Wall clock time and date at job start Sun Mar 7 2021 00:06:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42903 * 1 3 3 Si 1.86293 * 109.47041 * 2 1 4 4 C 1.50699 * 109.47152 * 239.99653 * 2 1 3 5 5 C 1.38316 * 119.92327 * 120.00402 * 4 2 1 6 6 C 1.38466 * 120.28605 * 180.02562 * 5 4 2 7 7 Br 1.89098 * 119.93776 * 179.97438 * 6 5 4 8 8 C 1.38025 * 120.12023 * 359.95297 * 6 5 4 9 9 C 1.39579 * 119.84622 * 0.02562 * 8 6 5 10 10 C 1.47856 * 120.14219 * 179.97438 * 9 8 6 11 11 O 1.21551 * 119.99854 * 179.97438 * 10 9 8 12 12 N 1.34773 * 119.99536 * 359.97438 * 10 9 8 13 13 C 1.46507 * 119.99816 * 179.97438 * 12 10 9 14 14 H 1.09001 * 112.84367 * 25.33928 * 13 12 10 15 15 C 1.53775 * 113.61313 * 156.52947 * 13 12 10 16 16 C 1.53777 * 87.08123 * 139.98585 * 15 13 12 17 17 H 1.08996 * 113.61788 * 89.19801 * 16 15 13 18 18 C 1.53005 * 113.61703 * 220.01942 * 16 15 13 19 19 N 1.46493 * 109.47359 * 184.99829 * 18 16 15 20 20 C 1.34426 * 126.82588 * 125.00065 * 19 18 16 21 21 N 1.30829 * 108.08133 * 179.97438 * 20 19 18 22 22 C 1.33242 * 109.82943 * 359.97438 * 21 20 19 23 23 N 1.30720 * 108.94406 * 359.75291 * 22 21 20 24 24 C 1.53774 * 113.61905 * 254.13955 * 13 12 10 25 25 C 1.37986 * 119.92005 * 299.72705 * 4 2 1 26 26 H 0.96700 * 114.00311 * 300.00531 * 1 2 3 27 27 H 1.09008 * 109.46477 * 119.99697 * 2 1 3 28 28 H 1.48506 * 109.99973 * 299.99283 * 3 2 1 29 29 H 1.48493 * 110.00375 * 61.31384 * 3 2 1 30 30 H 1.08004 * 119.85804 * 359.97438 * 5 4 2 31 31 H 1.08009 * 120.07644 * 180.02562 * 8 6 5 32 32 H 0.97002 * 120.00495 * 0.02562 * 12 10 9 33 33 H 1.09005 * 113.61842 * 254.53458 * 15 13 12 34 34 H 1.08998 * 113.61907 * 25.43711 * 15 13 12 35 35 H 1.09000 * 109.46886 * 305.00098 * 18 16 15 36 36 H 1.09004 * 109.46753 * 64.99437 * 18 16 15 37 37 H 1.08007 * 125.95933 * 359.92811 * 20 19 18 38 38 H 1.07998 * 125.53094 * 180.02562 * 22 21 20 39 39 H 1.09001 * 113.61260 * 334.57137 * 24 13 12 40 40 H 1.09000 * 113.61380 * 105.46346 * 24 13 12 41 41 H 1.07997 * 120.06668 * 359.97438 * 25 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9314 -0.7105 -1.2304 5 6 2.7265 -0.0368 -2.1398 6 6 3.1918 -0.6822 -3.2731 7 35 4.2777 0.2485 -4.5103 8 6 2.8648 -2.0036 -3.5012 9 6 2.0630 -2.6886 -2.5867 10 6 1.7082 -4.1040 -2.8248 11 8 1.0103 -4.6982 -2.0265 12 7 2.1587 -4.7354 -3.9270 13 6 1.8077 -6.1381 -4.1627 14 1 0.8790 -6.4300 -3.6724 15 6 1.8792 -6.5507 -5.6423 16 6 2.4903 -7.8773 -5.1615 17 1 1.7491 -8.6466 -4.9452 18 6 3.6307 -8.3835 -6.0471 19 7 4.0640 -9.7024 -5.5792 20 6 4.1397 -10.8305 -6.3063 21 7 4.5701 -11.7883 -5.5260 22 6 4.7798 -11.3123 -4.2994 23 7 4.4893 -10.0379 -4.2834 24 6 2.9694 -7.1142 -3.9132 25 6 1.6017 -2.0332 -1.4442 26 1 -0.3934 0.4418 0.7650 27 1 1.7923 -0.5138 0.8901 28 1 1.5616 2.4678 -1.2086 29 1 1.5878 2.4586 1.2241 30 1 2.9850 0.9973 -1.9656 31 1 3.2284 -2.5064 -4.3852 32 1 2.7161 -4.2613 -4.5639 33 1 0.9020 -6.6648 -6.1116 34 1 2.5648 -5.9427 -6.2326 35 1 3.2841 -8.4594 -7.0777 36 1 4.4674 -7.6867 -5.9956 37 1 3.8882 -10.9290 -7.3521 38 1 5.1364 -11.8852 -3.4562 39 1 3.9536 -6.6605 -4.0296 40 1 2.8710 -7.6826 -2.9883 41 1 0.9848 -2.5592 -0.7307 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_14644236_12335870.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 00:06:26 Heat of formation + Delta-G solvation = 91.234173 kcal Electronic energy + Delta-G solvation = -26767.069448 eV Core-core repulsion = 22698.059071 eV Total energy + Delta-G solvation = -4069.010377 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 393.047 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.97960 -41.68871 -40.61254 -39.30776 -37.83794 -35.59484 -34.32530 -33.69061 -32.89401 -32.11351 -30.50918 -29.20629 -27.10092 -26.92552 -25.91638 -23.99183 -22.88362 -22.72153 -22.36991 -21.53797 -20.81486 -18.92951 -18.68326 -18.41437 -17.76518 -17.50300 -16.86619 -16.80718 -16.22768 -16.13735 -16.09020 -15.73576 -15.47218 -15.20989 -14.98585 -14.85357 -14.71143 -14.27639 -14.02672 -13.86786 -13.71766 -13.65140 -13.23205 -12.97458 -12.82395 -12.45542 -12.37616 -12.09978 -12.00600 -11.87882 -11.56431 -11.51333 -11.04967 -10.91489 -10.72252 -10.70012 -10.61623 -10.32452 -10.11232 -9.92099 -5.10380 -0.51332 -0.18180 0.37707 0.69237 1.09451 1.31064 1.46534 1.56427 1.82339 1.95878 2.07265 2.45988 3.03394 3.07859 3.22284 3.32184 3.40636 3.45061 3.47399 3.58815 3.72324 3.81664 3.84490 3.93671 3.96064 3.98887 4.05593 4.10432 4.24804 4.38922 4.40485 4.46300 4.53878 4.58447 4.71847 4.78245 4.91589 4.98951 5.02242 5.09072 5.30831 5.33821 5.42099 5.50432 5.82454 6.29185 6.31678 7.06008 7.16056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.533 6.533 2 C -0.076 4.076 3 Si 0.676 3.324 4 C -0.072 4.072 5 C -0.061 4.061 6 C -0.094 4.094 7 Br -0.032 7.032 8 C -0.054 4.054 9 C -0.129 4.129 10 C 0.564 3.436 11 O -0.526 6.526 12 N -0.716 5.716 13 C 0.123 3.877 14 H 0.118 0.882 15 C -0.137 4.137 16 C -0.119 4.119 17 H 0.101 0.899 18 C 0.140 3.860 19 N -0.379 5.379 20 C 0.252 3.748 21 N -0.547 5.547 22 C 0.197 3.803 23 N -0.312 5.312 24 C -0.135 4.135 25 C -0.016 4.016 26 H 0.384 0.616 27 H 0.085 0.915 28 H -0.250 1.250 29 H -0.254 1.254 30 H 0.143 0.857 31 H 0.138 0.862 32 H 0.401 0.599 33 H 0.083 0.917 34 H 0.092 0.908 35 H 0.105 0.895 36 H 0.091 0.909 37 H 0.218 0.782 38 H 0.216 0.784 39 H 0.087 0.913 40 H 0.079 0.921 41 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.325 2.990 -2.958 4.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.341 6.341 2 C -0.185 4.185 3 Si 0.577 3.423 4 C -0.073 4.073 5 C -0.081 4.081 6 C -0.173 4.173 7 Br 0.054 6.946 8 C -0.075 4.075 9 C -0.133 4.133 10 C 0.351 3.649 11 O -0.402 6.402 12 N -0.367 5.367 13 C 0.018 3.982 14 H 0.136 0.864 15 C -0.176 4.176 16 C -0.139 4.139 17 H 0.119 0.881 18 C 0.018 3.982 19 N -0.171 5.171 20 C -0.045 4.045 21 N -0.274 5.274 22 C -0.106 4.106 23 N -0.139 5.139 24 C -0.173 4.173 25 C -0.035 4.035 26 H 0.233 0.767 27 H 0.103 0.897 28 H -0.174 1.174 29 H -0.179 1.179 30 H 0.160 0.840 31 H 0.156 0.844 32 H 0.236 0.764 33 H 0.102 0.898 34 H 0.111 0.889 35 H 0.123 0.877 36 H 0.109 0.891 37 H 0.234 0.766 38 H 0.233 0.767 39 H 0.106 0.894 40 H 0.097 0.903 41 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 2.199 3.632 -2.901 5.142 hybrid contribution -1.102 -0.071 0.189 1.120 sum 1.097 3.561 -2.712 4.608 Atomic orbital electron populations 1.86583 1.17233 1.80263 1.50032 1.24772 0.84986 1.11074 0.97715 0.95164 0.91618 0.74435 0.81127 1.19217 0.98258 0.93934 0.95873 1.21138 0.95463 0.99766 0.91706 1.21583 1.03108 0.95603 0.97044 1.96837 1.65663 1.75490 1.56659 1.21250 0.95268 0.92537 0.98412 1.19939 1.01928 0.94306 0.97108 1.18127 0.79570 0.85790 0.81459 1.90822 1.37229 1.67144 1.45031 1.45873 1.53511 1.12882 1.24419 1.22554 0.99795 0.79635 0.96229 0.86380 1.23379 1.02338 0.95653 0.96191 1.22654 0.97396 0.96849 0.96977 0.88082 1.21863 0.97612 0.80383 0.98316 1.50582 1.48774 1.10083 1.07615 1.26130 0.96627 0.81895 0.99848 1.70565 1.22325 1.31720 1.02759 1.26080 0.98552 0.89982 0.96012 1.78097 1.21300 1.16366 0.98184 1.23491 0.98599 0.96675 0.98563 1.21275 0.94016 0.93004 0.95193 0.76733 0.89729 1.17418 1.17900 0.84024 0.84394 0.76357 0.89785 0.88928 0.87665 0.89056 0.76564 0.76722 0.89408 0.90261 0.83510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.53 -0.29 12.74 -35.23 -0.45 -0.74 16 2 C -0.08 0.06 2.81 36.01 0.10 0.17 16 3 Si 0.68 -1.12 29.78 -169.99 -5.06 -6.18 16 4 C -0.07 -0.03 5.42 -104.69 -0.57 -0.60 16 5 C -0.06 0.02 8.41 -39.47 -0.33 -0.31 16 6 C -0.09 0.04 6.22 -39.58 -0.25 -0.21 16 7 Br -0.03 0.02 33.69 -68.01 -2.29 -2.27 16 8 C -0.05 0.06 9.28 -39.16 -0.36 -0.31 16 9 C -0.13 -0.10 5.87 -104.97 -0.62 -0.72 16 10 C 0.56 1.08 7.77 -12.33 -0.10 0.98 16 11 O -0.53 -3.04 15.97 5.32 0.08 -2.96 16 12 N -0.72 0.96 5.31 -53.96 -0.29 0.67 16 13 C 0.12 -0.18 4.21 -67.12 -0.28 -0.46 16 14 H 0.12 0.07 7.50 -51.93 -0.39 -0.32 16 15 C -0.14 0.59 7.39 -25.92 -0.19 0.39 16 16 C -0.12 0.36 3.86 -89.72 -0.35 0.01 16 17 H 0.10 -0.17 8.14 -51.93 -0.42 -0.59 16 18 C 0.14 -0.52 6.39 -4.04 -0.03 -0.54 16 19 N -0.38 0.08 3.69 -62.63 -0.23 -0.15 16 20 C 0.25 -0.08 12.63 -90.66 -1.14 -1.22 16 21 N -0.55 -1.50 11.19 -15.83 -0.18 -1.68 16 22 C 0.20 0.43 13.03 -91.81 -1.20 -0.77 16 23 N -0.31 -0.77 12.58 29.29 0.37 -0.40 16 24 C -0.13 0.18 7.45 -25.83 -0.19 -0.02 16 25 C -0.02 -0.02 9.16 -39.18 -0.36 -0.38 16 26 H 0.38 -1.32 8.74 45.56 0.40 -0.92 16 27 H 0.08 -0.22 7.96 -51.92 -0.41 -0.63 16 28 H -0.25 -0.34 7.11 56.52 0.40 0.06 16 29 H -0.25 -0.08 7.11 56.52 0.40 0.32 16 30 H 0.14 -0.25 4.86 -52.48 -0.26 -0.50 16 31 H 0.14 -0.51 6.41 -52.48 -0.34 -0.85 16 32 H 0.40 -1.63 6.75 -40.82 -0.28 -1.91 16 33 H 0.08 -0.36 8.14 -51.93 -0.42 -0.79 16 34 H 0.09 -0.55 8.07 -51.93 -0.42 -0.97 16 35 H 0.11 -0.68 8.09 -51.93 -0.42 -1.10 16 36 H 0.09 -0.37 7.85 -51.93 -0.41 -0.78 16 37 H 0.22 -1.03 8.06 -52.48 -0.42 -1.45 16 38 H 0.22 -0.16 8.06 -52.49 -0.42 -0.58 16 39 H 0.09 -0.14 7.90 -51.93 -0.41 -0.55 16 40 H 0.08 0.09 8.14 -51.93 -0.42 -0.34 16 41 H 0.15 0.34 7.65 -52.49 -0.40 -0.06 16 LS Contribution 371.36 15.07 5.60 5.60 Total: 0.00 -11.11 371.36 -12.95 -24.05 By element: Atomic # 1 Polarization: -7.32 SS G_CDS: -4.64 Total: -11.96 kcal Atomic # 6 Polarization: 1.87 SS G_CDS: -5.86 Total: -3.99 kcal Atomic # 7 Polarization: -1.22 SS G_CDS: -0.33 Total: -1.55 kcal Atomic # 8 Polarization: -3.33 SS G_CDS: -0.36 Total: -3.70 kcal Atomic # 14 Polarization: -1.12 SS G_CDS: -5.06 Total: -6.18 kcal Atomic # 35 Polarization: 0.02 SS G_CDS: -2.29 Total: -2.27 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -11.11 -12.95 -24.05 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14644236_12335870.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.289 kcal (2) G-P(sol) polarization free energy of solvation -11.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.947 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.055 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds