Wall clock time and date at job start Sun Mar 7 2021 00:06:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53005 * 109.46903 * 2 1 4 4 C 1.52999 * 109.46883 * 188.54768 * 3 2 1 5 5 C 1.53005 * 109.47054 * 68.54440 * 3 2 1 6 6 C 1.50692 * 109.46868 * 185.62026 * 5 3 2 7 7 O 1.21278 * 120.00246 * 246.97071 * 6 5 3 8 8 N 1.34778 * 119.99883 * 66.97326 * 6 5 3 9 9 C 1.46506 * 119.99867 * 174.93118 * 8 6 5 10 10 H 1.09001 * 112.84586 * 336.19465 * 9 8 6 11 11 C 1.53785 * 113.69212 * 107.46180 * 9 8 6 12 12 C 1.54048 * 87.07362 * 139.98613 * 11 9 8 13 13 H 1.09004 * 113.60822 * 89.07696 * 12 11 9 14 14 C 1.53005 * 113.69452 * 220.04858 * 12 11 9 15 15 N 1.46499 * 109.47084 * 272.42903 * 14 12 11 16 16 C 1.34429 * 126.81959 * 125.00365 * 15 14 12 17 17 N 1.30830 * 108.07568 * 179.97438 * 16 15 14 18 18 C 1.33246 * 109.82951 * 0.02562 * 17 16 15 19 19 N 1.30713 * 108.94689 * 359.74628 * 18 17 16 20 20 C 1.53779 * 86.99117 * 334.57172 * 12 11 9 21 21 N 1.46498 * 109.46890 * 65.62350 * 5 3 2 22 22 C 1.36345 * 125.63808 * 57.02568 * 21 5 3 23 23 C 1.34855 * 108.21763 * 180.02562 * 22 21 5 24 24 C 1.40889 * 107.41750 * 359.97438 * 23 22 21 25 25 C 1.34852 * 107.41992 * 359.73876 * 24 23 22 26 26 C 1.50697 * 125.89507 * 180.25547 * 25 24 23 27 27 O 1.42901 * 109.47022 * 227.73558 * 26 25 24 28 28 Si 1.86306 * 109.46946 * 347.73483 * 26 25 24 29 29 H 1.08999 * 109.46892 * 190.68396 * 1 2 3 30 30 H 1.09003 * 109.47236 * 310.68231 * 1 2 3 31 31 H 1.08998 * 109.47662 * 70.68308 * 1 2 3 32 32 H 1.08994 * 109.46759 * 240.00228 * 2 1 3 33 33 H 1.08996 * 109.46988 * 119.99647 * 2 1 3 34 34 H 1.08999 * 109.46846 * 308.54469 * 3 2 1 35 35 H 1.09008 * 109.47000 * 313.77224 * 4 3 2 36 36 H 1.08997 * 109.47195 * 73.77305 * 4 3 2 37 37 H 1.08999 * 109.46883 * 193.77718 * 4 3 2 38 38 H 1.08994 * 109.47105 * 305.62116 * 5 3 2 39 39 H 0.97000 * 120.00108 * 354.92855 * 8 6 5 40 40 H 1.08996 * 113.61162 * 254.54437 * 11 9 8 41 41 H 1.08995 * 113.61079 * 25.44371 * 11 9 8 42 42 H 1.08998 * 109.46888 * 32.42786 * 14 12 11 43 43 H 1.09004 * 109.46502 * 152.42621 * 14 12 11 44 44 H 1.07993 * 125.96151 * 359.92407 * 16 15 14 45 45 H 1.07999 * 125.52886 * 179.97438 * 18 17 16 46 46 H 1.08998 * 113.61247 * 270.83931 * 20 12 11 47 47 H 1.08995 * 113.61475 * 140.01935 * 20 12 11 48 48 H 1.08000 * 125.89009 * 359.97438 * 22 21 5 49 49 H 1.07996 * 126.28696 * 180.02562 * 23 22 21 50 50 H 1.07999 * 126.29352 * 180.02562 * 24 23 22 51 51 H 1.08997 * 109.47566 * 107.73549 * 26 25 24 52 52 H 0.96696 * 114.00151 * 67.39717 * 27 26 25 53 53 H 1.48493 * 109.99801 * 58.68062 * 28 26 25 54 54 H 1.48500 * 109.99969 * 180.02562 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5549 1.4479 -0.2144 5 6 1.7125 2.0993 1.3426 6 6 2.0897 3.5574 1.2938 7 8 2.9966 3.9726 1.9837 8 7 1.4193 4.4001 0.4834 9 6 1.7105 5.8356 0.5169 10 1 2.1455 6.1571 1.4632 11 6 2.4781 6.3394 -0.7167 12 6 1.5794 7.5896 -0.6673 13 1 1.9787 8.3899 -0.0442 14 6 1.1276 8.0769 -2.0456 15 7 2.1302 8.9949 -2.5917 16 6 2.7556 8.8923 -3.7772 17 7 3.5741 9.9062 -3.8936 18 6 3.4998 10.6740 -2.8071 19 7 2.6251 10.1598 -1.9830 20 6 0.5379 6.7131 0.0482 21 7 2.4673 1.4350 2.4081 22 6 3.8234 1.3028 2.4573 23 6 4.1413 0.6358 3.5854 24 6 2.9374 0.3461 4.2575 25 6 1.9300 0.8522 3.5175 26 6 0.4633 0.7817 3.8559 27 8 -0.2697 0.3459 2.7092 28 14 0.2055 -0.4240 5.2527 29 1 -0.3633 -1.0099 0.1905 30 1 -0.3634 0.6699 0.7793 31 1 -0.3634 0.3399 -0.9698 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 1.5573 1.9985 -0.8038 35 1 4.0161 0.7023 0.4333 36 1 3.7754 1.2112 -1.2553 37 1 3.9524 2.4339 0.0261 38 1 0.6449 2.0066 1.5415 39 1 0.7439 4.0563 -0.1221 40 1 3.5296 6.5493 -0.5209 41 1 2.3260 5.7272 -1.6056 42 1 1.0145 7.2231 -2.7137 43 1 0.1729 8.5947 -1.9528 44 1 2.6086 8.1090 -4.5061 45 1 4.0673 11.5769 -2.6366 46 1 -0.1446 6.2031 -0.6317 47 1 0.0222 7.2237 0.8614 48 1 4.5223 1.6684 1.7196 49 1 5.1360 0.3729 3.9137 50 1 2.8396 -0.1800 5.1956 51 1 0.1122 1.7683 4.1581 52 1 -0.0908 -0.5690 2.4523 53 1 0.9880 0.0008 6.4411 54 1 -1.2372 -0.5031 5.5956 There are 70 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 70 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14644236_12360566.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 00:06:28 Heat of formation + Delta-G solvation = 115.859513 kcal Electronic energy + Delta-G solvation = -35838.253747 eV Core-core repulsion = 31395.241342 eV Total energy + Delta-G solvation = -4443.012405 eV No. of doubly occupied orbitals = 70 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 374.211 amu Computer time = 1.68 seconds Orbital eigenvalues (eV) -43.01224 -42.88193 -41.16131 -39.66179 -37.82566 -37.54508 -35.53328 -34.05900 -32.96418 -32.18791 -31.43723 -30.70700 -29.38110 -28.02455 -26.80661 -25.91685 -24.91120 -24.27525 -22.96241 -22.65898 -22.01573 -21.65340 -21.47631 -20.73822 -20.11316 -18.88367 -18.36831 -18.16957 -17.46769 -16.95942 -16.90159 -16.56217 -16.34145 -16.18103 -16.03227 -15.62821 -15.39324 -15.21459 -15.06748 -14.83189 -14.51025 -14.44724 -14.33562 -14.22191 -14.06909 -13.76748 -13.68249 -13.53062 -13.44779 -13.28716 -13.15046 -12.80787 -12.75341 -12.45095 -12.18569 -12.01439 -11.94926 -11.91604 -11.76366 -11.71040 -11.58880 -11.44537 -11.06701 -10.98867 -10.81744 -10.59361 -10.54923 -10.18879 -9.53347 -8.93799 -4.94974 0.68264 1.10287 1.23403 1.33799 1.43747 1.68467 1.81036 1.99108 2.01570 2.08360 2.24634 3.28528 3.33973 3.37945 3.41973 3.47159 3.51932 3.56438 3.64477 3.70598 3.80936 3.84321 3.97139 4.10816 4.14277 4.19215 4.28146 4.34190 4.40370 4.45305 4.48060 4.55534 4.62708 4.63517 4.66856 4.68811 4.71227 4.72661 4.79830 4.86950 4.92346 4.95960 5.10101 5.12943 5.20530 5.28934 5.30389 5.32200 5.38043 5.41364 5.43010 5.45546 5.69390 5.93946 6.03444 6.25794 6.27561 6.48106 6.64340 7.03666 7.11251 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.112 4.112 3 C -0.084 4.084 4 C -0.166 4.166 5 C 0.118 3.882 6 C 0.500 3.500 7 O -0.568 6.568 8 N -0.698 5.698 9 C 0.118 3.882 10 H 0.079 0.921 11 C -0.138 4.138 12 C -0.116 4.116 13 H 0.077 0.923 14 C 0.137 3.863 15 N -0.378 5.378 16 C 0.258 3.742 17 N -0.586 5.586 18 C 0.186 3.814 19 N -0.352 5.352 20 C -0.115 4.115 21 N -0.408 5.408 22 C 0.007 3.993 23 C -0.225 4.225 24 C -0.206 4.206 25 C -0.019 4.019 26 C -0.049 4.049 27 O -0.539 6.539 28 Si 0.801 3.199 29 H 0.062 0.938 30 H 0.079 0.921 31 H 0.058 0.942 32 H 0.071 0.929 33 H 0.057 0.943 34 H 0.112 0.888 35 H 0.067 0.933 36 H 0.075 0.925 37 H 0.038 0.962 38 H 0.151 0.849 39 H 0.420 0.580 40 H 0.041 0.959 41 H 0.114 0.886 42 H 0.145 0.855 43 H 0.101 0.899 44 H 0.260 0.740 45 H 0.230 0.770 46 H 0.128 0.872 47 H 0.079 0.921 48 H 0.164 0.836 49 H 0.138 0.862 50 H 0.144 0.856 51 H 0.101 0.899 52 H 0.393 0.607 53 H -0.299 1.299 54 H -0.285 1.285 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.171 -6.530 -6.605 11.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.149 4.149 3 C -0.103 4.103 4 C -0.223 4.223 5 C 0.012 3.988 6 C 0.286 3.714 7 O -0.446 6.446 8 N -0.350 5.350 9 C 0.013 3.987 10 H 0.097 0.903 11 C -0.177 4.177 12 C -0.136 4.136 13 H 0.096 0.904 14 C 0.016 3.984 15 N -0.168 5.168 16 C -0.038 4.038 17 N -0.314 5.314 18 C -0.117 4.117 19 N -0.181 5.181 20 C -0.154 4.154 21 N -0.084 5.084 22 C -0.124 4.124 23 C -0.249 4.249 24 C -0.230 4.230 25 C -0.130 4.130 26 C -0.159 4.159 27 O -0.348 6.348 28 Si 0.706 3.294 29 H 0.082 0.918 30 H 0.098 0.902 31 H 0.078 0.922 32 H 0.090 0.910 33 H 0.076 0.924 34 H 0.130 0.870 35 H 0.086 0.914 36 H 0.093 0.907 37 H 0.058 0.942 38 H 0.168 0.832 39 H 0.259 0.741 40 H 0.060 0.940 41 H 0.133 0.867 42 H 0.163 0.837 43 H 0.119 0.881 44 H 0.276 0.724 45 H 0.246 0.754 46 H 0.146 0.854 47 H 0.097 0.903 48 H 0.181 0.819 49 H 0.156 0.844 50 H 0.162 0.838 51 H 0.118 0.882 52 H 0.244 0.756 53 H -0.226 1.226 54 H -0.212 1.212 Dipole moment (debyes) X Y Z Total from point charges -7.309 -5.269 -5.085 10.346 hybrid contribution 0.610 0.899 0.096 1.090 sum -6.699 -4.370 -4.989 9.427 Atomic orbital electron populations 1.22087 0.94124 1.03381 1.02829 1.21512 0.97206 0.93750 1.02482 1.21501 0.97115 0.98637 0.93093 1.22328 0.95467 1.01243 1.03247 1.21750 0.99531 0.87945 0.89577 1.21190 0.81805 0.89150 0.79289 1.90781 1.30906 1.78703 1.44250 1.45757 1.41344 1.06732 1.41176 1.22375 0.98410 0.79327 0.98593 0.90262 1.23592 0.98192 0.96562 0.99311 1.22562 0.98375 0.96405 0.96252 0.90447 1.22215 0.88951 0.91931 0.95280 1.50744 1.32754 1.18798 1.14551 1.26896 0.89396 0.98301 0.89254 1.70542 1.26054 1.07504 1.27257 1.26432 0.96424 1.00991 0.87847 1.77959 1.17279 0.99440 1.23399 1.23318 0.95706 0.95567 1.00765 1.43531 1.05493 1.42240 1.17093 1.22124 0.84373 1.04713 1.01158 1.21046 0.98880 1.07834 0.97180 1.20826 0.92301 1.08138 1.01779 1.21011 0.95998 1.05386 0.90638 1.24725 0.85536 1.06560 0.99093 1.86437 1.66953 1.35462 1.45925 0.93110 0.76468 0.86173 0.73658 0.91848 0.90224 0.92245 0.91005 0.92416 0.86991 0.91410 0.90651 0.94246 0.83226 0.74145 0.93993 0.86738 0.83703 0.88074 0.72429 0.75380 0.85363 0.90256 0.81872 0.84398 0.83806 0.88187 0.75635 1.22596 1.21216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 1.63 8.46 71.98 0.61 2.24 16 2 C -0.11 0.83 5.31 30.60 0.16 0.99 16 3 C -0.08 0.55 2.16 -10.79 -0.02 0.52 16 4 C -0.17 0.47 7.42 71.98 0.53 1.00 16 5 C 0.12 -0.23 2.30 44.24 0.10 -0.12 16 6 C 0.50 1.14 5.92 87.65 0.52 1.66 16 7 O -0.57 -7.40 15.07 -3.02 -0.05 -7.45 16 8 N -0.70 3.79 5.30 -440.03 -2.33 1.45 16 9 C 0.12 -0.39 4.21 45.52 0.19 -0.20 16 10 H 0.08 0.37 7.53 -2.39 -0.02 0.35 16 11 C -0.14 0.67 7.45 31.21 0.23 0.90 16 12 C -0.12 0.70 3.89 -10.18 -0.04 0.66 16 13 H 0.08 0.08 8.01 -2.39 -0.02 0.06 16 14 C 0.14 -1.27 6.39 86.38 0.55 -0.71 16 15 N -0.38 0.32 3.69 -352.06 -1.30 -0.98 16 16 C 0.26 -0.42 12.63 180.36 2.28 1.86 16 17 N -0.59 -3.48 11.19 -204.01 -2.28 -5.77 16 18 C 0.19 1.08 13.03 180.76 2.36 3.44 16 19 N -0.35 -2.28 12.46 -61.24 -0.76 -3.05 16 20 C -0.12 1.12 7.39 31.12 0.23 1.35 16 21 N -0.41 -1.33 1.77 -491.52 -0.87 -2.20 16 22 C 0.01 0.04 7.65 83.21 0.64 0.68 16 23 C -0.23 -1.67 10.86 22.14 0.24 -1.43 16 24 C -0.21 -1.15 9.38 22.14 0.21 -0.94 16 25 C -0.02 -0.06 6.28 41.08 0.26 0.19 16 26 C -0.05 0.06 2.66 71.23 0.19 0.25 16 27 O -0.54 3.01 8.36 -148.98 -1.25 1.77 16 28 Si 0.80 -1.73 30.60 68.60 2.10 0.36 16 29 H 0.06 -0.64 8.09 -2.39 -0.02 -0.66 16 30 H 0.08 -0.71 3.79 -2.39 -0.01 -0.72 16 31 H 0.06 -0.62 8.14 -2.39 -0.02 -0.64 16 32 H 0.07 -0.54 8.13 -2.39 -0.02 -0.55 16 33 H 0.06 -0.25 7.56 -2.39 -0.02 -0.26 16 34 H 0.11 -1.26 7.76 -2.39 -0.02 -1.28 16 35 H 0.07 -0.03 5.46 -2.38 -0.01 -0.04 16 36 H 0.07 -0.39 8.14 -2.39 -0.02 -0.41 16 37 H 0.04 0.06 6.43 -2.39 -0.02 0.05 16 38 H 0.15 -0.62 4.57 -2.39 -0.01 -0.64 16 39 H 0.42 -5.48 8.42 -92.71 -0.78 -6.26 16 40 H 0.04 0.09 8.14 -2.39 -0.02 0.07 16 41 H 0.11 -1.17 7.90 -2.39 -0.02 -1.19 16 42 H 0.15 -2.55 7.80 -2.39 -0.02 -2.57 16 43 H 0.10 -1.03 8.14 -2.38 -0.02 -1.05 16 44 H 0.26 -3.21 8.06 -2.91 -0.02 -3.24 16 45 H 0.23 0.09 8.06 -2.91 -0.02 0.06 16 46 H 0.13 -2.11 8.08 -2.39 -0.02 -2.13 16 47 H 0.08 -0.62 8.14 -2.39 -0.02 -0.64 16 48 H 0.16 1.00 5.40 -2.91 -0.02 0.99 16 49 H 0.14 0.77 8.06 -2.91 -0.02 0.74 16 50 H 0.14 0.45 6.30 -2.91 -0.02 0.44 16 51 H 0.10 0.09 7.96 -2.39 -0.02 0.07 16 52 H 0.39 -4.34 7.52 -74.06 -0.56 -4.90 16 53 H -0.30 -1.54 7.04 99.48 0.70 -0.84 16 54 H -0.28 -0.83 7.11 99.48 0.71 -0.12 16 Total: 0.00 -30.95 417.54 2.13 -28.82 By element: Atomic # 1 Polarization: -24.94 SS G_CDS: -0.37 Total: -25.30 kcal Atomic # 6 Polarization: 3.10 SS G_CDS: 9.23 Total: 12.34 kcal Atomic # 7 Polarization: -2.99 SS G_CDS: -7.55 Total: -10.54 kcal Atomic # 8 Polarization: -4.39 SS G_CDS: -1.29 Total: -5.68 kcal Atomic # 14 Polarization: -1.73 SS G_CDS: 2.10 Total: 0.36 kcal Total: -30.95 2.13 -28.82 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14644236_12360566.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.684 kcal (2) G-P(sol) polarization free energy of solvation -30.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 113.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -28.824 kcal (6) G-S(sol) free energy of system = (1) + (5) 115.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.68 seconds