99956 * 300.00553 * 1 2 3 29 29 H 1.08996 * 109.47192 * 239.99827 * 2 1 3 30 30 H 1.48499 * 109.99994 * 299.99751 * 3 2 1 31 31 H 1.48505 * 110.00357 * 61.31819 * 3 2 1 32 32 H 1.08005 * 125.00775 * 359.95457 * 5 4 2 33 33 H 0.97009 * 125.06764 * 179.97438 * 6 5 4 34 34 H 1.07995 * 120.17007 * 0.04915 * 8 7 6 35 35 H 0.96995 * 120.00176 * 359.97438 * 12 10 9 36 36 H 1.08992 * 113.62095 * 254.53237 * 15 13 12 37 37 H 1.09008 * 113.61490 * 25.35529 * 15 13 12 38 38 H 1.09005 * 109.47155 * 305.00613 * 18 16 15 39 39 H 1.09002 * 109.47131 * 65.00200 * 18 16 15 40 40 H 1.07999 * 125.96839 * 0.04173 * 20 19 18 41 41 H 1.08007 * 125.53168 * 179.72736 * 22 21 20 42 42 H 1.08999 * 113.61527 * 334.57082 * 24 13 12 43 43 H 1.08999 * 113.61365 * 105.47060 * 24 13 12 44 44 H 1.07996 * 119.80978 * 180.02562 * 25 9 8 45 45 H 1.07993 * 120.02235 * 180.24172 * 26 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4291 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 6 1.9313 -0.7104 1.2305 5 6 2.4611 -0.1362 2.3248 6 7 2.8024 -1.0946 3.2359 7 6 2.4933 -2.3430 2.7404 8 6 2.6296 -3.6278 3.2434 9 6 2.2117 -4.7154 2.4794 10 6 2.3546 -6.0844 3.0116 11 8 2.8363 -6.2610 4.1140 12 7 1.9520 -7.1390 2.2752 13 6 2.0943 -8.4982 2.8032 14 1 2.1079 -8.5296 3.8928 15 6 1.1246 -9.5097 2.1698 16 6 2.2904 -10.5127 2.1772 17 1 2.3587 -11.0960 3.0955 18 6 2.3629 -11.3776 0.9172 19 7 3.4249 -12.3750 1.0699 20 6 3.3013 -13.7082 0.9504 21 7 4.4764 -14.2451 1.1568 22 6 5.3694 -13.2913 1.4181 23 7 4.7732 -12.1287 1.3764 24 6 3.2343 -9.2968 2.1496 25 6 1.6552 -4.5157 1.2082 26 6 1.5179 -3.2568 0.7062 27 6 1.9331 -2.1547 1.4611 28 1 -0.3933 0.4417 0.7650 29 1 1.7924 -0.5138 -0.8899 30 1 1.5616 2.4678 -1.2085 31 1 1.5880 2.4586 1.2242 32 1 2.5970 0.9263 2.4628 33 1 3.2028 -0.9224 4.1025 34 1 3.0570 -3.7847 4.2227 35 1 1.5681 -6.9981 1.3957 36 1 0.3005 -9.7934 2.8242 37 1 0.7938 -9.2301 1.1695 38 1 1.4086 -11.8828 0.7679 39 1 2.5785 -10.7463 0.0551 40 1 2.3913 -14.2428 0.7213 41 1 6.4160 -13.4525 1.6306 42 1 3.4826 -8.9595 1.1433 43 1 4.1108 -9.4088 2.7878 44 1 1.3338 -5.3649 0.6235 45 1 1.0849 -3.1094 -0.2720 There are 64 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 64 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_14644236_12335838.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 00:06:01 Heat of formation + Delta-G solvation = 119.392703 kcal Electronic energy + Delta-G solvation = -29415.370536 eV Core-core repulsion = 25209.983396 eV Total energy + Delta-G solvation = -4205.387140 eV No. of doubly occupied orbitals = 64 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 354.148 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -42.95504 -42.50386 -41.21972 -39.66990 -37.96324 -37.48349 -35.48790 -34.01299 -33.28268 -32.09146 -30.76104 -30.69409 -29.01592 -26.86843 -26.57548 -25.43909 -23.82340 -23.63155 -22.85943 -22.31315 -21.46668 -20.94256 -20.71350 -19.41218 -18.49525 -18.30928 -17.74675 -17.29752 -16.99062 -16.82382 -16.30877 -16.16894 -15.98362 -15.82824 -15.65248 -15.59159 -15.19493 -15.03576 -14.81585 -14.74426 -14.58747 -14.48869 -13.91359 -13.79892 -13.59541 -13.23932 -13.12269 -12.91103 -12.63189 -12.51006 -12.30586 -12.19351 -12.01551 -11.82113 -11.50376 -10.91860 -10.87559 -10.77606 -10.69444 -10.59004 -10.51561 -10.05698 -9.37144 -8.83812 -4.99739 -0.27491 0.38059 0.71673 1.26298 1.33542 1.34611 1.51884 1.85872 1.92822 2.00506 2.09335 2.22977 2.91388 3.12600 3.29457 3.42695 3.44391 3.47027 3.56878 3.64902 3.71825 3.74275 3.84251 3.86610 3.98061 4.01746 4.07822 4.12869 4.30269 4.41147 4.41835 4.46834 4.52521 4.54709 4.59455 4.64665 4.74628 4.84601 4.97277 5.04293 5.11661 5.22585 5.33808 5.41863 5.42885 5.52759 5.53812 5.59269 5.84937 5.96944 6.33413 6.46372 6.48478 7.18312 7.23571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.531 6.531 2 C -0.038 4.038 3 Si 0.684 3.316 4 C -0.207 4.207 5 C 0.074 3.926 6 N -0.583 5.583 7 C 0.082 3.918 8 C -0.056 4.056 9 C -0.122 4.122 10 C 0.564 3.436 11 O -0.537 6.537 12 N -0.716 5.716 13 C 0.123 3.877 14 H 0.117 0.883 15 C -0.137 4.137 16 C -0.119 4.119 17 H 0.100 0.900 18 C 0.140 3.860 19 N -0.379 5.379 20 C 0.251 3.749 21 N -0.547 5.547 22 C 0.196 3.804 23 N -0.312 5.312 24 C -0.135 4.135 25 C -0.113 4.113 26 C -0.072 4.072 27 C -0.063 4.063 28 H 0.374 0.626 29 H 0.115 0.885 30 H -0.256 1.256 31 H -0.260 1.260 32 H 0.176 0.824 33 H 0.422 0.578 34 H 0.136 0.864 35 H 0.401 0.599 36 H 0.082 0.918 37 H 0.092 0.908 38 H 0.105 0.895 39 H 0.091 0.909 40 H 0.218 0.782 41 H 0.216 0.784 42 H 0.087 0.913 43 H 0.078 0.922 44 H 0.125 0.875 45 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.143 2.642 -2.107 4.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.337 6.337 2 C -0.148 4.148 3 Si 0.585 3.415 4 C -0.214 4.214 5 C -0.055 4.055 6 N -0.186 5.186 7 C -0.025 4.025 8 C -0.077 4.077 9 C -0.126 4.126 10 C 0.353 3.647 11 O -0.415 6.415 12 N -0.367 5.367 13 C 0.018 3.982 14 H 0.135 0.865 15 C -0.176 4.176 16 C -0.139 4.139 17 H 0.118 0.882 18 C 0.018 3.982 19 N -0.170 5.170 20 C -0.045 4.045 21 N -0.274 5.274 22 C -0.107 4.107 23 N -0.139 5.139 24 C -0.173 4.173 25 C -0.133 4.133 26 C -0.091 4.091 27 C -0.068 4.068 28 H 0.221 0.779 29 H 0.133 0.867 30 H -0.180 1.180 31 H -0.185 1.185 32 H 0.193 0.807 33 H 0.260 0.740 34 H 0.154 0.846 35 H 0.237 0.763 36 H 0.101 0.899 37 H 0.110 0.890 38 H 0.123 0.877 39 H 0.110 0.890 40 H 0.234 0.766 41 H 0.233 0.767 42 H 0.106 0.894 43 H 0.096 0.904 44 H 0.143 0.857 45 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -1.492 3.477 -1.649 4.127 hybrid contribution -1.287 -0.086 0.492 1.380 sum -2.779 3.391 -1.157 4.535 Atomic orbital electron populations 1.86608 1.18068 1.79929 1.49087 1.24290 0.83380 1.09899 0.97236 0.95156 0.91514 0.74298 0.80537 1.20668 1.10609 0.92090 0.98065 1.21827 0.99718 0.94503 0.89403 1.41729 1.54625 1.04034 1.18170 1.18081 1.03215 0.86290 0.94880 1.20083 0.99411 0.88088 1.00157 1.19432 1.04996 0.92338 0.95841 1.18196 0.77331 0.84612 0.84592 1.90797 1.44212 1.86223 1.20263 1.45851 1.64326 1.05738 1.20826 1.22507 0.96246 0.79336 1.00090 0.86543 1.23374 0.96946 0.94983 1.02256 1.22657 0.97950 0.95173 0.98135 0.88157 1.21870 0.87428 0.89889 0.98989 1.50586 1.07719 1.06825 1.51867 1.26128 0.99074 0.82308 0.97032 1.70566 0.99540 1.33945 1.23351 1.26078 1.01064 0.85298 0.98232 1.78101 0.88327 1.23681 1.23815 1.23487 0.97842 0.93878 1.02126 1.20669 1.00650 0.97318 0.94687 1.20203 0.98704 0.90465 0.99680 1.19166 1.01012 0.93031 0.93561 0.77882 0.86710 1.18033 1.18495 0.80690 0.74003 0.84628 0.76261 0.89890 0.88954 0.87685 0.89041 0.76570 0.76733 0.89449 0.90363 0.85696 0.85154 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.53 -0.46 12.88 -35.23 -0.45 -0.91 16 2 C -0.04 0.03 3.06 36.01 0.11 0.14 16 3 Si 0.68 -1.40 30.82 -169.99 -5.24 -6.64 16 4 C -0.21 0.04 5.57 -102.74 -0.57 -0.53 16 5 C 0.07 -0.13 10.43 -16.78 -0.17 -0.31 16 6 N -0.58 0.80 6.07 -10.68 -0.06 0.74 16 7 C 0.08 0.09 7.26 -84.00 -0.61 -0.52 16 8 C -0.06 -0.11 9.61 -39.03 -0.37 -0.48 16 9 C -0.12 -0.21 5.87 -104.95 -0.62 -0.82 16 10 C 0.56 1.52 7.76 -12.45 -0.10 1.43 16 11 O -0.54 -3.46 15.93 5.28 0.08 -3.37 16 12 N -0.72 0.42 5.31 -54.04 -0.29 0.13 16 13 C 0.12 -0.10 4.21 -67.12 -0.28 -0.39 16 14 H 0.12 0.14 7.50 -51.93 -0.39 -0.25 16 15 C -0.14 0.52 7.39 -25.92 -0.19 0.33 16 16 C -0.12 0.31 3.85 -89.72 -0.35 -0.04 16 17 H 0.10 -0.13 8.14 -51.93 -0.42 -0.55 16 18 C 0.14 -0.47 6.39 -4.04 -0.03 -0.49 16 19 N -0.38 -0.03 3.69 -62.63 -0.23 -0.26 16 20 C 0.25 -0.02 12.63 -90.65 -1.14 -1.16 16 21 N -0.55 -1.62 11.19 -15.83 -0.18 -1.80 16 22 C 0.20 0.47 13.03 -91.81 -1.20 -0.72 16 23 N -0.31 -0.86 12.57 29.29 0.37 -0.49 16 24 C -0.13 0.10 7.45 -25.83 -0.19 -0.09 16 25 C -0.11 0.02 9.46 -39.57 -0.37 -0.36 16 26 C -0.07 -0.04 10.03 -39.69 -0.40 -0.44 16 27 C -0.06 -0.09 6.35 -105.04 -0.67 -0.75 16 28 H 0.37 -0.72 8.70 45.56 0.40 -0.32 16 29 H 0.12 -0.13 7.96 -51.93 -0.41 -0.54 16 30 H -0.26 -0.40 7.11 56.52 0.40 0.00 16 31 H -0.26 0.19 7.00 56.52 0.40 0.59 16 32 H 0.18 -0.80 6.27 -52.48 -0.33 -1.13 16 33 H 0.42 -1.69 8.96 -40.82 -0.37 -2.06 16 34 H 0.14 0.25 7.62 -52.49 -0.40 -0.15 16 35 H 0.40 -1.31 6.70 -40.82 -0.27 -1.58 16 36 H 0.08 -0.32 8.14 -51.93 -0.42 -0.75 16 37 H 0.09 -0.50 8.07 -51.92 -0.42 -0.92 16 38 H 0.10 -0.65 8.09 -51.93 -0.42 -1.07 16 39 H 0.09 -0.34 7.86 -51.93 -0.41 -0.75 16 40 H 0.22 -0.98 8.06 -52.49 -0.42 -1.41 16 41 H 0.22 -0.11 8.06 -52.48 -0.42 -0.54 16 42 H 0.09 -0.08 7.91 -51.93 -0.41 -0.49 16 43 H 0.08 0.13 8.14 -51.93 -0.42 -0.29 16 44 H 0.13 -0.39 6.36 -52.49 -0.33 -0.72 16 45 H 0.13 -0.08 8.06 -52.49 -0.42 -0.50 16 LS Contribution 383.51 15.07 5.78 5.78 Total: 0.00 -12.59 383.51 -12.88 -25.47 By element: Atomic # 1 Polarization: -7.91 SS G_CDS: -5.51 Total: -13.42 kcal Atomic # 6 Polarization: 1.93 SS G_CDS: -7.15 Total: -5.22 kcal Atomic # 7 Polarization: -1.29 SS G_CDS: -0.39 Total: -1.69 kcal Atomic # 8 Polarization: -3.92 SS G_CDS: -0.37 Total: -4.29 kcal Atomic # 14 Polarization: -1.40 SS G_CDS: -5.24 Total: -6.64 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -12.59 -12.88 -25.47 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14644236_12335838.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.865 kcal (2) G-P(sol) polarization free energy of solvation -12.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 132.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -25.472 kcal (6) G-S(sol) free energy of system = (1) + (5) 119.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds