Wall clock time and date at job start Sun Mar 7 2021 00:05:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42906 * 1 3 3 Si 1.86298 * 109.47129 * 2 1 4 4 C 1.50701 * 109.46611 * 119.99834 * 2 1 3 5 5 C 1.34455 * 126.48202 * 255.02479 * 4 2 1 6 6 N 1.36565 * 109.98446 * 179.97438 * 5 4 2 7 7 C 1.37827 * 109.86253 * 359.97438 * 6 5 4 8 8 C 1.38642 * 133.38147 * 179.97438 * 7 6 5 9 9 C 1.39327 * 119.66345 * 180.02562 * 8 7 6 10 10 C 1.47577 * 119.82771 * 180.02562 * 9 8 7 11 11 O 1.21592 * 120.00149 * 359.97438 * 10 9 8 12 12 N 1.34776 * 119.99555 * 180.02562 * 10 9 8 13 13 C 1.46505 * 119.99857 * 179.97438 * 12 10 9 14 14 H 1.09006 * 112.84485 * 25.33594 * 13 12 10 15 15 C 1.53778 * 113.61435 * 156.52471 * 13 12 10 16 16 C 1.53783 * 87.07840 * 139.98149 * 15 13 12 17 17 H 1.09004 * 113.61125 * 89.11829 * 16 15 13 18 18 C 1.53000 * 113.61772 * 219.93559 * 16 15 13 19 19 N 1.46498 * 109.47339 * 185.00335 * 18 16 15 20 20 C 1.34425 * 126.82082 * 124.70780 * 19 18 16 21 21 N 1.30838 * 108.07787 * 179.89301 * 20 19 18 22 22 C 1.33239 * 109.82587 * 0.38682 * 21 20 19 23 23 N 1.30720 * 108.94924 * 359.75771 * 22 21 20 24 24 C 1.53776 * 113.61730 * 254.13645 * 13 12 10 25 25 C 1.40199 * 120.33860 * 359.96426 * 9 8 7 26 26 C 1.36231 * 120.37763 * 0.05252 * 25 9 8 27 27 C 1.39885 * 119.95749 * 359.96578 * 26 25 9 28 28 H 0.96694 * 113.99956 * 300.00553 * 1 2 3 29 29 H 1.08996 * 109.47192 * 239.99827 * 2 1 3 30 30 H 1.48499 * 109.99994 * 299.99751 * 3 2 1 31 31 H 1.48505 * 110.00357 * 61.31819 * 3 2 1 32 32 H 1.08005 * 125.00775 * 359.95457 * 5 4 2 33 33 H 0.97009 * 125.06764 * 179.97438 * 6 5 4 34 34 H 1.07995 * 120.17007 * 0.04915 * 8 7 6 35 35 H 0.96995 * 120.00176 * 359.97438 * 12 10 9 36 36 H 1.08992 * 113.62095 * 254.53237 * 15 13 12 37 37 H 1.09008 * 113.61490 * 25.35529 * 15 13 12 38 38 H 1.09005 * 109.47155 * 305.00613 * 18 16 15 39 39 H 1.09002 * 109.47131 * 65.00200 * 18 16 15 40 40 H 1.07999 * 125.96839 * 0.04173 * 20 19 18 41 41 H 1.08007 * 125.53168 * 179.72736 * 22 21 20 42 42 H 1.08999 * 113.61527 * 334.57082 * 24 13 12 43 43 H 1.08999 * 113.61365 * 105.47060 * 24 13 12 44 44 H 1.07996 * 119.80978 * 180.02562 * 25 9 8 45 45 H 1.07993 * 120.02235 * 180.24172 * 26 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4291 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 6 1.9313 -0.7104 1.2305 5 6 2.4611 -0.1362 2.3248 6 7 2.8024 -1.0946 3.2359 7 6 2.4933 -2.3430 2.7404 8 6 2.6296 -3.6278 3.2434 9 6 2.2117 -4.7154 2.4794 10 6 2.3546 -6.0844 3.0116 11 8 2.8363 -6.2610 4.1140 12 7 1.9520 -7.1390 2.2752 13 6 2.0943 -8.4982 2.8032 14 1 2.1079 -8.5296 3.8928 15 6 1.1246 -9.5097 2.1698 16 6 2.2904 -10.5127 2.1772 17 1 2.3587 -11.0960 3.0955 18 6 2.3629 -11.3776 0.9172 19 7 3.4249 -12.3750 1.0699 20 6 3.3013 -13.7082 0.9504 21 7 4.4764 -14.2451 1.1568 22 6 5.3694 -13.2913 1.4181 23 7 4.7732 -12.1287 1.3764 24 6 3.2343 -9.2968 2.1496 25 6 1.6552 -4.5157 1.2082 26 6 1.5179 -3.2568 0.7062 27 6 1.9331 -2.1547 1.4611 28 1 -0.3933 0.4417 0.7650 29 1 1.7924 -0.5138 -0.8899 30 1 1.5616 2.4678 -1.2085 31 1 1.5880 2.4586 1.2242 32 1 2.5970 0.9263 2.4628 33 1 3.2028 -0.9224 4.1025 34 1 3.0570 -3.7847 4.2227 35 1 1.5681 -6.9981 1.3957 36 1 0.3005 -9.7934 2.8242 37 1 0.7938 -9.2301 1.1695 38 1 1.4086 -11.8828 0.7679 39 1 2.5785 -10.7463 0.0551 40 1 2.3913 -14.2428 0.7213 41 1 6.4160 -13.4525 1.6306 42 1 3.4826 -8.9595 1.1433 43 1 4.1108 -9.4088 2.7878 44 1 1.3338 -5.3649 0.6235 45 1 1.0849 -3.1094 -0.2720 There are 64 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 64 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14644236_12335838.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 00:05:59 Heat of formation + Delta-G solvation = 117.867606 kcal Electronic energy + Delta-G solvation = -29415.436669 eV Core-core repulsion = 25209.983396 eV Total energy + Delta-G solvation = -4205.453273 eV No. of doubly occupied orbitals = 64 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 354.148 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -42.95826 -42.47165 -41.26228 -39.68111 -37.96372 -37.50054 -35.49644 -34.04720 -33.26603 -32.13883 -30.75873 -30.68537 -28.92086 -26.73130 -26.51305 -25.42662 -23.81574 -23.64109 -22.84065 -22.28699 -21.54791 -20.89087 -20.61318 -19.39187 -18.45302 -18.28191 -17.69856 -17.31375 -16.98174 -16.75352 -16.32234 -16.17271 -16.03170 -15.83234 -15.61851 -15.55863 -15.14202 -15.02598 -14.84642 -14.77254 -14.49027 -14.44986 -13.89888 -13.68238 -13.45027 -13.19471 -13.07372 -12.85352 -12.64769 -12.49860 -12.24139 -12.19400 -11.91894 -11.77665 -11.41296 -11.09651 -10.95674 -10.79603 -10.77235 -10.55230 -10.45411 -10.12555 -9.37099 -8.80526 -4.83639 -0.33399 0.37350 0.72907 1.37841 1.39703 1.48257 1.63973 1.87582 1.91315 2.03222 2.04631 2.26573 2.85888 3.31590 3.44155 3.55380 3.55804 3.57689 3.65909 3.71884 3.76847 3.86462 3.90704 3.95188 4.11734 4.13925 4.20060 4.29206 4.34728 4.48547 4.53381 4.59141 4.59486 4.71836 4.72868 4.80663 4.81416 4.97011 4.98410 5.04944 5.16316 5.21871 5.35934 5.41162 5.47746 5.47927 5.56302 5.61335 5.97736 5.97952 6.46923 6.50531 6.61954 7.13687 7.15880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.553 6.553 2 C -0.047 4.047 3 Si 0.771 3.229 4 C -0.224 4.224 5 C 0.089 3.911 6 N -0.578 5.578 7 C 0.067 3.933 8 C -0.070 4.070 9 C -0.136 4.136 10 C 0.560 3.440 11 O -0.587 6.587 12 N -0.699 5.699 13 C 0.112 3.888 14 H 0.089 0.911 15 C -0.112 4.112 16 C -0.110 4.110 17 H 0.084 0.916 18 C 0.135 3.865 19 N -0.379 5.379 20 C 0.256 3.744 21 N -0.586 5.586 22 C 0.183 3.817 23 N -0.345 5.345 24 C -0.136 4.136 25 C -0.106 4.106 26 C -0.083 4.083 27 C -0.079 4.079 28 H 0.384 0.616 29 H 0.115 0.885 30 H -0.308 1.308 31 H -0.269 1.269 32 H 0.207 0.793 33 H 0.434 0.566 34 H 0.125 0.875 35 H 0.417 0.583 36 H 0.092 0.908 37 H 0.122 0.878 38 H 0.146 0.854 39 H 0.101 0.899 40 H 0.260 0.740 41 H 0.229 0.771 42 H 0.093 0.907 43 H 0.043 0.957 44 H 0.155 0.845 45 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.724 2.917 -3.518 5.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.361 6.361 2 C -0.156 4.156 3 Si 0.675 3.325 4 C -0.231 4.231 5 C -0.040 4.040 6 N -0.181 5.181 7 C -0.040 4.040 8 C -0.091 4.091 9 C -0.141 4.141 10 C 0.349 3.651 11 O -0.468 6.468 12 N -0.350 5.350 13 C 0.008 3.992 14 H 0.107 0.893 15 C -0.151 4.151 16 C -0.130 4.130 17 H 0.102 0.898 18 C 0.014 3.986 19 N -0.169 5.169 20 C -0.040 4.040 21 N -0.314 5.314 22 C -0.120 4.120 23 N -0.173 5.173 24 C -0.175 4.175 25 C -0.125 4.125 26 C -0.101 4.101 27 C -0.084 4.084 28 H 0.232 0.768 29 H 0.132 0.868 30 H -0.236 1.236 31 H -0.195 1.195 32 H 0.223 0.777 33 H 0.274 0.726 34 H 0.143 0.857 35 H 0.256 0.744 36 H 0.110 0.890 37 H 0.140 0.860 38 H 0.163 0.837 39 H 0.119 0.881 40 H 0.276 0.724 41 H 0.245 0.755 42 H 0.111 0.889 43 H 0.062 0.938 44 H 0.173 0.827 45 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -3.093 3.731 -3.065 5.734 hybrid contribution -0.825 -0.123 0.908 1.233 sum -3.918 3.608 -2.158 5.746 Atomic orbital electron populations 1.86571 1.19123 1.80452 1.49930 1.24544 0.82723 1.11227 0.97113 0.94155 0.90051 0.71255 0.77002 1.20759 1.11902 0.91501 0.98969 1.22295 0.97741 0.95573 0.88406 1.41814 1.54155 1.03341 1.18790 1.18123 1.03873 0.86734 0.95279 1.20133 0.99986 0.88957 1.00041 1.19480 1.06127 0.91652 0.96820 1.18469 0.76808 0.85647 0.84175 1.90766 1.46732 1.86911 1.22437 1.45750 1.63021 1.05187 1.21046 1.22546 0.98019 0.79724 0.98959 0.89324 1.23300 0.95922 0.92260 1.03571 1.22518 0.97674 0.94656 0.98177 0.89780 1.22224 0.88127 0.89824 0.98391 1.50776 1.07257 1.07671 1.51235 1.26921 0.99533 0.82322 0.95207 1.70542 1.00870 1.35000 1.24987 1.26432 1.01933 0.85338 0.98304 1.78023 0.90101 1.24321 1.24863 1.23462 0.96926 0.95520 1.01555 1.20911 0.99509 0.98230 0.93892 1.20431 0.98900 0.90587 1.00190 1.19553 1.00939 0.94206 0.93744 0.76751 0.86758 1.23606 1.19521 0.77682 0.72636 0.85693 0.74411 0.88983 0.86010 0.83663 0.88127 0.72436 0.75526 0.88876 0.93790 0.82728 0.84066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 -0.91 12.88 -148.98 -1.92 -2.83 16 2 C -0.05 0.09 3.06 71.24 0.22 0.31 16 3 Si 0.77 -3.77 30.82 68.60 2.11 -1.65 16 4 C -0.22 0.20 5.57 -18.64 -0.10 0.09 16 5 C 0.09 -0.42 10.43 83.09 0.87 0.44 16 6 N -0.58 1.68 6.07 -187.72 -1.14 0.54 16 7 C 0.07 0.21 7.26 38.95 0.28 0.49 16 8 C -0.07 -0.40 9.61 22.63 0.22 -0.19 16 9 C -0.14 -0.64 5.87 -20.07 -0.12 -0.76 16 10 C 0.56 4.05 7.76 86.71 0.67 4.72 16 11 O -0.59 -9.48 15.93 -4.01 -0.06 -9.55 16 12 N -0.70 0.52 5.31 -443.15 -2.35 -1.83 16 13 C 0.11 -0.09 4.21 45.51 0.19 0.10 16 14 H 0.09 0.46 7.50 -2.38 -0.02 0.44 16 15 C -0.11 1.03 7.39 31.12 0.23 1.26 16 16 C -0.11 0.62 3.85 -10.21 -0.04 0.58 16 17 H 0.08 -0.15 8.14 -2.38 -0.02 -0.17 16 18 C 0.13 -1.16 6.39 86.38 0.55 -0.61 16 19 N -0.38 0.17 3.69 -352.06 -1.30 -1.13 16 20 C 0.26 -0.30 12.63 180.36 2.28 1.98 16 21 N -0.59 -3.69 11.19 -203.99 -2.28 -5.98 16 22 C 0.18 1.12 13.03 180.76 2.36 3.48 16 23 N -0.34 -2.28 12.57 -61.24 -0.77 -3.05 16 24 C -0.14 0.03 7.45 31.18 0.23 0.26 16 25 C -0.11 0.04 9.46 22.28 0.21 0.25 16 26 C -0.08 -0.09 10.03 22.20 0.22 0.13 16 27 C -0.08 -0.24 6.35 -20.14 -0.13 -0.37 16 28 H 0.38 -1.55 8.70 -74.06 -0.64 -2.19 16 29 H 0.11 -0.27 7.96 -2.39 -0.02 -0.29 16 30 H -0.31 -1.22 7.11 99.48 0.71 -0.51 16 31 H -0.27 0.90 7.00 99.48 0.70 1.59 16 32 H 0.21 -2.36 6.27 -2.91 -0.02 -2.38 16 33 H 0.43 -3.53 8.96 -92.70 -0.83 -4.36 16 34 H 0.13 0.86 7.62 -2.91 -0.02 0.84 16 35 H 0.42 -3.20 6.70 -92.71 -0.62 -3.82 16 36 H 0.09 -0.91 8.14 -2.39 -0.02 -0.93 16 37 H 0.12 -1.77 8.07 -2.38 -0.02 -1.79 16 38 H 0.15 -2.38 8.09 -2.38 -0.02 -2.40 16 39 H 0.10 -0.99 7.86 -2.39 -0.02 -1.01 16 40 H 0.26 -3.05 8.06 -2.91 -0.02 -3.08 16 41 H 0.23 0.19 8.06 -2.91 -0.02 0.17 16 42 H 0.09 -0.14 7.91 -2.39 -0.02 -0.16 16 43 H 0.04 0.29 8.14 -2.39 -0.02 0.28 16 44 H 0.16 -1.20 6.36 -2.91 -0.02 -1.21 16 45 H 0.14 -0.23 8.06 -2.91 -0.02 -0.26 16 Total: 0.00 -33.97 383.51 -0.57 -34.54 By element: Atomic # 1 Polarization: -20.25 SS G_CDS: -0.99 Total: -21.25 kcal Atomic # 6 Polarization: 4.04 SS G_CDS: 8.14 Total: 12.18 kcal Atomic # 7 Polarization: -3.60 SS G_CDS: -7.84 Total: -11.45 kcal Atomic # 8 Polarization: -10.39 SS G_CDS: -1.98 Total: -12.37 kcal Atomic # 14 Polarization: -3.77 SS G_CDS: 2.11 Total: -1.65 kcal Total: -33.97 -0.57 -34.54 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14644236_12335838.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.408 kcal (2) G-P(sol) polarization free energy of solvation -33.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 118.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.540 kcal (6) G-S(sol) free energy of system = (1) + (5) 117.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds